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FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes

A. Chong
2003 Nucleic Acids Research  
FIE2 (5 0 end Information Extraction v2) is a webbased program for easy identification and extraction of nucleotide sequence around the start of genes (promoter region) and their translation initiation  ...  FIE2 then uses currently available human genome sequence information to extract the desired sequences.  ...  FIE2 is a specialized program for the extraction of genomic DNA sequences around the start (promoter region) and translation initiation site (TIS) of a gene.  ... 
doi:10.1093/nar/gkg604 pmid:12824363 pmcid:PMC169010 fatcat:xm6jihdx55airdg3mkay6rfluq

Duplicated fie Genes in Maize: Expression Pattern and Imprinting Suggest Distinct Functions

O. N. Danilevskaya
2003 The Plant Cell  
Genomic sequences of fie1 and fie2 show significant homology within coding regions but none within introns or 5 upstream.  ...  Two maize genes with predicted translational similarity to the Arabidopsis FIE (Fertilization-Independent Endosperm) protein, a repressor of endosperm development in the absence of fertilization, were  ...  Springer and Isaac Boer for critically reading the manuscript.  ... 
doi:10.1105/tpc.006759 pmid:12566582 pmcid:PMC141211 fatcat:ywfgsrp67bhfvmb4wt3hsddutu

Maize haplotype with a helitron-amplified cytidine deaminase gene copy

Jian-Hong Xu, Joachim Messing
2006 BMC Genetics  
However, understanding the role of this type of gene amplification has been hampered by the lack of finding intact gene sequences within Helitrons.  ...  Genetic maps are based on recombination of orthologous gene sequences between different strains of the same species.  ...  Acknowledgements This work has been supported by grants of the Department of Energy (DOE) #DE-FG05-95ER20194 and the National Science Foundation (NSF) DBI 03-20683.  ... 
doi:10.1186/1471-2156-7-52 fatcat:bv5ahpxxzffdjmaefdvqu22lku

A bioinformatics approach to the study of the transcriptional regulation of AMPA Glutamate receptors (GRIAs) and genes whose expression are co-regulated with GRIAs

Allen Chong, Vladimir Bajic Ii K E Y W O R D S
2009 unpublished
The starting hypothesis for this project had been: "Each family of genes has a distinct set of transcriptional elements that is unique onto this family".  ...  The answer seemed to lie in making an assessment of the promoters of this family of genes against a background of a comprehensive set of promoter sequences and in the process, to try to find the transcriptional  ...  FIE2 is a specialized program for the extraction of genomic DNA sequences around the start (promoter region) and translation initiation site (TIS) of a gene.  ... 

Molecular characterization and identification of genes involved in maize female gametophyte development

Kanok-orn Srilunchang
The knock-down of the diSUMO-like ZmDSUL gene (Chapter 5) causes the embryo sac to arrest at the eight-nucleate stage (FG5) and the immature embryo sa [...]  ...  In one study, I could show that knock-down of the MATH-BTB domain containing ZmMAB1 gene (Chapter 4) is required for the first nuclear divisions since embryo sac are arrested at the two-nucleate stage  ...  This work was supported by grants from the Alexander von Humboldt-Foundation, and by the Croatian Ministry of Science, Education and Sport to DLL (Project No. 119-1191196-1225).  ... 
doi:10.5283/epub.12355 fatcat:zibuqfz2z5g4zk6qhn6laped4q

Genomic imprinting in Arabidopsis thaliana – how is it regulated and where does it occur?

Michael T Raissig
Our work on the epigenetic regulation of plant reproduction is supported by the University of Zü rich, a fellowship of the Roche Research Foundation (to MTR), the EPIGENOME Network of Excellence and the  ...  Our work on imprinting mechanisms is supported by the University of Zü rich and grants from the Swiss National Science Foundation (to U.G.) and a fellowship from the Roche Research Foundation (to M.T.R  ...  (A) The MEA locus contains two helitron transposons, AtREP2 and AtREP1, 59 of the translational start site and a tandem repeat region, termed MEA-ISR, 39of the gene.  ... 
doi:10.5167/uzh-90835 fatcat:5peq5sf3u5a7jhizdqwjeymxwi


D. Paolo
Interestingly, in wild-type material we found considerable enrichment of DNA sequences corresponding to the region around the translational start site within which STK binding sites are located.  ...  We cloned the entire STK genomic region (a DNA fragment comprising 3.5 kb of sequence upstream of the ATG codon plus all the coding region) as a translational fusion to a GFP reporter gene, and the final  ... 
doi:10.13130/d-paolo_phd2014-11-27 fatcat:xz2li7nzpjbrlh27swtjseyz54