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Figure mining for biomedical research

R. Rodriguez-Esteban, I. Iossifov
<span title="2009-05-13">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
A search engine was developed to retrieve tables and figure types to aid computational and experimental research.  ...  Motivation: Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types.  ...  Figure mining Figure mining for biomedical research Table 1 . 1 Figure type frequency within the annotated samples The number of samples annotated was different for each type.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btp318">doi:10.1093/bioinformatics/btp318</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19439564">pmid:19439564</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ioeywxcx75cefpbgbue7uatbja">fatcat:ioeywxcx75cefpbgbue7uatbja</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922001002/http://repository.cshl.edu/27377/1/Iossifov%20Bioinformatics%202009.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f3/ad/f3adade6e6e5b0f1474fbd0e9b23278543945051.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btp318"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Application of Biomedical Text Mining [chapter]

Lejun Gong
<span title="2018-06-27">2018</span> <i title="InTech"> Artificial Intelligence - Emerging Trends and Applications </i> &nbsp;
The aim is to provide a way to quickly understand biomedical text mining for some researchers.  ...  Aiming at this massive literature to process, it could extract more biological information for mining biomedical knowledge.  ...  Figure 7 . 7 Relationship visualization between genes. Application of Biomedical Text Mining http://dx.doi.org/10.5772/intechopen.75924 biomedical text mining.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5772/intechopen.75924">doi:10.5772/intechopen.75924</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5o27ptssi5fwzbelnpktkwplby">fatcat:5o27ptssi5fwzbelnpktkwplby</a> </span>
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Adaptation of MelanomaMine and LiMTox to the analysis of paediatric cancers and application to biomedical publications on paediatric cancers

Davide Cirillo, Matteo Manica, Salvador Capella-Gutierrez, Alfonso Valencia, Martin Krallinger, Javier Omar Corvi, José María Fernández, Alejandro Canosa, Elena De La Calle, Joao Pita Costa, Jolanda Modic
<span title="2021-05-31">2021</span> <i title="Zenodo"> Zenodo </i> &nbsp;
The deliverable reports on the implementation of the iPC text mining workflow and three use cases for extracting biomedical information from large volumes.  ...  These tools will be used in the framework of the iPC project but also beyond, having a clear impact in the research community.  ...  biomedical research in skin malignancies.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5281/zenodo.6546342">doi:10.5281/zenodo.6546342</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ro3eopiyqbebrpfuk6cxuzujdq">fatcat:ro3eopiyqbebrpfuk6cxuzujdq</a> </span>
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Efficient Retrieval of Text for Biomedical Domain using Data Mining Algorithm

Sumit Vashishta, Dr. Yogendra
<span title="">2011</span> <i title="The Science and Information Organization"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2yzw5hsmlfa6bkafwsibbudu64" style="color: black;">International Journal of Advanced Computer Science and Applications</a> </i> &nbsp;
This paper presents a technique for using soft clustering data mining algorithm to increase the accuracy of biomedical text extraction.  ...  Biomedical text retrieval is a way to aid researchers in coping with information overload.  ...  ACKNOWLEDGMENT This research is supported by the Computer Science and Engineering department, SATI, Vidhisha.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14569/ijacsa.2011.020412">doi:10.14569/ijacsa.2011.020412</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cot7somuffdnbikefppbi2aisq">fatcat:cot7somuffdnbikefppbi2aisq</a> </span>
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Mining biomedical images towards valuable information retrieval in biomedical and life sciences

Zeeshan Ahmed, Saman Zeeshan, Thomas Dandekar
<span title="">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
In this review, we summarize technologies related to data mining of figures.  ...  Biomedical images are helpful sources for the scientists and practitioners in drawing significant hypotheses, exemplifying approaches and describing experimental results in published biomedical literature  ...  We would like to thank all supporting institutes during this research, especially to the University of Wuerzburg Germany and the Jackson Laboratory for Genomic Medicine USA.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw118">doi:10.1093/database/baw118</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27538578">pmid:27538578</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4990152/">pmcid:PMC4990152</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dlyhrh5nxjhutlvvw2qkgx3wei">fatcat:dlyhrh5nxjhutlvvw2qkgx3wei</a> </span>
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Overview of the Ninth Annual Meeting of the BioLINK SIG at ISMB: Linking Literature, Information and Knowledge for Biology [chapter]

Christian Blaschke, Lynette Hirschman, Hagit Shatkay, Alfonso Valencia
<span title="">2010</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
In the biomedical domain, research has focused on several complex text-based applications, including the identification of relevant literature (information retrieval) for specific information needs, the  ...  from biomedical text.  ...  It uses a combination of text-mining and image processing to extract information from figures in the biomedical literature.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-13131-8_1">doi:10.1007/978-3-642-13131-8_1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/42nm5vxcdnafjkogcz4wcoasoa">fatcat:42nm5vxcdnafjkogcz4wcoasoa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809125002/https://www.eecis.udel.edu/~shatkay/papers/BioLINK2010P1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f1/e1/f1e117217f602c7e34c11909a4859196079f4ab2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-13131-8_1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Text mining biomedical literature for constructing gene regulatory networks

Yong-Ling Song, Su-Shing Chen
<span title="2009-08-07">2009</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4hvgoskn3rg55ig3fscmzdfpjm" style="color: black;">Interdisciplinary Sciences Computational Life Sciences</a> </i> &nbsp;
Evaluation result for text mining biomedical literature subsystem.  ...  Then, we supply the evaluation results of the Text Mining Biomedical Literature Subsystem. In the end, we explain the research contribution of the Text Mining Biomedical Literature Subsystem.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12539-009-0028-7">doi:10.1007/s12539-009-0028-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20640836">pmid:20640836</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5bnptxze4vfk3gck2wywg4zeum">fatcat:5bnptxze4vfk3gck2wywg4zeum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170705104554/http://ufdcimages.uflib.ufl.edu/UF/E0/02/12/03/00001/song_y.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/22/d9/22d96c08a03d6e0673a6d56e857dc7fbecd24191.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12539-009-0028-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

An Improved Mining of Biomedical Data from Web Documents Using Clustering

<span title="2016-02-05">2016</span> <i title="International Journal of Science and Research"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/odv46yibm5gf7evzoopmrrqr3q" style="color: black;">International Journal of Science and Research (IJSR)</a> </i> &nbsp;
The goal of this is to apply text mining techniques to retrieve useful biomedical web documents.  ...  Mainly users go for the various search engines to search any information.  ...  Text mining has been one of the fastest growing research fields for the past few decades.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21275/v5i2.nov161318">doi:10.21275/v5i2.nov161318</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fx27fmpikzbt3bgunwrprevjna">fatcat:fx27fmpikzbt3bgunwrprevjna</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220226204313/https://www.ijsr.net/archive/v5i2/NOV161318.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f6/7b/f67bf9556286f90c76b7c8343b0afbba9dad116f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21275/v5i2.nov161318"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Frontiers of biomedical text mining: current progress

P. Zweigenbaum, D. Demner-Fushman, H. Yu, K. B. Cohen
<span title="2007-06-20">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/op7ztx4fhvairowgqifu7dnvsi" style="color: black;">Briefings in Bioinformatics</a> </i> &nbsp;
However, a number of problems at the frontiers of biomedical text mining continue to present interesting challenges and opportunities for great improvements and interesting research.  ...  In this article we review the current state of the art in biomedical text mining or 'BioNLP' in general, focusing primarily on papers published within the past year.  ...  KBC was supported by NIH grants 'Construction of a Full Text Corpus for Biomedical Text Mining' (#1G08LM009639-01) and 'Technology Development for a Molecular Biology Knowledge-base' (#5R01 LM008111-03  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbm045">doi:10.1093/bib/bbm045</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17977867">pmid:17977867</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2516302/">pmcid:PMC2516302</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4nfbokb7lfdjbnkijw2v6754qy">fatcat:4nfbokb7lfdjbnkijw2v6754qy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20120123134026/https://pantherfile.uwm.edu/hongyu/www/files/articles/briefings.bioinformatics.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/66/f866e0591f0d017ca902597ef9eaac64122607a5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bib/bbm045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516302" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis

Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai, Wen-Lian Hsu
<span title="">2008</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vhz67i7ervharbc3bpo2kido2q" style="color: black;">2008 IEEE International Conference on Sensor Networks, Ubiquitous, and Trustworthy Computing (sutc 2008)</a> </i> &nbsp;
In recent years, a range of text-mining applications have been developed to improve access to knowledge for biologists and database curators.  ...  This paper surveys text-mining works published from 2006 to 2008, with the emphasis on named entity recognition, biological relation extraction and currently available online biological text mining services  ...  However, biomedical text mining is an extremely active research area, and the outlook for continued progress is positive. Figure 1 . 1 The features of the BWS search interface.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/sutc.2008.86">doi:10.1109/sutc.2008.86</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/sutc/DaiHLCTH08.html">dblp:conf/sutc/DaiHLCTH08</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rro4q63izfesvo7q3mfzhxelwu">fatcat:rro4q63izfesvo7q3mfzhxelwu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810031822/http://www.iis.sinica.edu.tw/papers/hsu/6296-F.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ee/f5/eef586056abfaf119180315f69b5ba8e8901b841.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/sutc.2008.86"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

Ayush Singhal, Robert Leaman, Natalie Catlett, Thomas Lemberger, Johanna McEntyre, Shawn Polson, Ioannis Xenarios, Cecilia Arighi, Zhiyong Lu
<span title="">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ejkvir3kzbdojf5kygupkidsca" style="color: black;">Database: The Journal of Biological Databases and Curation</a> </i> &nbsp;
In this article, we argue that text-mining technologies have become essential tools in real-world biomedical research.  ...  Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.  ...  In addition, today's curated databases are critical in biomedical research by being a firsthand tool for researchers to investigate their hypothesis or research results (3) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw161">doi:10.1093/database/baw161</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28025348">pmid:28025348</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5199160/">pmcid:PMC5199160</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q22gw7owfjejznsrom3c4xnlem">fatcat:q22gw7owfjejznsrom3c4xnlem</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200505024203/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5199160&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6b/e4/6be42ba71451d5a0d8af0819bed36c0b16994c75.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/database/baw161"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5199160" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A Novel Framework for Biomedical Text Mining

Janyl Jumadinova, Oliver Bonham-Carter, Hanzhong Zheng, Michael Camara, Dejie Shi
<span title="">2020</span> <i title="Computers, Materials and Continua (Tech Science Press)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/772lr7vicjhstonzbkdbscoodu" style="color: black;">Journal on Big Data</a> </i> &nbsp;
Text mining has emerged as an effective method of handling and extracting useful information from the exponentially growing biomedical literature and biomedical databases.  ...  We developed a novel biomedical text mining model implemented by a multi-agent system and distributed computing mechanism.  ...  The increasing complexity and quantity of biomedical information during the recent years have triggered a need for text mining tools in biomedical research.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.32604/jbd.2020.010090">doi:10.32604/jbd.2020.010090</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mobdvmwqyfhf5cx2fbi5zezclu">fatcat:mobdvmwqyfhf5cx2fbi5zezclu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220223054712/https://www.techscience.com/uploads/attached/file/20201224/20201224081310_87692.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/da/da/dada37bddbb0cd07572141daceb6de250f5747dc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.32604/jbd.2020.010090"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Strengthening collaborative data analysis and decision making in web communities

Nikos Karacapilidis, Spyros Christodoulou, Manolis Tzagarakis, Georgia Tsiliki, Costas Pappis
<span title="">2014</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s4hirppq3jalbopssw22crbwwa" style="color: black;">Proceedings of the 23rd International Conference on World Wide Web - WWW &#39;14 Companion</a> </i> &nbsp;
The functionalities of the proposed platform are described through a real-world case from a biomedical research community.  ...  Researchers need to collaborate and make decisions by meaningfully assembling, mining and analyzing available large-scale volumes of complex multi-faceted data residing in different sources.  ...  common in the biomedical research domain.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2567948.2578845">doi:10.1145/2567948.2578845</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/www/KaracapilidisCTTP14.html">dblp:conf/www/KaracapilidisCTTP14</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2can7yckqzafdkypc3fzlaygxq">fatcat:2can7yckqzafdkypc3fzlaygxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829125316/http://www.mech.upatras.gr/~nikos/papers/www14-p1005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7a/f0/7af0a2ecd1a35b038cbcc8617ba3c0a706f50f01.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2567948.2578845"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Coronavirus Knowledge Graph: A Case Study [article]

Chongyan Chen, Islam Akef Ebeid, Yi Bu, Ying Ding
<span title="2020-07-04">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
One of the essential Knowledge Discovery tools that could help the biomedical research community understand and eventually find a cure for COVID-19 are Knowledge Graphs.  ...  The virus's rapid widespread has led to a proliferation in biomedical research addressing the pandemic and its related topics.  ...  Jaewoo Kange's DMIS Lab team for pretraining BioBERT, Vinay Locharulu for suggestion and support, Prof. Jian Xu for providing PubMed Knowledge Graph, and Yifei Wu for conducting entity normalization.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2007.10287v1">arXiv:2007.10287v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rzgsevv3jrhvrh74s34qyjof4q">fatcat:rzgsevv3jrhvrh74s34qyjof4q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200808132144/https://arxiv.org/pdf/2007.10287v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2007.10287v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

JUZBOX: A web server for extracting biomedical words from the protein sequence

Bobby Paul, S. Balaji, V. Sathyanath, Santhosh J. Eapen
<span title="2009-10-19">2009</span> <i title="Biomedical Informatics"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/iztfdaqh6bclfpgb2mitxtn5sm" style="color: black;">Bioinformation</a> </i> &nbsp;
The recognition of gene/protein names in literature is one of the pivotal steps in the processing of biological literatures for information extraction or data mining.  ...  Undoubtedly, the generation of biomedical words from protein sequence using JUZBOX have applications specific for functional annotation.  ...  Acknowledgement: This work was supported by Distributed Information Sub Centre for Bioinformatics, Indian Institute of Spices Research, Calicut, Kerala, India.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6026/97320630004179">doi:10.6026/97320630004179</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20461154">pmid:20461154</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2859571/">pmcid:PMC2859571</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qz4asbof2bdbdhszz3l3br6l4i">fatcat:qz4asbof2bdbdhszz3l3br6l4i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20150924002622/http://bioinformation.net/004/004200042009.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b6/49/b649c8b1a99fc00c3180712f40a3c39452340511.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6026/97320630004179"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859571" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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