Filters








9 Hits in 4.0 sec

FLOPO - An Ontology for the Integration of Trait Data from Digitized Floras and Plant Image Collections

Claus Weiland, Robert Hoehndorf, George Gosline, Quentin Groom, Thomas Hamann, Marco Schmidt
2016 Workshop on Semantic Web Applications and Tools for Life Sciences  
We have developed the Flora Phenotype Ontology (FLOPO [2]), an ontology for describing traits of plant species found in Floras.  ...  There are large biodiversity data collections which are a potentially rich source of such plant trait data: -Floras describe plant traits with a focus on morphology or habitus relevant for species identification  ... 
dblp:conf/swat4ls/WeilandHGGHS16 fatcat:ksxwlmv6wfe4nexrhn5rz46gyu

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf, Mona Alshahrani, Georgios V. Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt, Soraya Sierra, Erik Smets, Rutger A. Vos (+1 others)
2016 Journal of Biomedical Semantics  
Results: We have developed the Flora Phenotype Ontology (FLOPO), an ontology for describing traits of plant species found in Floras.  ...  We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based  ...  Acknowledgements The initial draft of the Flora Phenotype Ontology was created at the 2014 Biodiversity Data Enrichment Hackathon (Leiden, the Netherlands).  ... 
doi:10.1186/s13326-016-0107-8 pmid:27842607 pmcid:PMC5109718 fatcat:6zvlw2avc5hjvpf3irxyboxufi

Enriched biodiversity data as a resource and service

Rutger Vos, Jordan Biserkov, Bachir Balech, Niall Beard, Matthew Blissett, Christian Brenninkmeijer, Tom van Dooren, David Eades, George Gosline, Quentin Groom, Thomas Hamann, Hannes Hettling (+23 others)
2014 Biodiversity Data Journal  
Acknowledgements The Biodiversity Data Enrichment Hackathon was supported by the EU-funded pro-iBiosphere project (Coordination and policy development in preparation for a European Open Biodiversity Knowledge  ...  Management System, addressing Acquisition, Curation, Synthesis, Interoperability and Dissemination, grant No 312848) and Naturalis Biodiversity Center.  ...  FORMALISING AND LINKING CONCEPTS Trait ontology • Extract and ontologise plant trait data from digitized Floras. SWeDe • Produce a standard for describing scientific web services.  ... 
doi:10.3897/bdj.2.e1125 pmid:25057255 pmcid:PMC4092319 fatcat:knyjmsmbcnbrpai6awxgfhrrgy

Cyberinfrastructure and resources to enable an integrative approach to studying forest trees

Jill L Wegrzyn, Taylor Falk, Emily Grau, Sean Buehler, Risharde Ramnath, Nic Herndon
2019 Evolutionary Applications  
Successful implementation of life science cyberinfrastructure is improving data standards, ontologies, analytic workflows, and integrated database platforms for both model and non-model plant species.  ...  Genomic data from these projects generates sequences that represent intermediate assemblies for transcriptomes and genomes.  ...  The ecology and phylogenetic community recently released the Plant Phenology Ontology (PPO) and Flora Phenotype Ontology (FLOPO).  ... 
doi:10.1111/eva.12860 pmid:31892954 pmcid:PMC6935593 fatcat:r2zcwfc7irdgdln4faunycp3ui

Towards global data products of Essential Biodiversity Variables on species traits

W. Daniel Kissling, Ramona Walls, Anne Bowser, Matthew O. Jones, Jens Kattge, Donat Agosti, Josep Amengual, Alberto Basset, Peter M. van Bodegom, Johannes H. C. Cornelissen, Ellen G. Denny, Salud Deudero (+17 others)
2018 Nature Ecology & Evolution  
We evaluate the societal relevance of species traits EBVs for policy targets and demonstrate how open, interoperable and machine-readable trait data enable the building of EBV data products.  ...  We outline collection methods, meta(data) standardization, reproducible workflows, semantic tools and licence requirements for producing species traits EBVs.  ...  Examples for plant traits include the Thesaurus of Plant Characteristics (TOP) 11 , the Flora Phenotype Ontology (FLOPO) 64 , the Plant Trait Ontology (TO) 65 and the PPO 73 .  ... 
doi:10.1038/s41559-018-0667-3 pmid:30224814 fatcat:ocmffeznebanfenwy33nuhakre

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Ramona Walls, Carson Andorf, Elizabeth Arnaud, Tanya Z Berardini, Clayton Birkett, Steve Cannon, James Carson (+40 others)
2018 Database: The Journal of Biological Databases and Curation  
Database URL: https://www.agbiodata.org CMO http://obofoundry.org/ontology/cmo.html Crop Ontology a collection of vocabularies that describe breeders' traits for agriculturally important plants: banana  ...  Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses.  ...  Acknowledgements We acknowledge with thanks The National Science Foundation Plant Genome Research Program Award # 1444573 for funding the AgBioData Workshop and development and hosting of the AgBio-Data  ... 
doi:10.1093/database/bay088 pmid:30239679 pmcid:PMC6146126 fatcat:spcxmd66qrgdnos4larqfvf6ai

Proceedings of the 10th International Conference on Ecological Informatics: translating ecological data into knowledge and decisions in a rapidly changing world: ICEI 2018

International Conference On Ecological Informatics, Thüringer Universitäts- Und Landesbibliothek Jena, Jitendra Gaikwad
2018
The Conference Proceedings are an impressive display of the current scope of Ecological Informatics.  ...  The here presented ICEI 2018 abstracts captures well current trends and challenges of Ecological Informatics towards: • regional, continental and global sharing of ecological data, • thorough integration  ...  We further give insight into our work on the OBO Foundry Flora Phenotype Ontology (FLOPO) and the Lepidoptera Anatomy Ontology (LepAO).  ... 
doi:10.22032/dbt.37846 fatcat:abpbnzmatncp7piugi3udxzcxu

Proceedings of the 10th International Conference on Ecological Informatics: translating ecological data into knowledge and decisions in a rapidly changing world: ICEI 2018

International Conference On Ecological Informatics, Thüringer Universitäts- Und Landesbibliothek Jena, Jitendra Gaikwad
2019
The Conference Proceedings are an impressive display of the current scope of Ecological Informatics.  ...  The here presented ICEI 2018 abstracts captures well current trends and challenges of Ecological Informatics towards: • regional, continental and global sharing of ecological data, • thorough integration  ...  We further give insight into our work on the OBO Foundry Flora Phenotype Ontology (FLOPO) and the Lepidoptera Anatomy Ontology (LepAO).  ... 
doi:10.22032/dbt.38375 fatcat:qwx5h42r4zdibdhwjxtpcia6oe

An ontology and crowd computing model for expert-citizen knowledge transfer in biodiversity management Publications from this research

Caroline Kiptoo, Prof Aurona, Gerber Prof, Alta Van Der Merwe, Caroline Chepkoech, Kiptoo Supervisor, Prof, Aurona Gerber, Alta Van Der Merwe, C Kiptoo
2017 unpublished
II © University of Pretoria Declaration I declare that, "An ontology and crowd computing model for expert-citizen knowledge transfer in biodiversity management" is the result of my own work and that resources  ...  An experiment using the case demonstrated that the challenges facing knowledge transfer in the domain could be reduced through ontological modelling of domain knowledge and harnessing of online crowds  ...  Dr Sunday Ekesi, and his research team for providing the material for the fruit fly case used in this research 4. Reviewers and editors of the works published during this research.  ... 
fatcat:pggrnr6u5naytlf2lqnamck2vi