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String Matching with Variable Length Gaps
[chapter]
2010
Lecture Notes in Computer Science
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We consider string matching with variable length gaps. ...
Given a string T and a pattern P consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending positions of substrings in ...
Hence, a variable length gap g{a, b}, represented by a constant length expression in P , is translated into a regular expression of length Ω(σb). ...
doi:10.1007/978-3-642-16321-0_40
fatcat:kdas2lruazgdzbru2cnlue7qoy
String matching with variable length gaps
2012
Theoretical Computer Science
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We consider string matching with variable length gaps. ...
Given a string T and a pattern P consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending positions of substrings in ...
Hence, a variable length gap g{a, b}, represented by a constant length expression in P, is translated into a regular expression of length Ω(σ b). ...
doi:10.1016/j.tcs.2012.03.029
fatcat:v77gdbj225ggfbiogabqlxvyma
String Matching with Variable Length Gaps
[article]
2011
arXiv
pre-print
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We consider string matching with variable length gaps. ...
Given a string T and a pattern P consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending positions of substrings in ...
Hence, a variable length gap g{a, b}, represented by a constant length expression in P , is translated into a regular expression of length Ω(σb). ...
arXiv:1110.2893v1
fatcat:zofasbe2mjfunakohsyn3dr3va
On the limited role of target onset in the gap task: Support for the motor-preparation hypothesis
2007
Journal of Vision
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Analyses of anticipations and regular-latency errors corroborated this view. ...
In Experiment 3, we manipulated target onset and target uncertainty (two, four, or eight potential target locations) in gap and overlap tasks. ...
Fixation offset (gap vs. overlap) and target onset (yes vs. no) were orthogonally manipulated as independent variables within each block of trials, resulting in four conditions (gap target onset, gap no ...
doi:10.1167/7.10.7
pmid:17997676
fatcat:bexv6fyn7zhczlpfndaedmwdpa
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
2006
BMC Bioinformatics
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The n-of-m pattern type offers an improved accuracy for pattern matching in combination with the ability to find all solutions, without compromising the user friendliness of regular expression terms. ...
The n-of-m pattern type can be combined with common regular expression terms and thus also allows for a comprehensive description of complex patterns. 3of5 increases the fidelity of pattern matching and ...
This work was supported by the German Federal Ministry of Education and Research (BMBF) as project within the National Genome Research Network (NGFN) with grant 01GR0420. ...
doi:10.1186/1471-2105-7-144
pmid:16542452
pmcid:PMC1523217
fatcat:kmteezpxqbg5tibehifuxzcslq
An Efficient Optimization Algorithm for Structured Sparse CCA, with Applications to eQTL Mapping
2011
Statistics in Biosciences
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Our optimization algorithm is based on a general excessive gap optimization framework and can scale up to millions of variables. ...
In this paper we develop an efficient optimization algorithm for solving canonical correlation analysis (CCA) with complex structured-sparsity-inducing penalties, including overlapping-group-lasso penalty ...
Carbonell for the helpful discussion on the excessive gap methods and related first-order methods. ...
doi:10.1007/s12561-011-9048-z
fatcat:sgqqjkdanbglbexchkpgnwwdne
Exploring medical expressions used by consumers and the media: an emerging view of consumer health vocabularies
2003
AMIA Annual Symposium Proceedings
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Healthcare consumers often have difficulty expressing and understanding medical concepts. ...
While 80% conceptual overlap was found between closely mapped lay (consumer and mediator) and technical (professional) medical terms, about half of these overlapping concepts contained lay forms different ...
The frequency distribution of expressive variability within each vocabulary follows a Zipf-type curve, with the majority of concepts represented by a single form. ...
pmid:14728258
pmcid:PMC1479921
fatcat:oo3vrtkxefgp5hkgq5snjdkasy
Timing during transitions in Bengalese finch song: implications for motor sequencing
2017
Journal of Neurophysiology
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In agreement with previous studies, we found that more probable transitions at divergence points occur with shorter intersyllable gaps. ...
Together, our data suggest that syllable selection happens early during the gap, with gap timing determined chiefly by the latency to syllable initiation. ...
This means that the gap length distributions for high-and low-probability transitions have very little overlap. ...
doi:10.1152/jn.00296.2017
pmid:28637816
fatcat:75t47bnfcncwha4ckwn32dwtmq
Shrinking of a condensed fermionic cloud in a trap approaching the Bose-Einstein condensation limit
2003
Physical Review A. Atomic, Molecular, and Optical Physics
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We find a significant decrease of the size of the atomic cloud as it evolves from the weak-coupling (BCS) regime of overlapping Cooper pairs to the strong-coupling (Bose-Einstein) regime of non-overlapping ...
Most significantly, we find a pronounced increase of the value of the density at the center of the trap (even by an order of magnitude) when evolving between the two regimes. ...
states, and then regularizing the ensuing ultraviolet divergence of the gap equation in terms of the scattering length a F of the associated fermionic twobody problem ͓10,11͔. ...
doi:10.1103/physreva.68.031601
fatcat:jlfcyi5p3bfehphaf4xsklcbl4
Bayesian Classifier for Anchored Protein Sorting Discovery
2009
2009 IEEE International Conference on Bioinformatics and Biomedicine
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in which a highly conserved anchor is present along with a less conserved motif regions. ...
Transportation of these proteins from their synthesis sites to their target locations within or outside of the cell is precisely controlled by protein sorting signals. ...
We appreciate the discussion with other members of the Machine Learning and Evolutionary Laboratory at USC. The web server for this program will be made available at http://mleg.cse.sc.edu/sortmotif. ...
doi:10.1109/bibm.2009.43
dblp:conf/bibm/ZhangH09
fatcat:ebijbygsybfchmt2ywnmrdq37a
Defect layer method to capture effect of gaps and overlaps in variable stiffness laminates made by Automated Fiber Placement
2013
Composite structures
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Laminates with variable stiffness design can be manufactured with Automated Fiber Placement (AFP) technology. ...
Then, a methodology is developed to locate gaps and overlaps and calculate their area percentages. ...
We introduce here a defect layer, which can be a regular composite material with an embedded defect (gap or overlap). ...
doi:10.1016/j.compstruct.2012.10.031
fatcat:6zsthldz7zfbrgf2u4hkypyisy
SMOTIF: efficient structured pattern and profile motif search
2006
Algorithms for Molecular Biology
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A structured motif allows variable length gaps between several components, where each component is a simple motif, which allows either no gaps or only fixed length gaps. ...
It can effectively search for LTR retrotransposons and is well suited to searching for motifs with long range gaps. ...
Anrep [3, 4] provides a unified biosequence pattern representation by using network expressions with spacers, where a network expression is a regular expression without Kleene closure. ...
doi:10.1186/1748-7188-1-22
pmid:17118189
pmcid:PMC1679804
fatcat:npasf5kn55el7fnjoniuxlbuda
What neural pathways mediate express saccades?
1993
Behavioral and Brain Sciences
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This target article puts together pieces of experimental evidence in oculomotor and related research -with special emphasis on the express saccade -to enhance our present understanding of the coordination ...
interactive "skywriting" discussion with the world psychological community. ...
The proposed distribution of saccade latencies into regular (R), fast regular (FR), and express (E) populations, depending on overlap or gap length.
Figure 2 ( 2 Wenban-Smith). ...
doi:10.1017/s0140525x00031824
fatcat:kjfqazq4zjhqrk7krgxb4xyl7i
Express saccades and visual attention
1993
Behavioral and Brain Sciences
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This target article puts together pieces of experimental evidence in oculomotor and related research -with special emphasis on the express saccade -to enhance our present understanding of the coordination ...
interactive "skywriting" discussion with the world psychological community. ...
The proposed distribution of saccade latencies into regular (R), fast regular (FR), and express (E) populations, depending on overlap or gap length.
Figure 2 ( 2 Wenban-Smith). ...
doi:10.1017/s0140525x00031575
fatcat:z6co6bds6fgvppgxpk7jz2vbku
Partial Enumeration and Curvature Regularization
2013
2013 IEEE International Conference on Computer Vision
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Our main application of interest is curvature regularization. ...
Energies with high-order non-submodular interactions have been shown to be very useful in vision due to their high modeling power. Optimization of such energies, however, is generally NP-hard. ...
Unlike length or squared curvature regularization, this term does not add shrinking or ballooning bias. ...
doi:10.1109/iccv.2013.365
dblp:conf/iccv/OlssonUBK13
fatcat:iyrvh6cecfg7fdv5tnu6vnck2u
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