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Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek (+12 others)
2014 Nucleic Acids Research  
This article provides an overview of the scientific and training resources SIB has consistently been offering to the life science community for more than 15 years.  ...  The SIB Swiss Institute of Bioinformatics (www.isbsib.ch) was created in 1998 as an institution to foster excellence in bioinformatics.  ...  OVERVIEW OF SIB-FUNDED RESOURCES In the last 15 years, SIB and its current 46 research and services groups have created more than 100 bioinformatics services, databases and software tools.  ... 
doi:10.1093/nar/gku380 pmid:24792157 pmcid:PMC4086091 fatcat:ps6txa3xijhpxbpl2radc6dvdi

Fifteen years SIB Swiss Institute of Bioinformatics: Life science databases, tools and support

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frederique Lisacek (+12 others)
2014
This article provides an overview of the scientific and training resources SIB has consistently been offering to the life science community for more than 15 years.  ...  The SIB Swiss Institute of Bioinformatics (www.isbsib.ch) was created in 1998 as an institution to foster excellence in bioinformatics.  ...  ACKNOWLEDGMENTS As of April 2014, SIB encompasses more than 600 members, and many individuals have contributed to the resources we mentioned in this article.  ... 
doi:10.3929/ethz-b-000087287 fatcat:osljtp7c2vhlfjtpwb2w2u2lkq

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!

A. Bairoch
2000 Bioinformatics  
Therefore we propose the creation of a Swiss Institute of Bioinformatics (SIB).  ...  The goals of this institute are: • To promote the development of software tools and databases in the field of bioinformatics; • To sustain a high-quality research program in bioinformatics; • To provide  ... 
doi:10.1093/bioinformatics/16.1.48 pmid:10812477 fatcat:ifskveciunhybo2vevcsjtyo6e

Introduction to Bioinformatics [article]

Sabu M. Thampi
2009 arXiv   pre-print
of algorithms and statistics.  ...  This discipline represents the convergence of genomics, biotechnology and information technology, and encompasses analysis and interpretation of data, modeling of biological phenomena, and development  ...  Swiss-Prot and TrEMBL, developed in collaboration between the Swiss Institute of Bioinformatics and the European Bioinformatics Institute, are currently the major databases dedicated to cataloging protein  ... 
arXiv:0911.4230v1 fatcat:4trytpwrw5apvkiejbwhiqmp6m

Funding knowledgebases: Towards a sustainable funding model for the UniProt use case

Chiara Gabella, Christine Durinx, Ron Appel
2018 F1000Research  
Millions of life scientists across the world rely on bioinformatics data resources for their research projects.  ...  knowledgebases and deposition databases.  ...  Ioannis Xenarios for the fruitful discussions and valuable suggestions.  ... 
doi:10.12688/f1000research.12989.2 fatcat:npwar2kaffgcbfykpksds6all4

Funding knowledgebases: Towards a sustainable funding model for the UniProt use case

Chiara Gabella, Christine Durinx, Ron Appel
2017 F1000Research  
Millions of life scientists across the world rely on bioinformatics data resources for their research projects.  ...  knowledgebases and deposition databases.  ...  Ioannis Xenarios for the fruitful discussions and valuable suggestions.  ... 
doi:10.12688/f1000research.12989.1 pmid:29333230 pmcid:PMC5747334 fatcat:j5hyzmptdbh5nehlyhedswjiq4

Longevity of Biological Databases

Teresa K. Attwood, Bora Agit, Lynda B.M. Ellis
2015 EMBnet journal  
Those that survived were, for the most part, important to their institution's main focus, and had core institutional support.  ...  Many new databases are born each year; but how long do they live? This study looked at the 18-year survival of 326 databases.  ...  Acknowledgements The authors wish to thank the legions of scientists and educators who have developed and maintained biological Web-based databases, past and present.  ... 
doi:10.14806/ej.21.0.803 fatcat:x46gmsptcfdhzogq26rhgc2rvi

Measuring the scientific impact of e-research infrastructures: a citation based approach?

K. Jonkers, G. E. Derrick, C. Lopez-Illescas, P. Van den Besselaar
2014 Scientometrics  
The bioinformatic e-research infrastructure studied offers common tools used by life scientists to analyse and interpret genetic and protein sequence information.  ...  These e-resources therefore provide an interesting example with which to explore how representative citations are as acknowledgements of knowledge in the life sciences.  ...  SIB Swiss Institute of Bioinformatics allowed for the use of the server web log data used for part of this analysis.  ... 
doi:10.1007/s11192-014-1411-7 fatcat:zi3auowwzbgb7nduhdrhelyj7q

Rapport d'activités IFB 2019-2020 [article]

Claudine Médigue, Suzanne Lauriou, Angela Saenz, Jacques Van Helden, IFB Teams
2021 Zenodo  
the National Research Agency, and a strong commitment of our supporting institutions to open permanent positions.  ...  As the national infrastructure of bioinformatics and the French node of the European infrastructure ELIXIR, the Institut Français de Bioinformatique (IFB, alias ELIXIR-FR) is at the crossroads of these  ...  >> Detailed report of the survey  ... 
doi:10.5281/zenodo.5324333 fatcat:py5xp6q7ungkdevdqx25zxfwmq

Unlocking Big Data for better health

Steven Munevar
2017 Nature Biotechnology  
We provide the well-known UniProt resource in collaboration with the SIB Swiss Institute of Bioinformatics (SIB) and Protein Information Resource (PIR).  ...  , to support life science research and its translation to medicine and the environment, the bio-industries and society.  ... 
doi:10.1038/nbt.3918 pmid:28700551 fatcat:oqiurm5cgzec7lfenvjvlemxoy

Development of Bioinformatics Tools and Workflows for the Analysis of Cell Line Data

Thibault Robin, Amos Marc Bairoch, Frédérique Lisacek
2020
Frédérique Lisacek and Prof. Amos Bairoch for being the co-directors of my PhD thesis and supporting me all the way through.  ...  Frédérique Lisacek and Emma Ricart Altimiras for their support. The donors gave informed consent for the use of their semen for research purposes, and samples were anonymized.  ...  (UNIGE) and the Swiss Institute of Bioinformatics (SIB).  ... 
doi:10.13097/archive-ouverte/unige:143042 fatcat:yspp2pj2bbho7py3m5jebbqqqm

Bioinformatics tools to assist drug candidate discovery in venom gland transcriptomes

Dominique Kadio Koua, Ron David Appel, Frédérique Lisacek, Reto Stocklin
2012
This thesis reports the genesis of the design of TATools as exposed in two published articles and a manuscript (at this stage under revision) and it describes the final outcome of this work with the support  ...  Bioinformatics tools to assist drug candidate discovery in venom gland transcriptomes.  ...  We are also grateful to Frédérique Lisacek from the Swiss Institute of Bioinformatics for ongoing help. We would like to thank Dr Ron Hogg of OmniScience SA for editorial support.  ... 
doi:10.13097/archive-ouverte/unige:23951 fatcat:e4p2d7s3nve4dmutil7msltlpa

Stakeholder Roundtables

Karsten Gödderz, Ana Casino, Emily van Egmond, Luc Willemse, Xavier Vermeersch, Agnes Wijers, Jeroen Bloothoofd, Quentin Groom, Helen Hardy, Laurence Livermore, Naomi Cocks, Miriam van Walsum (+3 others)
2020 Zenodo  
The events were organised and planned by the respective task leaders for which the expertise was needed in collaboration with the leader of T9.3, CETAF (Consortium of European Taxonomic Facilities).  ...  Under the purview of Task 9.3, seven Roundtables were organised to gather focused expertise from outside the Project consortium.  ...  Identify and communicate with potential Partners: EMBL (ELIXIR Hub + EBI), SIB (Swiss Institute of Bioinformatics), DiSSCo and institutions, Zenodo, Pensoft, CoL (Catalogue of Life), GBIF.  ... 
doi:10.5281/zenodo.3632534 fatcat:pqde3z3hwfa2neslatrql2spuq

Swiss MedLab 2016 and 74th Annual Meeting of the Swiss Society of Microbiology SSM, Bern, 13–16 June 2016

2016 Clinical Chemistry and Laboratory Medicine  
Diagnosis or exclusion of ICAD remains challenging and dependent on clinical examination and imaging tools.  ...  Unauthenticated Download Date | 7/28/18 5:34 AM eA34 Swiss MedLab Congress 2016, June 13-16, Bern, Switzerland Method: Fifteen healthy volunteers were recruited and venous blood drawn into 4 blood collection  ...  KOHLER 2 1 Eawag, Swiss Federal Institute of Aquatic Science and Technology, Duebendorf, Switzerland, 2 IBP, Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, Swiss Federal Institute of  ... 
doi:10.1515/cclm-2016-0370 fatcat:mp5dvifsxvatjjc7n5bjd74mti

CESSDA SaW D3.5: Report on the state-of-the-art, obstacles, models and roadmaps for widening the data perimeter of the data services

Dimitra Kondyli, Georges Fragoulis, Apostolis Linardis, Nathalie Paton, Federico Zemborain, Pedro Moura Ferreira, Claudia Oliveira, Bárbara Rodrigues, Tomáš Čížek, Jindrich Krejci, Janez Štebe, Irena Vipavc Brvar (+6 others)
2017 Zenodo  
Experiences and best practices are presented in this report with the objective of providing a practical roadmap, given that widening of CESSDA needs to address new data sources and new actors.  ...  The task reviewed the state of play regarding specific data domains (data provided by academia, official statistics including administrative data, historical, health data and big data that means existing  ...  ETH Scientific IT Services / SIB Swiss Institute of Bioinformatics are developing a publication platform for open research data in Switzerland.  ... 
doi:10.5281/zenodo.3769608 fatcat:7n3pmitl2vbnlbhi7a3j6bkjwa
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