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Structural alterations in the macaque frontoparietal white matter network after recovery from prefrontal cortex lesions [article]

Ramina Adam, David J Schaeffer, Kevin Johnston, Ravi S. Menon, Stefan Everling
<span title="2020-05-03">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Diffusion-weighted MRI was acquired in four macaque monkeys before the lesions and at 2-4 months post-lesion, after recovery of deficits in saccade selection of contralesional targets.  ...  After behavioural recovery, tract-specific fractional anisotropy in contralesional SLF and transcallosal PPC increased after small lesions and decreased after larger lesions compared to pre-lesion.  ...  Free-choice 157 trials were used to measure the degree of visual extinction, since contralesional extinction 158 deficits only appear in the presence of a competing ipsilesional stimulus.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.05.02.064840">doi:10.1101/2020.05.02.064840</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rrrm7eiacrgpher3k5w3frmal4">fatcat:rrrm7eiacrgpher3k5w3frmal4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200711163050/https://www.biorxiv.org/content/biorxiv/early/2020/05/03/2020.05.02.064840.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bf/a9/bfa96eecd0dfa2b25fcbea913ee716c5f3b9147e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.05.02.064840"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Modelling phage-bacteria interactions driving predation and horizontal gene transfer [article]

Jorge Moura de Sousa, Ahlam Alsaadi, Jakob Haaber, Hanne Ingmer, Eduardo P. C. Rocha
<span title="2018-03-30">2018</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
between bacteria and phage, and better predicts dynamics of lysogen invasion in the gastrointestinal tract, compared to models assuming well-mixed environments.  ...  It can also be expanded to put forward novel hypotheses, facilitating the design of phage therapy treatments and the assessment of the role of phages in the spread of antibiotic resistance.  ...  , in File S7 are the 419 parameters explored with the RFA).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/291328">doi:10.1101/291328</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gtm4vrl555hztd7l45rwpq4f3e">fatcat:gtm4vrl555hztd7l45rwpq4f3e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190501225218/https://www.biorxiv.org/content/biorxiv/early/2018/04/16/291328.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/38/bc/38bcbcc844f1f78877ae776e2a104dd10987177e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/291328"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Limits to adaptation in partially selfing species [article]

Matthew Hartfield, Sylvain Glemin
<span title="2015-09-06">2015</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Here, we calculate the fixation probability of beneficial alleles if there is an existing selective sweep in the population.  ...  In outcrossing populations, "Haldane's Sieve" states that recessive beneficial alleles are less likely to fix than dominant ones, because they are less expose to selection when rare.  ...  see details in Supplementary File S1).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/026146">doi:10.1101/026146</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/a7wklujtb5hahmczfin4hbmyuu">fatcat:a7wklujtb5hahmczfin4hbmyuu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190504070944/https://www.biorxiv.org/content/biorxiv/early/2016/04/13/026146.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/36/83/368344b72c1d1c7279ae284881a34bef5932626e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/026146"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Genomic analyses of the extinct Sardinian dhole (Cynotherium sardous) reaveal its evolutionary history [article]

Marta Maria Ciucani, Mikkel-Holger S Sinding, Julie Kragmose Jensen, Oliver Smith, Saverio Bartolini Lucentini, Erika Rosengren, Lorenzo Rook, Caterinella Tuveri, Marisa Arca, Enrico Cappellini, Marco Galaverni, Ettore Randi (+6 others)
<span title="2021-02-27">2021</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Our sample showed low genome-wide diversity compared to other extant canids - probably a result of the long term isolation - that could have contributed to the subsequent extinction of the Sardinian dhole  ...  We sequenced the genome of a ca 21,100 year old Sardinian dhole in order to understand its genomic history and clarify its phylogenetic position.  ...  Acknowledgments This research was funded by the ERC Consolidator Grant 681396 'Extinction Genomics'.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.02.26.432714">doi:10.1101/2021.02.26.432714</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ttxfvjw4gzhhbpgppfbbo2v4wu">fatcat:ttxfvjw4gzhhbpgppfbbo2v4wu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210716175648/https://www.biorxiv.org/content/biorxiv/early/2021/02/27/2021.02.26.432714.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/09/c6/09c6e0dc57f91c09e20f99809346f95ce54901e0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.02.26.432714"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

PREDICTING EVOLUTIONARY TRANSITIONS IN TOOTH COMPLEXITY WITH A MORPHOGENETIC MODEL [article]

Aidan Couzens, Karen E Sears, Martin Rücklin
<span title="2019-11-07">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Transitions from simple to complex teeth required an early shift from mesiodistal to lateral cusp patterning which is congruent with patterns of dental complexification in early mammals.  ...  We infer that the contributions of primary enamel knot cells to secondary enamel knots which are responsible for patterning lateral cusps may have been an important developmental innovation in tribosphenic  ...  For each model time point, the *.off grid file containing the cell surface 287 geometry was converted to *.ply surface file in R (58) using the vcgPlyWrite function in 288 the package rvcg (59).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/833749">doi:10.1101/833749</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/s27nwfpvrregzn2hpa2rlgfsnu">fatcat:s27nwfpvrregzn2hpa2rlgfsnu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200311061245/https://www.biorxiv.org/content/biorxiv/early/2019/11/07/833749.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/39/f839c2e65cc57000c570d2bdb01e224f0069375a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/833749"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

A SUPERNOVA AT 50 PC: EFFECTS ON THE EARTH'S ATMOSPHERE AND BIOTA [article]

Adrian Melott, Brian Thomas, Michael Kachelriess, Dimitry Semikoz, Andrew Overholt
<span title="2017-02-15">2017</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The upper bound in this case is with a largely coherent field aligned along the line of sight to the supernova, in which case TeV-PeV cosmic ray flux increases are ~10000; in the case of a transverse field  ...  Recent 60Fe results have suggested that the estimated distances of supernovae in the last few million years should be reduced from ~100 pc to ~50 pc.  ...  diffusion, α = 5/3.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/108936">doi:10.1101/108936</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mmmhekhzifhnlnvdp6o6bxxyee">fatcat:mmmhekhzifhnlnvdp6o6bxxyee</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502073203/https://www.biorxiv.org/content/biorxiv/early/2017/04/17/108936.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a3/b1/a3b151fc3f27d0d4700fe68f440dc0fdf52ab4a4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/108936"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Limits to Adaptation in Partially Selfing Species

Matthew Hartfield, Sylvain Glémin
<span title="2016-04-20">2016</span> <i title="Genetics Society of America"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/j4jbzoikwjh4nhplkbx7xsr32y" style="color: black;">Genetics</a> </i> &nbsp;
Here, we calculate the fixation probability of beneficial alleles if there is an 10 existing selective sweep in the population.  ...  In outcrossing populations, "Haldane's Sieve" states that recessive bene-2 ficial alleles are less likely to fix than dominant ones, because they are less expose to selection when rare.  ...  We can then In Supplementary File S1 and Mathematica File S2, we show that Φ equilibrates 13 . CC-BY-NC 4.0 International license not peer-reviewed) is the author/funder.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1534/genetics.116.188821">doi:10.1534/genetics.116.188821</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27098913">pmid:27098913</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4896205/">pmcid:PMC4896205</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4uh2vq2xsvcsdcyin77vbhdy2m">fatcat:4uh2vq2xsvcsdcyin77vbhdy2m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190304005235/http://pdfs.semanticscholar.org/d25c/1ab7e044ee495b9ce3ee5207832dffd2df60.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d2/5c/d25c1ab7e044ee495b9ce3ee5207832dffd2df60.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1534/genetics.116.188821"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896205" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

FluoSim: simulator of single molecule dynamics for fluorescence live-cell and super-resolution imaging of membrane proteins [article]

Matthieu Lagardere, Ingrid Chamma, Emmanuel Bouilhol, Macha Nikolski, Olivier Thoumine
<span title="2020-02-06">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
in real time the distribution of thousands of independent molecules in 2D cellular geometries, providing simulated data of protein dynamics and localization directly comparable to actual experiments.  ...  The software, thoroughly validated against experimental data on the canonical neurexin-neuroligin adhesion complex, integrates diffusion coefficients, binding rates, and fluorophore photo-physics to calculate  ...  (d) Cartoon of Nrx1β diffusional trapping by Nlg1 in a cell-cell contact. Fitting SPT experiments.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.02.06.937045">doi:10.1101/2020.02.06.937045</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lfxpooc52bgytpeoxg2rxwlc6q">fatcat:lfxpooc52bgytpeoxg2rxwlc6q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200711050408/https://www.biorxiv.org/content/biorxiv/early/2020/02/06/2020.02.06.937045.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ae/1d/ae1db04955d2927f7e99025c3e3a83e55d44fd14.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.02.06.937045"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Metacommunity dynamics and the spurious detection of species associations in co-occurrence analyses: patch disturbance matters [article]

Vincent Calcagno, Nik Cunniffe, Frederic M Hamelin
<span title="2021-06-14">2021</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
All that is required is patch disturbance (i.e. simultaneous extinction of several species in a patch) a common phenomenon in a wide range of real systems.  ...  However, this would require data that very often are not available in practice for these types of analyses.  ...  Rather, it is the outcome of extinction/recolonization dynamics (Eq. 2) that in-419 evitably causes, at steady-state, species to be more frequent in older patches.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.06.14.448327">doi:10.1101/2021.06.14.448327</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/o4xg4sryrbg3xibuuankxwlusm">fatcat:o4xg4sryrbg3xibuuankxwlusm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210717195935/https://www.biorxiv.org/content/biorxiv/early/2021/06/14/2021.06.14.448327.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/48/b4/48b4a096929e819091d11f3791f33430e17eb071.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.06.14.448327"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Establishment and equilibrium levels of deleterious mutations in large populations [article]

Johan W. Viljoen, Pieter de Villiers, Augustus J. van Zyl, Massimo Mezzavilla, Michael S. Pepper
<span title="2018-05-09">2018</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
This reduction in effective population size has a dramatic effect on the probability of establishing mutations, as well as the eventual equilibrium values that are reached in the case of mutations conferring  ...  These approaches are used to quantify the magnitude of a heterozygous selective advantage of a mutation in the presence of a homozygous disadvantage.  ...  Negative or zero values of s always lead to eventual extinction. 126 127 Stochastic Determination of Fixation Probability 128 To investigate the statistical fate of a dominant mutation with selective advantage  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/318428">doi:10.1101/318428</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/rtrieapxqng6plmmnkztmoiram">fatcat:rtrieapxqng6plmmnkztmoiram</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200711143711/https://www.biorxiv.org/content/biorxiv/early/2018/05/09/318428.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d1/bd/d1bd26e67b574a60b408943d77ff85f91350e576.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/318428"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Vertically Arranged Zinc Oxide Nanorods as Antireflection Layer for Crystalline Silicon Solar Cell: A Simulation Study of Photovoltaic Properties

Deb Kumar Shah, Devendra KC, M. Shaheer Akhtar, Chong Yeal Kim, O-Bong Yang
<span title="2020-09-01">2020</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/smrngspzhzce7dy6ofycrfxbim" style="color: black;">Applied Sciences</a> </i> &nbsp;
The 1.1 μm length of the ZnO NRs and a minimum average reflectance of 9.5% appeared to be the optimum values for achieving the highest power conversion efficiency of 14.88%.  ...  The deposited ZnO NRs on the c-Si wafers exhibited the lowest reflectance of ~7.5% at 838 nm, having a reasonable average reflectance of ~9.5% in the whole wavelength range (400–1000 nm).  ...  As represented in Figure 9 , the high diffusion length obtained by ZnO NRs AR is attributed to a higher probability of charge collection, resulting in the large collection of lightgenerated charge carriers  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/app10176062">doi:10.3390/app10176062</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ilm4gueq7bgnjfg7nhcmb4yrve">fatcat:ilm4gueq7bgnjfg7nhcmb4yrve</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200903192828/https://res.mdpi.com/d_attachment/applsci/applsci-10-06062/article_deploy/applsci-10-06062.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7b/a4/7ba426d8734662109fd0f5cb01919d7a6589fdd3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/app10176062"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

A Review on P2P Video Streaming [article]

Sabu M Thampi
<span title="2013-04-04">2013</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The article starts with an introduction to media streaming and its simplified architecture. Various solutions offering video streaming in the context of widespread usage of Internet are discussed.  ...  The main objective of this article is to provide an overview of P2P based Video-on-Demand and live streaming services.  ...  Although the default piece selection mechanism of BitTorrent is very efficient in minimizing the probability for rare pieces to become extinct and in providing peers with rare pieces, it fails despondently  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1304.1235v1">arXiv:1304.1235v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ozpgxm2v6jdvzd3pwjbv6hanmi">fatcat:ozpgxm2v6jdvzd3pwjbv6hanmi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200929082541/https://arxiv.org/ftp/arxiv/papers/1304/1304.1235.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6c/ef/6cefd8c9b80bdaa31e8d09199fbbe90fc9d358a3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1304.1235v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Incorporating uncertainty is essential to macroevolutionary inferences: Grass, grit, and the evolution of kangaroos [article]

Ian G Brennan
<span title="2019-09-18">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Studying organismal ecology and evolution on deep timescales provides us opportunities to identify the processes driving patterns in diversity and forms.  ...  Macroecological and macroevolutionary studies of trait evolution however, often fail to account for sources of artifactual variation in the data---be it phylogenetic, temporal, or other.  ...  Sampling additional extinct taxa results in a modest decrease in support for the C 4 model.  ... 
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Mind the Outgroup: Influence of Taxon Sampling on Total-Evidence Dating of Pimpliform Parasitoid Wasps (Hymenoptera, Ichneumonidae) [article]

Tamara Spasojevic, Gavin R Broad, Ilari Saaksjarvi, Martin Schwarz, Masato Ito, Stanislav Korenko, Seraina Klopfstein
<span title="2019-11-04">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
In addition, we discover an artefact that might be detrimental for total-evidence dating: "bare-branch attraction", namely high attachment probabilities of, especially, older fossils to terminal branches  ...  Our case study demonstrates that in order to obtain robust age estimates, total-evidence dating studies need to be based on a thorough and balanced sampling of both extant and fossil taxa, with the aim  ...  The sequences were edited and aligned in 225 generations with a sampling frequency of 1000. The heating coefficient was set to 0.05 in 226 order to increase chain swap probabilities.  ... 
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The genetic basis of adaptation through the evolution of mating systems [article]

Kuangyi Xu
<span title="2021-02-12">2021</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
probability found in partially selfing populations, but fixation is fastest for alleles with intermediate dominance.  ...  the probability is nearly independent of the dominance, and always decreases with the selfing rate.  ...  The fixation 430 probability can be calculated by replacing with in equations (5) was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in  ... 
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