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Fostering accessible online education using Galaxy as an e-learning platform

Beatriz Serrano-Solano, Melanie C. Föll, Cristóbal Gallardo-Alba, Anika Erxleben, Helena Rasche, Saskia Hiltemann, Matthias Fahrner, Mark J. Dunning, Marcel H. Schulz, Beáta Scholtz, Dave Clements, Anton Nekrutenko (+3 others)
2021 PLoS Computational Biology  
The Galaxy framework facilitates the online learning process and makes it accessible by providing a library of high-quality community-curated training materials, enabling easy access to data and tools,  ...  The COVID-19 pandemic is shifting teaching to an online setting all over the world.  ...  Acknowledgments We would like to thank the Galaxy community for their constant work and support.  ... 
doi:10.1371/journal.pcbi.1008923 pmid:33983944 fatcat:xe5lwcf66fbpbpqixfs5ok7a6e

A constructivist-based proposal for bioinformatics teaching practices during lockdown

Cristóbal Gallardo-Alba, Björn Grüning, Beatriz Serrano-Solano, Francis Ouellette
2021 PLoS Computational Biology  
This article reviews the pedagogical foundations for developing effective distance education practices, starting from the assumption that promoting autonomous thinking is an essential element to guarantee  ...  The Coronavirus Disease 2019 (COVID-19) outbreaks have caused universities all across the globe to close their campuses and forced them to initiate online teaching.  ...  Acknowledgments We would like to thank the Galaxy community, Dr. Nicole Woehrle and Dr. Jean-Karim Hériché, for their valuable comments and improvements on this manuscript.  ... 
doi:10.1371/journal.pcbi.1008922 pmid:33983931 fatcat:hne37675ijfhldunxg5pmf775q

The INOS Learning Design Framework: Fostering the Educational Value of Open Science, Citizen Science and Open Innovation Activities

Elisha Anne Teo
2020 Zenodo  
The INOS Learning Design Framework: Fostering the Educational Value of Open Science, Citizen Science and Open Innovation Activities www.inos-project.eu  ...  OS/CS/OI Learning Activities often take advantage of online resources that are openly accessible, which can be used as at-home learning tools and resources ( About OS/CS/OI Learning Activities This  ...  online data portal) • The activity's availability as an open educational resource (e.g. license-free lesson plans, tools and resources).  ... 
doi:10.5281/zenodo.3932148 fatcat:c7h5kpkkvrf2jcgzmzqq4b4vuy

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko
2020 Nucleic Acids Research  
Since 2005, the Galaxy project has fostered a global community focused on achieving accessible, reproducible, and collaborative research.  ...  and publishes analyses using Galaxy, leads bioinformatics workshops that introduce and use Galaxy, and develops interactive training materials for Galaxy.  ...  ACKNOWLEDGEMENTS The growth of the Galaxy project is made possible by a growing community of users, developers, system administrators and educators.  ... 
doi:10.1093/nar/gkaa434 pmid:32479607 pmcid:PMC7319590 fatcat:ykgnlubu7jhwlapfinzuxczkxq

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan (+4 others)
2019 F1000Research  
In addition to face-to-face training courses, online training was introduced on the de.NBI website in 2016 and guidelines for the preparation of e-learning material were established in 2018.  ...  The de.NBI / ELIXIR-DE training platform, also known as special interest group 3 (SIG 3) 'Training & Education', coordinates the bioinformatics training of de.NBI and the German ELIXIR node.  ...  Narrative could be used to describe key features of the platform (as listed above) and of courses. e-learning model(s) also could be better described (synchronous?asynchronous? Blended? etc).  ... 
doi:10.12688/f1000research.20244.1 pmid:33163154 pmcid:PMC7607484 fatcat:g4gztfjahrbkdepxw6rgkjfhjy

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan (+4 others)
2020 F1000Research  
In addition to face-to-face training courses, online training was introduced on the de.NBI website in 2016 and guidelines for the preparation of e-learning material were established in 2018.  ...  The de.NBI / ELIXIR-DE training platform, also known as special interest group 3 (SIG 3) 'Training & Education', coordinates the bioinformatics training of de.NBI and the German ELIXIR node.  ...  Narrative could be used to describe key features of the platform (as listed above) and of courses. e-learning model(s) also could be better described (synchronous?asynchronous? Blended? etc).  ... 
doi:10.12688/f1000research.20244.2 fatcat:io4rgsengvddhlhwjgpqv5livu

Using Mobile Technology in Language Learning: Merits and Demerits

2019 Journal of Education and Practice  
Teachers and students have always been interested in finding new paths that may lead to enjoyable language learning (e.g., using various online/offline resources and educational mobile apps).  ...  However, as it will be discussed in detail, a number of issues exist regarding the demerits of MALL such as technical problems, distractions and so forth.  ...  What this means is that linguistically challenging encounters that could not be predicted can change to an informal learning context via online resources and apps accessed through mobile technology. •  ... 
doi:10.7176/jep/10-1-01 fatcat:7sp6keurqbay3iogpe73jblkmi

KaruBioNet: a network and discussion group for a better collaboration and structuring of bioinformatics in Guadeloupe (French West Indies)

David Couvin, Alexis Dereeper, Damien F Meyer, Christophe Noroy, Stanie Gaete, Bernard Bhakkan, Nausicaa Poullet, Sarra Gaspard, Etienne Bezault, Isabel Marcelino, Ludovic Pruneau, Wilfried Segretier (+12 others)
2022 Bioinformatics Advances  
Furthermore, a dedicated "Galaxy KaruBioNet" platform is available at: http://calamar.univ-ag.fr/c3i/galaxy_karubionet.html.  ...  The purpose of this group is to foster collaboration and mutual aid among people from different disciplines using a 'one health' approach, for a better comprehension and surveillance of humans, plants,  ...  Several computational tests have been performed using Wahoo and Exocet, the clusters of the Centre Commun de Calcul Intensif (C3I) of the Universit e des Antilles.  ... 
doi:10.1093/bioadv/vbac010 fatcat:dyjvs4r4qnek7jfmjlkq5s6pe4

Proceedings for the 3rd Shaw-IAU Workshop on Astronomy for Education: What Everybody Should Know about Astronomy Education [article]

Asmita Bhandare, Giuliana Giobbi, Colm Larkin, Rebecca Sanderson, Eduardo Penteado, Niall Deacon, Gwen Sanderson, Anna Sippel
2021 Zenodo  
This is a summary of the 3rd Shaw-IAU workshop on Astronomy for Education held 12 – 15 October, 2021 as a virtual event. The workshop was organised by the IAU Office of Astronomy for Education.  ...  We invite you to join us in reflection and action to engage with communities that have been harmed or marginalized by some of the dominant practices of science.  ...  We would be only teaching components of a scientific paradigm; we would not be educating through Astronomy.  ... 
doi:10.5281/zenodo.5768700 fatcat:m7ltmzzmjbcr3inrdnweemstly

Developing New Educational Frontiers through Breakthroughs in Cognitive Computation and New Dimensions in Pedagogical Technology

J. C. Olabe
2016 International Journal of Social Science and Humanity  
This article reviews: some of the major changes is online access to higher education around the world; the fundamental ideas that cognitive sciences and computation are advancing for a new educational  ...  its capabilities and limitations are; and the use of technology for the implementation of pedagogical strategies that will lead to optimal learning experiences.  ...  These areas include: online access to quality education; knowledge of how the mind works; and the use of technology to support mastery learning.  ... 
doi:10.18178/ijssh.2016.v6.755 fatcat:57m3bydcjfbltotgfe2emhuzge

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

Ulysse Rubens, Romain Mormont, Lassi Paavolainen, Volker Bäcker, Benjamin Pavie, Leandro A. Scholz, Gino Michiels, Martin Maška, Devrim Ünay, Graeme Ball, Renaud Hoyoux, Rémy Vandaele (+6 others)
2020 Patterns  
We illustrated these features by comparing seven nuclei segmentation workflows, including deep-learning methods.  ...  The platform is thoroughly documented and ready to gather annotated microscopy datasets and workflows contributed by the bioimaging community.  ...  BIAFLOWS is a web platform addressing these needs. It can be used as a local solution or through an immediately accessible and curated online instance.  ... 
doi:10.1016/j.patter.2020.100040 pmid:33205108 pmcid:PMC7660398 fatcat:wzd64p2nsfbenbzyzcwv6jl5li

Systematizing benefits of open science practices

Valeria Arza, Mariano Fressoli, Leslie Chan, Fernando Loizides
2018 Information Services and Use  
The first dimension accounts for the characteristics of the collaboration, while the second for aspects of access to shared outputs.  ...  In the conclusion, we briefly illustrate our framework using evidence from four Argentinean open science initiatives.  ...  In addition we would like to thank all our interviewees for their time and ideas shared with us in several opportunities and Sol Sebastian for her excellent research assistance.  ... 
doi:10.3233/isu-170861 fatcat:cmuruqxp4nfqxnyt5jtxlpdwfi

Smart Learning Improves Student Participation

Lee Bih Ni, Wan Luen Chai, Sopiah Abdullah
2021 Malaysian Journal of Social Sciences and Humanities  
These are students who strive to learn remotely online and use electronic equipment (e-learning). The reality is, the e-learning situation is very different from the daily school routine.  ...  The Ministry of Education (MOE) learning activities are still running as usual with teachers advised to find the best method.  ...  In addition to the official e-learning portals developed by some universities, lecturers can use portals on existing platforms or websites such as Zoom, Google Suite and Google Classroom.  ... 
doi:10.47405/mjssh.v6i4.738 fatcat:7txcyumfvnahvl4hv4na5upslm

M-learning Devices and their Impact on Postgraduate Researchers Scope for Improved Integration in the Research Community

Emerson Abraham Jackson
2015 International Journal of Advanced Corporate Learning  
The distributed structured questionnaire helped immensely in enabling researchers to express their opinions both on the impacts of M-Learning devices on their ability to access resources and the diverse  ...  was also explored, and with particular reference to virtual research medium in facilitating continuous support to postgraduate researchers seeking knowledge to engage themselves actively in research using  ...  Higher education throughout the developed nations, particularly in the US and UK are now encouraged to use electronic means of learning [Kissinger, 2013] , particularly with the use of e-book as a cost-saving  ... 
doi:10.3991/ijac.v8i4.5024 fatcat:dylq6focwzhlben73igjxed3qq

The Digital Scholar Revisited

M. Weller
2018 The Digital Scholar Philosopher s Lab  
Ключевые слова: цифровые практики в науке и образовании, e-learning, высшее образование, открытое образование, социальные медиа.  ...  At the time of writing in 2010-11 although e-learning had entered the mainstream with widespread adoption of Learning Management Systems, [Medved, 2015] much of the focus was on the potential of digital  ... 
doi:10.5840/dspl20181218 fatcat:7rm6dw25zvba5ipjpoy6qyhkia
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