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FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants

F. Samson
<span title="2002-01-01">2002</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
A large collection of T-DNA insertion transformants of Arabidopsis thaliana has been generated at the Institute of Agronomic Research, Versailles, France.  ...  The molecular characterisation of the insertion sites is currently performed by sequencing genomic regions flanking the inserted T-DNA (FST).  ...  ACKNOWLEDGEMENTS We thank the staff of Génoplante-Info and Infobiogen for their help and cooperation in maintaining FLAGdb/FST on their site. This work was supported by the French Génoplante Program.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/30.1.94">doi:10.1093/nar/30.1.94</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11752264">pmid:11752264</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC99145/">pmcid:PMC99145</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cwalpa46jfcvfgfgwwcpdwlg7e">fatcat:cwalpa46jfcvfgfgwwcpdwlg7e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808050134/http://www-ijpb.versailles.inra.fr/en/plateformes/cra/fichiers/Samson_2002.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ec/2c/ec2c3e05c34f1b53bd40ac03410c83cce55b41fa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/30.1.94"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC99145" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana

Y. Li, M. G. Rosso, N. Strizhov, P. Viehoever, B. Weisshaar
<span title="2003-07-21">2003</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project.  ...  Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived.  ...  ACKNOWLEDGEMENTS The authors thank all members of the GABI-Kat and the ADIS teams for greenhouse and laboratory work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btg170">doi:10.1093/bioinformatics/btg170</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12874060">pmid:12874060</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wsq56e5ldjbldl5cwzmxgal3da">fatcat:wsq56e5ldjbldl5cwzmxgal3da</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728190953/https://watermark.silverchair.com/btg170.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAcAwggG8BgkqhkiG9w0BBwagggGtMIIBqQIBADCCAaIGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMqVFj8DmdNYVoR4FbAgEQgIIBc3K0r23vK2AYU5jk2lhjhUg9v7m9GpYmBlu60f8Z3yUpieY14_v5O7pWxhXbLT2c6PFXtmfUp6X50YKqn2JKBoQ0eWZMQhgZM3dmeivanjkyaVZyBpGjUEfzoRKgH5e8RN_OOZ-DSbqKfHRMlagPZ78VpdywRZhddbl6XEtu4Z5q48oHJeSbl3r__uoYXGOPMbolOkQJWua3k1ZdbsITqa_XgVFPXolYAsXBuBfm4XTlrWCykabhSMTGd3jrmvQtJBUJW7rOHs0QjgXNCpg_AXNxB-rEESeFS4jz8PJP4WAOoKc9cyXqUGPEZ1J0OUmp-VlQSgYrcYvZJEGYhwySe_PeJxQCa3Dvlf55vFyNvIiMRozlnyFrkjgL7m9Q6luTQKUv-HFsd4ohRkrStF1DN2TBOlVETh3LuStTpTyZeiHIF1ZXGLO_594hoGPR_TTqsI8jhiXSng9kmTkPGoLnyy445Y_oHiITNXW7-9Ueo2RXzgHV" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ec/15/ec15894b9ca4bedaa660aa22d351641d463a7d7a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btg170"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

T-DNA–mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants

Bekir Ülker, Yong Li, Mario G Rosso, Elke Logemann, Imre E Somssich, Bernd Weisshaar
<span title="2008-08-31">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/t2bqrmk7orfmxpqzqwiiyjwide" style="color: black;">Nature Biotechnology</a> </i> &nbsp;
) in a WRKY40 promoter::GUS line generated by Hikaru Seki, Prisca Viehoever for technical assistance and Csaba Koncz and Steven Spiker for suggestions and critical reading of the manuscript.  ...  ACKNOWLEDGMENTS We thank the students Pino Cagna and Alexander Boes for initial inverse PCR experiments leading to the discovery of the Agrobacterium chromosomal DNA in the transgenic locus named PM (PaperMaker  ...  Therefore, we analyzed databases that contain A. thaliana-flanking sequence tags (FSTs) [6] [7] [8] [9] , the sequences that flank T-DNA insertion sites in populations of insertion lines generated to  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt.1491">doi:10.1038/nbt.1491</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18758448">pmid:18758448</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/etawsiompzdodhay37pt6c26zq">fatcat:etawsiompzdodhay37pt6c26zq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809160449/http://fbae.org/2009/FBAE/website/images/PDF%20files/Imporatant%20Publication/T-DNA%20Mediated%20Plant%20Transformation.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/91/1d/911d2fb8280f1495f848ef622a805bd8d3d0548f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nbt.1491"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites

V. Brunaud
<span title="2002-11-21">2002</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ad4yn77omvbz5mxraouyuuhroq" style="color: black;">EMBO Reports</a> </i> &nbsp;
A statistical analysis of 9000 flanking sequence tags characterizing transferred DNA (T-DNA) transformants in Arabidopsis sheds new light on T-DNA insertion by illegitimate recombination.  ...  The sequence immediately downstream of the plant A-T-rich region is the master element for setting up the DNA duplex, and deletions into the left end of the integrated T-DNA depend on the location of a  ...  We have produced flanking sequence tags (FSTs) for >18 000 A. thaliana T-DNA transformants (Balzergue et al., 2001) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/embo-reports/kvf237">doi:10.1093/embo-reports/kvf237</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12446565">pmid:12446565</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1308325/">pmcid:PMC1308325</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qiiudttxnrh6lelzhwz4n5cmgu">fatcat:qiiudttxnrh6lelzhwz4n5cmgu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808163351/http://www-ijpb.versailles.inra.fr/fr/plateformes/cra/fichiers/Brunaud_2002.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/76/39/7639c2b436e7c0ea08f238692af1847617286e63.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/embo-reports/kvf237"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1308325" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Page 935 of Cellular and Molecular Life Sciences Vol. 60, Issue 5 [page]

<span title="">2003</span> <i title="Springer Science &amp; Business Media"> <a target="_blank" rel="noopener" href="https://archive.org/details/pub_cellular-and-molecular-life-sciences" style="color: black;">Cellular and Molecular Life Sciences </a> </i> &nbsp;
., Pelletier G. et al. (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.  ...  A. and Steponkus P. L. (1995) Cold acclimation in Arabidopsis thaliana.  ... 
<span class="external-identifiers"> </span>
<a target="_blank" rel="noopener" href="https://archive.org/details/sim_cellular-and-molecular-life-sciences_2003-05_60_5/page/935" title="read fulltext microfilm" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Archive [Microfilm] <div class="menu fulltext-thumbnail"> <img src="https://archive.org/serve/sim_cellular-and-molecular-life-sciences_2003-05_60_5/__ia_thumb.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Analysis of T-DNA insertion site distribution patterns in Arabidopsis thaliana reveals special features of genes without insertions

Yong Li, Mario G. Rosso, Bekir Ülker, Bernd Weisshaar
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/z3egmghp4rdu7dxxr3ldohtkma" style="color: black;">Genomics</a> </i> &nbsp;
Flanking sequence tag (FST) data from these collections indicated that T-DNA insertions are not randomly distributed in the Arabidopsis thaliana genome and that there are still a fairly high number of  ...  Additionally, a refined analysis of FSTs to genes with annotated noncoding regions showed that transcription initiation and polyadenylation site regions of genes are favored targets for T-DNA integration  ...  Acknowledgments We are grateful to FLAGdb/FST, France, and SIGnAL, Salk Institute, USA, for making the T-DNA sequence data public and to Csaba Koncz (MPI for Plant Breeding Research) for sharing unpublished  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ygeno.2005.12.010">doi:10.1016/j.ygeno.2005.12.010</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16488113">pmid:16488113</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/hnig3bxqsrap7ec3izncxp6via">fatcat:hnig3bxqsrap7ec3izncxp6via</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170816165928/http://pubman.mpdl.mpg.de/pubman/item/escidoc:1221917/component/escidoc:1221916/li_genomics_2006.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/02/1e/021e4657013ed712827dbcd819a9c0c18ad05d19.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ygeno.2005.12.010"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Directions for research and training in plant omics: Big Questions and Big Data

Cristiana T. Argueso, Sarah M. Assmann, Kenneth D. Birnbaum, Sixue Chen, José R. Dinneny, Colleen J. Doherty, Andrea L. Eveland, Joanna Friesner, Vanessa R. Greenlee, Julie A. Law, Amy Marshall-Colón, Grace Alex Mason (+8 others)
<span title="2019-04-23">2019</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a7p5unsuyff7bnvxtpt272ocfq" style="color: black;">Plant Direct</a> </i> &nbsp;
A key remit of the NSF-funded "Arabidopsis Research and Training for the 21st Century" (ART-21) Research Coordination Network has been to convene a series of workshops with community members to explore  ...  issues concerning research and training in plant biology, including the role that research using Arabidopsis thaliana can play in addressing those issues.  ...  mutant collection Samson et al. (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants Large scale insertional mutant collection Sessions et  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pld3.133">doi:10.1002/pld3.133</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31245771">pmid:31245771</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6589541/">pmcid:PMC6589541</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gwcnbgow3jcqlpzth7ufcotazi">fatcat:gwcnbgow3jcqlpzth7ufcotazi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210526223231/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6589541&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/77/83/7783562fd7b57888136ac3325a4072048b6e27ef.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pld3.133"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589541" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Non-specific activities of the major herbicide-resistance gene BAR

Bastien Christ, Ramon Hochstrasser, Luzia Guyer, Rita Francisco, Sylvain Aubry, Stefan Hörtensteiner, Jing-Ke Weng
<span title="2017-11-27">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/oo7yx6isajabvnfxnd4hzq7ok4" style="color: black;">Nature Plants</a> </i> &nbsp;
Combining 21 metabolomics, plant genetics, and biochemical approaches, we show that transgenic 22 LC/MS solvents (Fisher Chemical) with a gradient (flow rate of 0.6 mL min -1 ) of solvent Peak area (a.u  ...  Non-specific activities of the major herbicide-resistance gene BAR.  ...  FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of 301 Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res. 30, 94-97 (2002). 302 10 Sessions, A. et al.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41477-017-0061-1">doi:10.1038/s41477-017-0061-1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29180815">pmid:29180815</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/azyuusyqpvfkfaiqaalgohraaa">fatcat:azyuusyqpvfkfaiqaalgohraaa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200218030154/https://www.zora.uzh.ch/id/eprint/148877/1/Christ_NaturePlants_2017.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/69/7169153bb35a7f9f2a9ea12c47b2433f65558358.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/s41477-017-0061-1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

The GCP3-Interacting Proteins GIP1 and GIP2 Are Required for -Tubulin Complex Protein Localization, Spindle Integrity, and Chromosomal Stability

N. Janski, K. Masoud, M. Batzenschlager, E. Herzog, J.-L. Evrard, G. Houlne, M. Bourge, M.-E. Chaboute, A.-C. Schmit
<span title="2012-03-01">2012</span> <i title="American Society of Plant Biologists (ASPB)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7pnzchqufndppouyp5zmtlhwom" style="color: black;">The Plant Cell</a> </i> &nbsp;
In this work, two Arabidopsis thaliana proteins interacting with GAMMA-TUBULIN COMPLEX PROTEIN3 (GCP3), GCP3-INTERACTING PROTEIN1 (GIP1) and GIP2, have been characterized.  ...  Altogether, our data show that during mitosis GIPs play a role in g-tubulin complex localization, spindle stability and chromosomal segregation.  ...  We thank Bo Liu for the gift of anti-GCP4 antibodies and Christophe Himber for providing the GFP-expressing Arabidopsis line. We also thank Jé rô me Mutterer and Malek Alouia for their help.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1105/tpc.111.094904">doi:10.1105/tpc.111.094904</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22427335">pmid:22427335</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3336128/">pmcid:PMC3336128</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/agjz6uu4rnfitfcdzo3rlwhppe">fatcat:agjz6uu4rnfitfcdzo3rlwhppe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190219080739/http://pdfs.semanticscholar.org/1753/cbc43461ab671384139c185cb62c71b32758.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/17/53/1753cbc43461ab671384139c185cb62c71b32758.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1105/tpc.111.094904"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3336128" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

An Immune-Responsive Cytoskeletal-Plasma Membrane Feedback Loop in Plants

Stefan Sassmann, Cecilia Rodrigues, Stephen W. Milne, Anja Nenninger, Ellen Allwood, George R. Littlejohn, Nicholas J. Talbot, Christian Soeller, Brendan Davies, Patrick J. Hussey, Michael J. Deeks
<span title="">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/waxwzq3cnbet3cmwccpuk4bel4" style="color: black;">Current Biology</a> </i> &nbsp;
disruption of FORMIN4 and close homologs causes a defense phenotype d Transport and localization of FORMIN4 is distinct from key defense protein PEN3  ...  Graphical Abstract Highlights d FORMIN4 is delivered to sites of cell wall reinforcement during immune responses d Delivery requires actin filaments and causes local enhancement of actin dynamics d Genetic  ...  ., and Lecharny, A. (2002). FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res. 30, 94-97. 38.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cub.2018.05.014">doi:10.1016/j.cub.2018.05.014</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29937351">pmid:29937351</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6041470/">pmcid:PMC6041470</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rmfuc2p6cngkddpwy7gjdgajoa">fatcat:rmfuc2p6cngkddpwy7gjdgajoa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426231333/http://eprints.whiterose.ac.uk/132601/8/1-s2.0-S096098221830616X-main.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/60/3f/603f21934a4bf233cfb963593f4fe59faa9249ed.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cub.2018.05.014"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6041470" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

BIN2 Functions Redundantly with Other Arabidopsis GSK3-Like Kinases to Regulate Brassinosteroid Signaling

Z. Yan, J. Zhao, P. Peng, R. K. Chihara, J. Li
<span title="2009-04-24">2009</span> <i title="American Society of Plant Biologists (ASPB)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lyouqq67dncvxgcbflq26svwta" style="color: black;">Plant Physiology</a> </i> &nbsp;
Surprisingly, the bin2bil1bil2 triple T-DNA insertional mutant still responds to BR and accumulates a more phosphorylated form of a BIN2 substrate than the wild-type plant.  ...  Here, we report the identification of eight ethyl methanesulfonate-mutagenized loss-of-function bin2 alleles and one T-DNA insertional mutation each for BIN2 and its two closest homologs, BIN2-Like1 and  ...  to screen bil1 and bil2 T-DNA insertional mutants.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1104/pp.109.138099">doi:10.1104/pp.109.138099</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19395409">pmid:19395409</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2689954/">pmcid:PMC2689954</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ljse6gnhave2xmd7hf4qy7pgxq">fatcat:ljse6gnhave2xmd7hf4qy7pgxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501082341/http://www.plantphysiol.org/content/plantphysiol/150/2/710.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/de/09/de097d2fc6ef9e3609232b1d72c6491a965865a0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1104/pp.109.138099"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689954" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Recently discovered functions of glucosylceramides in plants and fungi

D. Warnecke, E. Heinz
<span title="">2003</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a5zaemqj4za4nekjggicuat22q" style="color: black;">Cellular and Molecular Life Sciences (CMLS)</a> </i> &nbsp;
., Pelletier G. et al. (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants.  ...  Since the complete genomic se- quence of A. thaliana is available [31] and the sequencing of genomic regions flanking the inserted T-DNA is cur- rently in progress for some mutant collections, mutants  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00018-003-2243-4">doi:10.1007/s00018-003-2243-4</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12827281">pmid:12827281</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/u7u6h2uk5jfv7pddbo5ihpjj6q">fatcat:u7u6h2uk5jfv7pddbo5ihpjj6q</a> </span>
<a target="_blank" rel="noopener" href="https://archive.org/details/sim_cellular-and-molecular-life-sciences_2003-05_60_5/page/919" title="read fulltext microfilm" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Archive [Microfilm] <div class="menu fulltext-thumbnail"> <img src="https://archive.org/serve/sim_cellular-and-molecular-life-sciences_2003-05_60_5/__ia_thumb.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00018-003-2243-4"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Identification and characterization of regulatory genes associated with secondary wall formation in Populus and Arabidopsis thaliana

Eryang Li
<span title="">2009</span>
T-DNA insertion mutants for most candidate genes were characterized, but only homeodomain transcription factor KNAT7 (At1g62990) T-DNA insertion mutants exhibited an obvious phenotype in inflorescence  ...  Based on previous studies employing global transcription profiling of Arabidopsis thaliana inflorescence stem development and A. thaliana root cell type-specific expression, ten candidate transcription  ...  Primers flanking the insertion sites were used in conjunction with a primer from left border of T-DNA to identify lines homozygous for the T-DNA insertion in each line.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14288/1.0067111">doi:10.14288/1.0067111</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/quya4uip4vbstdkfthx6qbtfum">fatcat:quya4uip4vbstdkfthx6qbtfum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200217210349/https://open.library.ubc.ca/media/download/pdf/24/1.0067111/2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/34/f7/34f707f3a80f1c44511662f5512fa75ca9ad9ca2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14288/1.0067111"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>