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SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions

E. R. Jefferson, T. P. Walsh, T. J. Roberts, G. J. Barton
2007 Nucleic Acids Research  
SNAPPI-DB contains structural data, down to the level of atom co-ordinates, for each structure in the Protein Data Bank (PDB) together with associated data including SCOP, CATH, Pfam, SWISSPROT, InterPro  ...  The API facilitates data access via PDB entries, domains and domain-domain interactions.  ...  ACKNOWLEDGEMENTS The authors thank the MSD group at EBI for discussions and  ... 
doi:10.1093/nar/gkl836 pmid:17202171 pmcid:PMC1899103 fatcat:2drxlpp77rae3kxvco2eq2nnnm

Architecture of basic building blocks in protein and domain structural interaction networks

H. S. Moon, J. Bhak, K. H. Lee, D. Lee
2004 Bioinformatics  
Motivation: The structural interaction of proteins and their domains in networks is one of the most basic molecular mechanisms for biological cells.  ...  We identified four basic and distinct elements in the model that explains protein interactions at the domain level.  ...  By November 2004, there are about 28 000 known protein structures and their complexes in the PDB, while sequences of more than 1.6 million proteins are known in the UniProt database.  ... 
doi:10.1093/bioinformatics/bti240 pmid:15613386 fatcat:zwqdboflffco5abygnzfnlvr2a