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Facilitating and Improving Environmental Research Data Repository Interoperability

Colin Smith
2021 Zenodo  
The effectiveness and efficiency of these services can vastly improve if repositories work together on the implementation of agreed upon standards and best practices.  ...  allow adoption of linked data techniques and distributed software development; and a common pattern of community engagement allows separation of data curation from storage and delivery, which will improve  ...  Facilitating and improving environmental research data repository interoperability. Data Science Journal, 17, p.22. DOI: http://doi.org/10.5334/dsj-2018-022 Slides: bit.ly/repo-interop  ... 
doi:10.5281/zenodo.5650049 fatcat:5tcpvunfqjg2xego22wk7tlzxm

Facilitating and Improving Environmental Research Data Repository Interoperability

Corinna Gries, Amber Budden, Christine Laney, Margaret O'Brien, Mark Servilla, Wade Sheldon, Kristin Vanderbilt, Dave Vieglais
2018 Data Science Journal  
Environmental research data repositories provide much needed services for data preservation and data dissemination to diverse communities with domain specific or programmatic data needs and standards.  ...  It will also facilitate contributions from investigators through standardized and streamlined workflows and provide increased visibility for the role of data managers and the curation services provided  ...  Simons, and B. Vandenberg. A big thank you goes to the reviewers of this manuscript for their scrutiny and extensive suggestions for improvements.  ... 
doi:10.5334/dsj-2018-022 fatcat:owoymzxe4jfy7fralwypvjcdf4

How the use of controlled, accepted vocabularies could be improved to achieve open-science outcomes

Alison Specht, Shelley Stall, Yasuhiro Murayama, Romain David, Margaret O'Brien
2022 Zenodo  
Another might be to get researchers to identify and engage with a CoreTrustSeal2 accredited repository for their project data at the start of the project.  ...  We must improve the situation for researchers and demonstrate to them that there is value in using standardised and accepted vocabularies and that this is an achievable part of their work, we miss fully  ...  Are there ways to improve acceptance and hence practice?  ... 
doi:10.5281/zenodo.6575345 fatcat:2fxs6jxtsnaazjorazhawns4m4

SwissEnvEO: A FAIR National Environmental Data Repository for Earth Observation Open Science

Gregory Giuliani, Hugues Cazeaux, Pierre-Yves Burgi, Charlotte Poussin, Jean-Philippe Richard, Bruno Chatenoux
2021 Data Science Journal  
Environmental scientific research is highly becoming data-driven and dependent on high performance computing infrastructures to process ever increasing large volume and diverse data sets.  ...  In response to these issues and the need to strengthen Open and Reproducible EO science, this paper presents SwissEnvEO, a Spatial Data Infrastructure complemented with digital repository capabilities  ...  ACKNOWLEDGEMENTS The views expressed in the paper are those of the authors and do not necessarily reflect the views of the institutions they belong to.  ... 
doi:10.5334/dsj-2021-022 fatcat:jkhm7ovzzff7rbffwmb6udkujq

Supporting knowledge creation and sharing by building a standardised interconnected repository of biodiversity data

Santiago Martinez de la Riva, Maria Giuffrida, Marieke Willems, Ángela Justamante Rodríguez
2022 Zenodo  
This EOSC in practice story was developed within the Cos4cloud project and targets a very wide user base as it is addressed to any researchers, teachers, students, companies, institutions and, more generally  ...  The story presents Cos4Bio, a co-designed, interoperable and open-source service that integrates biodiversity observations from multiple citizen observatories in one place, allowing experts to save time  ...  , while the service shall remain free for the experts and researchers using the data available on Cos4Bio.  ... 
doi:10.5281/zenodo.6516723 fatcat:fqxzrhnlzfez3affy3e5qd2i2a

Seven Recommendations to Make Your Invasive Alien Species Data More Useful

Quentin J. Groom, Tim Adriaens, Peter Desmet, Annie Simpson, Aaike De Wever, Ioannis Bazos, Ana Cristina Cardoso, Lucinda Charles, Anastasia Christopoulou, Anna Gazda, Harry Helmisaari, Donald Hobern (+18 others)
2017 Frontiers in Applied Mathematics and Statistics  
Standardization and interoperability are particularly important as many alien species related research and policy activities require pooling data.  ...  If we improve core biodiversity data standards by developing their relevance to alien species, it will allow the automation of common activities regarding data processing in support of environmental policy  ...  Any use of trade, product, or firm names in this article is for descriptive purposes only and does not imply endorsement by the U.S. Government.  ... 
doi:10.3389/fams.2017.00013 fatcat:h3zwiw5bbbaixfhrqdldzpep2y

A standardisation framework for bio‐logging data to advance ecological research and conservation

Ana M.M. Sequeira, Malcolm O'Toole, Theresa R. Keates, Laura H. McDonnell, Camrin D. Braun, Xavier Hoenner, Fabrice R.A. Jaine, Ian D. Jonsen, Peggy Newman, Jonathan Pye, Steven J. Bograd, Graeme C. Hays (+30 others)
2021 Methods in Ecology and Evolution  
and Technology) and involving the use of simple templates to create a data flow from manufacturers and researchers to compliant repositories, where automated procedures should be in place to prepare data  ...  A set of universal standards is needed to ensure discoverability, interoperability and effective translation of bio-logging data into research and management recommendations. 2.  ...  We propose that compliant repositories automate processing bio-logging data into four levels (described below) compiled to maximise interoperability and facilitate scientific discovery.  ... 
doi:10.1111/2041-210x.13593 fatcat:rfe5m66n25ei3c6i7snraoicd4

EMPHASIS-PREP Deliverable 4.3: Link with other information systems

Francois Tardieu, Pascal Neveu, Cyril Pommier, Roland Pieruschka, Clément Saint Cast, Xavier Draye, Llorenç Cabrera Bosquet, Björn Usadel
2019 Zenodo  
tasks that will facilitate interoperability between information systems.  ...  Main results The information systems developed by different communities for phenotypic data differ in their organization and content.  ...  -Enable data, tools and repositories interoperability by seeking collaboration with relevant communities to build and recommend standards, metadata and repositories.  ... 
doi:10.5281/zenodo.3766987 fatcat:svwttfpmtbd55mmoixb4dyrhqi

D2.3 Set of FAIR data repositories features

Claudia Behnke, Luiz Bonino, Gerard Coen, Yann Le Franc, Jessica Parland-von Essen, Leah Riungu-Kalliosaari, Christine Staiger
2020 Zenodo  
Humanities (SSH), the Integrated Carbon Observation System (ICOS), the European network of Long-Term Ecosystem Research sites (eLTER), and the Data Publisher for Earth & Environmental Science ( Pangea  ...  The recommendations were collected in the workshop "Building the data landscape of the future: FAIR Semantics and FAIR Repositories" (22 October 2019, Espoo Finland) that was hosted by this task together  ...  This is achieved by offering a generic and abstracting interoperability layer, which improves the interoperability between repositories themselves to access data and information.  ... 
doi:10.5281/zenodo.5356316 fatcat:bb42o5btgbe2ze3dwgnrv5u25u

The use of controlled, accepted, preferably multi-lingual, vocabularies can help achieve open-science outcomes

Alison Specht, Shelley Stall, Yasuhiro Murayma, Romain David, Margaret O'Brien
2022 Zenodo  
with an intended repository (TRUSTed of course), and to provide educational packages.  ...  Environmental science teams are characteristically multi-disciplinary, multi-national, and multi-organisational.  ...  from FAPESP, the ANR, JST and the NSF, with collaborators from Australia, and support from the synthesis centre CESAB of the French Foundation for Research on Biodiversity.  ... 
doi:10.5281/zenodo.6621968 fatcat:f342pikwtbddpequ4ujjrbcbzi

Building a Biomedical Cyberinfrastructure for Collaborative Research

Peter A. Schad, Lee Rivers Mobley, Carol M. Hamilton
2011 American Journal of Preventive Medicine  
The need for coordinated development of cyberinfrastructure to support collaboration and data interoperability is clear, and we discuss standard protocols for ensuring data compatibility and interoperability  ...  Establishing and maintaining the cyberinfrastructure will require a fundamental change in the way researchers think about study design, collaboration, and data storage and analysis.  ...  An effective translational medicine research environment requires semantic interoperability among researchers and clinicians.  ... 
doi:10.1016/j.amepre.2011.01.018 pmid:21521587 pmcid:PMC5817638 fatcat:dudio5hulnhv7cbfo34sbmwlse

D2.3 Set of FAIR data repositories features

Claudia Behnke, Luiz Bonino, Gerard Coen, Yann Le Franc, Jessica Parland-von Essen, Leah Riungu-Kalliosaari, Christine Staiger
2020 Zenodo  
Humanities (SSH), the Integrated Carbon Observation System (ICOS), the European network of Long-Term Ecosystem Research sites (eLTER), and the Data Publisher for Earth & Environmental Science ( Pangea  ...  The recommendations were collected in the workshop "Building the data landscape of the future: FAIR Semantics and FAIR Repositories" (22 October 2019, Espoo Finland) that was hosted by this task together  ...  This is achieved by offering a generic and abstracting interoperability layer, which improves the interoperability between repositories themselves to access data and information.  ... 
doi:10.5281/zenodo.3631528 fatcat:neafsfx7mbfkvpj6cevqixyv6a

Environmental Data Initiative (EDI): Serving the OBFS Community

Kristin Vanderbilt, James Brunt, Duane Costa, Corinna Gries, Paul Hanson, Margaret O'Brien, Mark Servilla, Robert Waide
2021 Zenodo  
Generate metadata as EML for researcher Submit data packages to the EDI repository EDI Data Repository Features  Is a mature, sustainable and secure data repository, implemented in the Provenance  ...  Mission Expand and accelerate the curation, archiving, dissemination, and reusability of environmental data, with emphasis on data from projects funded by the NSF DEB (OBFS, LTREB, LTER, and MSB) Enable  ...  providing more opportunities for training in informatics Goals Ensure that environmental data are deposited into a data repository for long-term preservation and data integrity Ensure that environmental  ... 
doi:10.5281/zenodo.5551084 fatcat:hzbmpi277nczner7pjj6eye4tu

EarthCube Resources for the NSF Geo Domain-Data Workshops 2018-2019.pdf

Ouida W. Meier, D. Sarah Stamps, Lynne Schreiber
2018 Zenodo  
The NSF funded EarthCube initiative began in 2011 with the vision to transform geoscience research by developing cyberinfrastructure to improve access, sharing, visualization, and analysis of all forms  ...  of geosciences data and related resources.  ...  members and project participants.  ... 
doi:10.5281/zenodo.3371777 fatcat:fqphetw6c5fqrk6pvbr4idsnc4

Towards semantic interoperability in an open IoT ecosystem for connected vehicle services

Niklas Kolbe, Sylvain Kubler, Jeremy Robert, Yves Le Traon, Arkady Zaslavsky
2017 2017 Global Internet of Things Summit (GIoTS)  
Restricted access to data sources and services limits the capabilities of a smart city to improve social, environmental and economic aspects.  ...  Interoperability in the IoT is concerned with both, messaging interfaces and semantic understanding of heterogeneous data.  ...  ACKNOWLEDGMENT The research leading to this publication is supported by the EUs H2020 Programme for research, technological development and demonstration (grant 688203).  ... 
doi:10.1109/giots.2017.8016229 dblp:conf/giots/KolbeKRTZ17 fatcat:6a2fo6btbnhkvdat76gwwd7jra
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