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Improving interoperability between microbial information and sequence databases

Paolo Romano, Peter Dawyndt, Francesca Piersigilli, Jean Swings
2005 BMC Bioinformatics  
Biological resources are essential tools for biomedical research. Their availability is promoted through on-line catalogues. Common Access to Biological Resources and Information (CABRI) is a service for distribution of biological resources and related data collected by 28 European culture collections. Linking this information to bioinformatics databanks can make the collections' holdings more visible after a search in molecular biology databanks and vice-versa. Identification of links to
more » ... ce databases can be useful, but annotation and indexing problems, together with compilation errors, immediately arise. In this paper, we present our efforts for the identification of cross-references between CABRI catalogues and the EMBL Data Library and related results. Results: An SRS site with both EMBL and CABRI catalogues has been set up. Ad-hoc changes in indexing scripts allowed to achieve homogeneous index keys and SRS link features have been used to identify links between databases. After manual checking and comparison with an alternative procedure, about 67,500 valid cross-references were identified, added to the EMBL Data Library and are now distributed with it. HTML links can be established from EMBL to CABRI network service. Procedures can be executed whenever needed. Conclusion: Links between EMBL and CABRI catalogues constitute an improved access to microorganisms of certified quality and can produce positive effects on biomedical research. Further links between CABRI catalogues and other bioinformatics databases can now easily be defined by using these cross-references. Linking genetic information onto natural resources information may stand model for the integration of other databases containing empirical data on these materials.
doi:10.1186/1471-2105-6-s4-s23 pmid:16351750 pmcid:PMC1866384 fatcat:dovfpewrqfhv3nhbkbtlntg6va

Early predictors of perinatal brain damage: the role of neurobiomarkers

Iliana Bersani, Francesca Pluchinotta, Andrea Dotta, Immacolata Savarese, Francesca Campi, Cinzia Auriti, Natalia Chuklantseva, Fiammetta Piersigilli, Francesca Gazzolo, Alessandro Varrica, Angela Satriano, Diego Gazzolo
2019 Clinical Chemistry and Laboratory Medicine  
Andrea Dotta, Savarese Immacolata, Cinzia Auriti, Natalia Chukhlantseva, Fiammetta Piersigilli, Francesca Gazzolo, contributed to data report analysis.  ...  Pluchinotta Francesca contributed to conceptualization, writingreview and editing.  ... 
doi:10.1515/cclm-2019-0725 pmid:31851609 fatcat:yjws3hpur5bbng5e6chr7chjm4

Heart rate variability as possible marker of brain damage in neonates with hypoxic ischemic encephalopathy: a systematic review

Iliana Bersani, Fiammetta Piersigilli, Diego Gazzolo, Francesca Campi, Immacolata Savarese, Andrea Dotta, Pietro Paolo Tamborrino, Cinzia Auriti, Corrado Di Mambro
2020 European Journal of Pediatrics  
Fiammetta Piersigilli contributed to the conceptualization, systematic review, investigation, supervision, writing-first draft, review, and editing.  ...  Francesca Campi contributed to the conceptualization, investigation, writing-review and editing. Andrea Dotta contributed to the conceptualization, investigation, writing-review and editing.  ... 
doi:10.1007/s00431-020-03882-3 pmid:33245400 fatcat:7s4tw6xmcfaulcwsyjdiwck4i4

Frontmatter

2020 Clinical Chemistry and Laboratory Medicine  
Pluchinotta, Andrea Dotta, Immacolata Savarese, Francesca Campi, Cinzia Auriti, Natalia Chuklantseva, Fiammetta Piersigilli, Francesca Gazzolo, Alessandro Varrica, Angela Satriano and Diego Gazzolo  ...  immunoassays using the CALIPER cohort of healthy children and adolescents 635 Online Only Content https://www.degruyter.com/view/j/cclm.2020.58. issue-4/issue-files/cclm.2020.58.issue-4.xml Iliana Bersani, Francesca  ... 
doi:10.1515/cclm-2020-frontmatter4 fatcat:mvrntuprajegfastrojfngr4ry

Lettere a Oreste Macrí. Schedatura e regesto di un fondo con un'appendice di testi epistolari inediti, a cura di Dario Collini, Firenze, FUP, 2018

Alberto Baldi
2018
Vieusseux», a cura di Ilaria Eleodori, Helenia Piersigilli, Francesca Polidori, Cristina Provvedi, sotto la direzione di Anna Dolfi e Caterina Del Vivo) allegato a Macrí 2003.  ...  Vieusseux», a cura di Helenia Piersigilli e del «GRBM» sotto la direzione di Anna Dolfi e Laura Desideri) allegato a Dolfi 2007.  ... 
doi:10.13128/lea-1824-484x-24431 fatcat:waitqeu6qfbkdh544k22a43ixm

Bone marrow stromal cells from β-thalassemia patients have impaired hematopoietic supportive capacity

Stefania Crippa, Valeria Rossella, Annamaria Aprile, Laura Silvestri, Silvia Rivis, Samantha Scaramuzza, Stefania Pirroni, Maria Antonietta Avanzini, Luca Basso-Ricci, Raisa Jofra Hernandez, Marco Zecca, Sarah Marktel (+4 others)
2019 Journal of Clinical Investigation  
Acknowledgments We thank Maurilio Ponzoni and Francesca Sanvito for performing histological analysis, immunohistochemistry and semiquantitative analysis of the results, and for interpreting the data.  ...  We thank Serena Scala (SR-TIGET, IRCCS San Raffaele Scientific Institute), Mara Riminucci and Alessandro Corsi (University La Sapienza) and Alessandra Piersigilli (Memorial Sloan Kettering Cancer Center  ... 
doi:10.1172/jci123191 pmid:30830876 pmcid:PMC6436882 fatcat:5zazjhhqvvf4pcizl7nrg6763q

Abdominal Teratoma in a Domestic Duck (Anas platyrhynchos domesticus)

C. Palmieri, M. Romanucci, P. Loi, L. Della Salda
2012 Journal of Comparative Pathology  
SURVIVIN EXPRESSION IN CANINE HAIR FOLLICLE TUMOURS Bongiovanni Laura, Di Diodoro Francesca, Brachelente Chiara 1 , Malatesta Daniela, Romanucci Mariarita, Mechelli Luca 1 , Della Salda Leonardo University  ...  IMAGE-ANALYSIS FOR QUANTIFICATION OF KI67, TBR2 AND DOUBLECORTIN IMMUNOSTAINING AS TISSUE-BASED BIOMARKERS OF NEUROGENESIS IN A "RUNNING WHEEL" MOUSE MODEL Annika Herrmann 1 , Thomas Kremer 1 , Alessandra Piersigilli  ... 
doi:10.1016/j.jcpa.2011.11.160 fatcat:g26hqjmprjhrtcwe6oaxav6sem

"REALTÀ VIRTUALE quale metodo per la conservazione e lo studio dei Beni Architettonici e Monumentali. Proposta per un Museo Virtuale sugli Scavi di Pompei. Ricostruzione nella REG. VI di edifici in Realtà Virtuale interattiva"

Maria Rosaria Verdino
2011
A cura di: Antonella Guidazzoli, Francesca Delli Ponti, Tiziano Diamanti, Patrizia Coluccia.  ...  Pag. 53. 76 ENZO PIERSIGILLI: "Realtà Virtuale". 2006. sensazioni tali da poter interpretare una materialità diversa da quella trasmessa da un qualsiasi supporto grafico: la CVR diventa uno strumento percettivo  ... 
doi:10.6092/unina/fedoa/8749 fatcat:oexo37e7w5dhhbbkpxuuuavvl4