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FRED 2: an immunoinformatics framework for Python
2016
Bioinformatics
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Here we present FRED 2, an open-source immunoinformatics framework offering easy and unified access to methods for epitope prediction and other immunoinformatics applications. ...
FRED 2 is implemented in Python and designed to be extendable and flexible to allow rapid prototyping of complex applications. Availability and implementation: FRED 2 is available at http://fred-2 ...
We therefore developed FRamework for Epitope Detection (FRED 2) , an opensource, Python-based framework for computational immunology. ...
doi:10.1093/bioinformatics/btw113
pmid:27153717
pmcid:PMC4920123
fatcat:n6bpuacbijb33ee5rdnhi6drku
FRED--a framework for T-cell epitope detection
2009
Bioinformatics
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We have developed FRED, an extendable, open source software framework for key tasks in immunoinformatics. ...
FRED is implemented in Python in a modular way and allows the integration of external methods. Availability: FRED is freely available for download at ...
CONCLUSIONS FRED is a valuable tool for performing large-scale analyses in immunoinformatics with different prediction methods and is also a software framework for the development of novel immunoinformatics ...
doi:10.1093/bioinformatics/btp409
pmid:19578173
pmcid:PMC2759545
fatcat:3a6mb3q7hfac7c27ucb7vmxgye
ImmunoNodes – graphical development of complex immunoinformatics workflows
2017
BMC Bioinformatics
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FRED 2 is an immunoinformatics Python module that provides standardized interfaces to the immunoinformatics software. ...
For further infromation, see the installation guide at https://github.com/FRED-2/ ImmunoNodes. KNIME can be downloaded from https://www.knime.org. ...
doi:10.1186/s12859-017-1667-z
pmid:28482806
pmcid:PMC5422934
fatcat:4lbfdtf4xvg7jkpl6ox7vdvep4
Tracking the pipeline: immunoinformatics and the COVID-19 vaccine design
2021
Briefings in Bioinformatics
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Here, we discuss how immunoinformatics can assist in the development of high-performance vaccines and drug discovery needed to curb the spread of SARS-CoV-2. ...
With the onset of the COVID-19 pandemic, the amount of data on genomic and proteomic sequences of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) stored in various databases has exponentially ...
Mohammad Akhlaghi from Instituto de Astrofísica de Canarias (IAC) for help with the application of Maneage program. ...
doi:10.1093/bib/bbab241
pmid:34219142
fatcat:qkrlrtrnt5c6dndo3uv5lkyhae
The 18th European Symposium on Quantitative Structure–Activity Relationships
2011
Expert Opinion on Drug Discovery
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Acknowledgements This research was partly funded by the EU FP7 project OpenTox -An Open Source Predictive Toxicology Framework (Health-F5-2008-200787) and the German Federal Ministry for the Environment ...
Acknowledgements This research was partly funded by the EU FP7 project OpenTox -An Open Source Predictive Toxicology Framework (Health-F5-2008-200787) and the German Federal Ministry for the Environment ...
R., Doytchinova, I Faculty of Pharmacy, Medical University of Sofia, 2 Dunav str, 1000 Sofia, Bulgaria T-cell epitope identification is a critical immunoinformatic problem for vaccine design. ...
doi:10.1517/17460441.2011.560604
pmid:22646021
fatcat:tb4bhvtnpzahxm4xba7iw4afuy