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Fast and accurate Slicewise OutLIer Detection (SOLID) with informed model estimation for diffusion MRI data

V. Sairanen, A. Leemans, C.M.W. Tax
<span title="">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
In this work, we present i) an automated tool coined SOLID for slicewise outlier detection prior to geometrical image transformation, and ii) a framework to naturally interpret data uncertainty information  ...  The informed model estimation framework was evaluated both in simulations and in vivo human data.  ...  Acknowledgements The authors thank Derek Jones for the valuable discussions and comments on the manuscript and Antti Kuronen for supporting the usage of the Alcyone computing cluster of the University  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.07.003">doi:10.1016/j.neuroimage.2018.07.003</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29981481">pmid:29981481</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/62x6hxskr5fh3nd5sx7rm5kljm">fatcat:62x6hxskr5fh3nd5sx7rm5kljm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507211943/https://helda.helsinki.fi/bitstream/handle/10138/310910/1_s2.0_S1053811918305950_main.pdf;jsessionid=358267C9015953469EE904F18F079163?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/96/6f/966fa35c516729b1491da022d93c4d788e613efd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2018.07.003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Track I

<span title="2014-01-01">2014</span> <i title="Walter de Gruyter GmbH"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xlgmydsyybgp7ackhxtt6mogy4" style="color: black;">Biomedical Engineering</a> </i> &nbsp;
We show that a properly designed and trained ESN is able to discriminate early and late granulopoietic cells in histopathological images of the human bone marrow with overall mean accuracy (±SD) of 0.846  ...  This work gives strong indication that ESNs are able to work even with raw image patches directly and do not necessarily require image pre-processing, or feature extraction prior to classification.  ...  This work has been supported Acknowledgement We thank the Ministry of Work, Social Integration and Welfare in collaboration with the Ministry of Economic Affairs, Energy and Industry and the Ministry  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/bmt-2014-5008">doi:10.1515/bmt-2014-5008</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25385893">pmid:25385893</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4o7vqkhdmfgk5fjzqpeh74x5te">fatcat:4o7vqkhdmfgk5fjzqpeh74x5te</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728085406/https://www.degruyter.com/downloadpdf/j/bmte.2014.59.issue-s1/bmt-2014-5008/bmt-2014-5008.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/47/1d/471d8d39c65e30809cb926be62e81618f8f604ff.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1515/bmt-2014-5008"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> degruyter.com </button> </a>

ACQUISITION, PROCESSING, AND ANALYSIS OF DIFFUSION TENSOR IMAGING AND ATROPHY MRI IN THE INJURED PEDIATRIC SPINAL CORD [article]

(:Unkn) Unknown, University, My, Nancy Pleshko, Feroze B. Mohamed
<span title="2020-11-04">2020</span>
Data for both healthy subjects and subjects with spinal cord injury is collected and significant correlations are shown between DTI and cord morphology metrics.  ...  correction, diffusion tensor estimation, region of interest analysis, and semi-automated cord cross sectional area measurement.  ...  Additionally, higher order diffusion models such as diffusion kurtosis imaging and NODDI may offer useful information with respect to spinal cord imaging while simultaneously providing DTI metrics [38  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.34944/dspace/3262">doi:10.34944/dspace/3262</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xfwxifcxhrf3nfsbyxvsfxya34">fatcat:xfwxifcxhrf3nfsbyxvsfxya34</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201109115303/https://scholarshare.temple.edu/bitstream/handle/20.500.12613/3280/TETDEDXMiddleton-temple-0225E-13109.pdf;jsessionid=859C606412A9183CACB556EA39CB1D62?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8a/1e/8a1e71332949b7e169da2c38e1fd833eeb86d5a9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.34944/dspace/3262"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Graphical methods for atlas-based segmentation and local disease grading in medical images

Lisa Koch, Daniel Rueckert, European Union; Engineering And Physical Sciences Research Council
<span title="2017-08-16">2017</span>
The proposed anatomical disease model was evaluated on a clinical brain MR dataset for differentiation between Alzheimer's disease patients and healthy elderly subjects.  ...  , and provide local disease scores in the images which express the estimated degree of pathology.  ...  applications such as synthesis and outlier detection.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.25560/49457">doi:10.25560/49457</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ewonbbzixzfmvoiwsn3cebnl5a">fatcat:ewonbbzixzfmvoiwsn3cebnl5a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200214062720/https://spiral.imperial.ac.uk:8443/bitstream/10044/1/49457/1/Koch-L-2017-PhD-Thesis.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c4/ae/c4ae83ab87fbab88234a254e4c01771c104ae7e8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.25560/49457"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Coupled Shape Models for the Diagnosis of Organ Motion Restriction

Tobias Sebastian Schwarz
<span title="">2011</span>
An automated coupled shape model segmentation scheme has been developed that incorporates mutual information on shape and geometry of correlated objects to cope with the difficulties found in the image  ...  data, showing 40% better results compared to single models.  ...  Most important, because fast dynamic MRI only provides 2D data, the measurements had to be transformed to percentages of FVC for comparison with volumetric spirometry.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11588/heidok.00011604">doi:10.11588/heidok.00011604</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zvcuw2fodnh3reosthe2ilkmwu">fatcat:zvcuw2fodnh3reosthe2ilkmwu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200301140849/http://archiv.ub.uni-heidelberg.de/volltextserver/11604/1/Dissertation_Schwarz_Tobias.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9b/4d/9b4d4c76b936fe85d370035664f0f25cb1ad8504.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.11588/heidok.00011604"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Detecting Early Choroidal Changes Using Piecewise Rigid Image Registration and Eye-Shape Adherent Regularization

Tiziano Ronchetti
<span title="">2020</span>
Furthermore, we are grateful for the commitment of the staff at the Hong Kong Polytechnic University's School of Optometry, who performed the challenging long term study with children and teenagers.  ...  Simon Rothenbühler and Dr. Emanuel Ramos de Carvalho for their assistance in the manual segmentations; their contributions to our research have been very valuable.  ...  Mismatches are rejected as outliers when they are below a predefined threshold or during the robust estimation of the transformation parameters.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5451/unibas-ep79183">doi:10.5451/unibas-ep79183</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nivsrb2sfrfhloaxks7uwpzpua">fatcat:nivsrb2sfrfhloaxks7uwpzpua</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210425195134/https://edoc.unibas.ch/79183/1/Dissertation_TizianoRonchetti_edoc_unibas_NEW.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/81/1a/811a0dd5f9df76c21c0b514d72fa862ba11f43ee.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5451/unibas-ep79183"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>