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MAPI: towards the integrated exploitation of bioinformatics Web Services

Sergio Ramirez, Johan Karlsson, Oswaldo Trelles
2011 BMC Bioinformatics  
Results: To facilitate the construction of software clients and make integrated use of this variety of tools, we present a modular programmatic application interface (MAPI) that provides the necessary  ...  This document describes the main functionality of the framework and how it can be used to facilitate the deployment of new software under a unified structure of bioinformatics Web Services.  ...  We would also like to thank our colleagues for their contributions and comments which have helped to improve MAPI, in particular Javier Rios, Maximiliano Garcia and Victoria Martin Requena.  ... 
doi:10.1186/1471-2105-12-419 pmid:22032807 pmcid:PMC3219744 fatcat:o5ux5w2imjhxpnprfvpuaxxwky

A Repository for Integration of Software Artifacts with Dependency Resolution and Federation Support [chapter]

Rodrigo García-Carmona, Félix Cuadrado, Juan C. Dueñas, Álvaro Navas
2013 Communications in Computer and Information Science  
To help reducing this complexity we propose a model-based repository, capable of automatically resolve the required dependencies.  ...  Different communities employ different standards and tools, and most times is not clear which dependencies a particular piece of software has.  ...  Introduction In recent years software development has been undergoing a huge change, evolving from a closed software paradigm to new processes that incorporate open source software in products and services  ... 
doi:10.1007/978-3-642-36177-7_11 fatcat:et4audebj5agrczsavnwi43kja

Toward Semantic Composition of Web Services with MOVE

J. Dorn, A. Rainer, P. Hrastnik
2006 The 8th IEEE International Conference on E-Commerce Technology and The 3rd IEEE International Conference on Enterprise Computing, E-Commerce, and E-Services (CEC/EEE'06)  
The software reads service descriptions from various sources, matches a request against a service, and composes a complex service from atomic services.  ...  This paper describes a software solution for the WS-Challenge 2006. We introduce the MOVE framework that has been applied to this challenge.  ...  Composer The composer component consists of an interface that provides a generic compose method with provided and resultant data as well as a reference to the discoverer component as parameters.  ... 
doi:10.1109/cec-eee.2006.89 dblp:conf/wecwis/DornRH06 fatcat:yek7gouxnbggte7ixfhd76x76e

Reconciling Components and Services: The Apam Component-Service Platform

Jacky Estublier, German Vega
2012 2012 IEEE Ninth International Conference on Services Computing  
For Component Based Software Engineering (CBSE), an application is a strongly structured and rigid assembly of components.  ...  This paper presents the Component-Service model that combines well controlled structure and dynamism, and its implementation into the Apam component-service platform.  ...  To that end we have extended the OSGi definition of what a service is.  ... 
doi:10.1109/scc.2012.14 dblp:conf/IEEEscc/EstublierV12 fatcat:xdjchq5ajbct7b7e7o3wl6cc7e

Model-Driven Integration and Management of Data Access Objects in Process-Driven SOAs [chapter]

Christine Mayr, Uwe Zdun, Schahram Dustdar
2008 Lecture Notes in Computer Science  
A DAO repository is used to manage DAOs more efficiently and to improve software reuse in database transaction development.  ...  The repository provides functionalities to create, update, retrieve, and delete database transactions.  ...  For example, Alti et. al [18] integrate software architecture concepts into MDA platform by a UML profile for Component-Object based Software Architecture extending UML 2.0.  ... 
doi:10.1007/978-3-540-89897-9_6 fatcat:pi5v64esmjf5zh3m74inhnywsm

An architectural style for spatial data infrastructures

R. Béjar, M. Á. Latre, J. Nogueras‐Iso, P. R. Muro‐Medrano, F. J. Zarazaga‐Soria
2009 International Journal of Geographical Information Science  
This style provides a tool and a shared vocabulary to help system architects to design these infrastructures, and facilitates the exchange of knowledge about them.  ...  This style is defined under the component-andconnector architectural viewtype, extending the client-server and shared-data styles.  ...  capture many components included in these models like applications or data repositories; no other references to software architectural models are provided.  ... 
doi:10.1080/13658810801905282 fatcat:vde5mheynjfedblirn7lp2skce

Method and System for In-Place Modeling of Business Process Extensions as First-Class Entities [chapter]

Heiko Witteborg, Anis Charfi, Wei Wei, Ta'id Holmes
2013 Lecture Notes in Computer Science  
The core objective of an extender is to modify the (process) artifacts provided by a base software vendor -yet, existing approaches do not support this directly but force the developer to explicitly use  ...  The adaptation of business applications and their underlying business processes is key to meeting the specific needs of a certain customer or domain.  ...  The authors would like to thank Mohamed Aly for his contributions to the extensibility concept. The work presented was performed in the context of the Software-Cluster project Emergent.  ... 
doi:10.1007/978-3-642-37804-1_52 fatcat:otzpvzymufebtf5bredgwcomv4

ArchiMate Customization and Architecture Repository Management Practices: for a Technology-Intensive Enterprise

Baobao Ding, Tong Wu, Yingming Yang, Liang Dou, Tiancheng Jin
2019 Journal of Physics, Conference Series  
Due to the increasing number of projects, a unified Enterprise Architecture specification is required.  ...  Technology-intensive companies need to develop a variety of applications based on the needs of the organizations.  ...  Original Layer Extended Layer Explanation Application layer Application service layer This layer shows the services provided by the software system.  ... 
doi:10.1088/1742-6596/1187/4/042049 fatcat:s3yhvioftvg4jeg3qvbz76qae4

DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud

Iraklis Klampanos, Chrysoula Themeli, Alessandro Spinuso, Rosa Filgueira, Malcolm Atkinson, André Gemünd, Vangelis Karkaletsis
2020 Journal of Open Source Software  
Further, it provides Workflowas-a-Service (WaaS) functionality and dynamic loading of execution contexts in order to hide technical complexity from its end users.  ...  This paper introduces the software implementing the DARE platform. More information on the H2020 DARE project is provided in  ...  All core software components are provided via the DARE GitLab group. The DARE Platform repository provides pointers to all relevant repositories, documentation and more.  ... 
doi:10.21105/joss.02664 fatcat:zx3k5fughnellcq5wtfpvgfo5m

Model-based context-aware deployment of distributed systems

J.L. Ruiz, J.C. Duenas, F. Cuadrado
2009 IEEE Communications Magazine  
This paper presents a model for the description of software components, distributed systems and their dependencies, and a mechanism that uses them to automate the deployment of software units onto devices  ...  This paper presents a model for the description of software applications and distributed deployment targets, and a supporting architecture that uses them to automate software deployment onto servers at  ...  a resolution algorithm to select a combination of software components that fit to the physical context and fulfill the logical dependencies.  ... 
doi:10.1109/mcom.2009.5116815 fatcat:5nthn7pd4bcxrca7l6nqrguuuy

The use of mediation and ontology technologies for software component information retrieval

Regina M. M. Braga, Marta Mattoso, Cláudia M. L. Werner
2001 Proceedings of the 2001 symposium on Software reusability putting software reuse in context - SSR '01  
Thus, a possible solution for accessing this information is to use a software layer that integrates different component information sources.  ...  Through mediators, domain ontology acts as a technique/formalism for specifying ontological commitments or agreements between component users and providers, enabling more accurate software component information  ...  and heterogeneity of software components, to organize component repositories within a domain, and to enable software component evolution.  ... 
doi:10.1145/375212.375229 dblp:conf/ssr/BragaMW01 fatcat:bmm2tycws5dj7nbiirmhy6kjge

Planets: Integrated Services for Digital Preservation

Adam Farquhar, Helen Hockx-Yu
2008 International Journal of Digital Curation  
It also provides a scenario demonstrating Planets' usefulness in solving real-life digital preservation problems and an overview of the project's progress to date.  ...  The Planets Project is developing services and technology to address core challenges in digital preservation.  ...  Planets is a substantial collaborative project that builds on and brings together the work of many talented individuals contributing from a consortium of commmited organisations.  ... 
doi:10.2218/ijdc.v2i2.31 fatcat:5a4rq6u3vncd5d57a3us3hfay4

Planets: integrated services for digital preservation

Adam Farquhar, Helen Hockx-Yu
2008 Serials: The Journal for the Serials Community  
It also provides a scenario demonstrating Planets' usefulness in solving real-life digital preservation problems and an overview of the project's progress to date.  ...  The Planets Project 1 is developing services and technology to address core challenges in digital preservation.  ...  Planets is a substantial collaborative project that builds on and brings together the work of many talented individuals contributing from a consortium of commmited organisations.  ... 
doi:10.1629/21140 fatcat:e3o7ctnc7rc2nbpbovfcawb5z4

The use of mediation and ontology technologies for software component information retrieval

Regina M. M. Braga, Marta Mattoso, Cláudia M. L. Werner
2001 Software engineering notes  
Thus, a possible solution for accessing this information is to use a software layer that integrates different component information sources.  ...  Through mediators, domain ontology acts as a technique/formalism for specifying ontological commitments or agreements between component users and providers, enabling more accurate software component information  ...  and heterogeneity of software components, to organize component repositories within a domain, and to enable software component evolution.  ... 
doi:10.1145/379377.375229 fatcat:hppggsdy4zf3jkpakblm747yem

Extending Enterprise Portal Capabilities With a WorkflowMeta-Component Framework [chapter]

Cláudio R. M. Silva, Manuel de Jesus Mendes
2003 IFIP Advances in Information and Communication Technology  
This paper describes a portal prototype implementation that is supported by an open service platform and by a framework that extend the portal capabilities with metadata and workflow management.  ...  A key function to enterprise portals is the ability to participate in a workflow process.  ...  Without the use of dMOF tool, we would have had to implement all the MOF specification or to use a non-standard repository.  ... 
doi:10.1007/978-0-387-35617-4_40 fatcat:t7rgvuk3ljg2jbmtojrw75c2si
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