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ExPASy: SIB bioinformatics resource portal

P. Artimo, M. Jonnalagedda, K. Arnold, D. Baratin, G. Csardi, E. de Castro, S. Duvaud, V. Flegel, A. Fortier, E. Gasteiger, A. Grosdidier, C. Hernandez (+9 others)
<span title="2012-05-31">2012</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
ExPASy (http://www.expasy.org) has worldwide reputation as one of the main bioinformatics resources for proteomics.  ...  Specifically, a single web portal provides a common entry point to a wide range of resources developed and operated by different SIB groups and external institutions.  ...  Thanks also to all ExPASy users who have provided feedback to improve the portal. Conflict of interest statement. None declared.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks400">doi:10.1093/nar/gks400</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22661580">pmid:22661580</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3394269/">pmcid:PMC3394269</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/inyuly6vfje23h6xgsbn73ib5q">fatcat:inyuly6vfje23h6xgsbn73ib5q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502145424/https://dash.harvard.edu/bitstream/handle/1/11729589/3394269.pdf;jsessionid=F2BB7740C66EF4EBE7719388ED61A37E?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e3/9c/e39c737673c6b7c9dc412af9eec6f3eaa54d0402.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gks400"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394269" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Glycomics@ExPASy: Bridging the gap

Julien Mariethoz, Davide alocci, Alessandra Gastaldello, Oliver horlacher, Elisabeth Gasteiger, Miguel Rojas-Macias, Niclas G. Karlsson, Nicolle Packer, Frederique LISACEK
<span title="2018-08-10">2018</span> <i title="American Society for Biochemistry &amp; Molecular Biology (ASBMB)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/63atlvwyorhorfip35rcvk6bey" style="color: black;">Molecular &amp; Cellular Proteomics</a> </i> &nbsp;
Glycomics@ExPASy (https://www.expasy.org/glycomics) is the glycomics tab of ExPASy, the server of SIB Swiss Institute of Bioinformatics.  ...  between glycobiology and protein-oriented bioinformatics resources.  ...  . □ S This article contains supplemental material. ¶ ¶ To whom correspondence should be addressed: SIB Swiss Institute of Bioinformatics, Proteome Informatics Group, Route de Drize 7, 1227 Geneva, Switzerland  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1074/mcp.ra118.000799">doi:10.1074/mcp.ra118.000799</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30097532">pmid:30097532</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6210229/">pmcid:PMC6210229</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/l7ufn7fsfzauneth3afdbcjgbi">fatcat:l7ufn7fsfzauneth3afdbcjgbi</a> </span>
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ExPASy: the proteomics server for in-depth protein knowledge and analysis

E. Gasteiger
<span title="2003-07-01">2003</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The ExPASy (  ...  ACKNOWLEDGEMENTS Finally, we want to thank all the users of ExPASy who, over the years, have sent us feedback that has led to the improvement of existing services and to the development of new ones.  ...  ExPASy AS A PORTAL TO OTHER LIFE SCIENCE RESOURCES The mass of information available to life scientists on the web has completely changed the way in which biological data is accessed and processed.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkg563">doi:10.1093/nar/gkg563</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/12824418">pmid:12824418</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC168970/">pmcid:PMC168970</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mmswhmjr3vespn43t2phzjz2zi">fatcat:mmswhmjr3vespn43t2phzjz2zi</a> </span>
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The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

<span title="2015-11-28">2015</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
In particular, SIB's Bioinformatics resource portal ExPASy features over 150 resources, including UniProtKB/Swiss-Prot, EN-ZYME, PROSITE, neXtProt, STRING, UniCarbKB, SugarBindDB, SwissRegulon, EPD, arrayMap  ...  The SIB Swiss Institute of Bioinformatics (www. isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia  ...  Acknowledgements to Additional SIB Members (non-coauthors) The authors would like to explicitly thank the following SIB members not mentioned in the co-author list above:  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkv1310">doi:10.1093/nar/gkv1310</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26615188">pmid:26615188</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4702916/">pmcid:PMC4702916</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/oxgje3pvj5hv5mqgjcvm4w2xiy">fatcat:oxgje3pvj5hv5mqgjcvm4w2xiy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190428025647/https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/114269/gkv1310.pdf;jsessionid=63FFF7CED63EA4F971F70934B4A23D25?sequence=2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/91/53/9153dab3f27eef8b6a06504dde724eb47d530201.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkv1310"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702916" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches [article]

Etienne Z. Gnimpieba, Douglas Jennewein, Luke Fuhrman, Carol M. Lushbough
<span title="2013-10-31">2013</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Many tools have been developed to help the bioinformatics community with that transmission challenge.  ...  The merger of computer science, mathematics, and life sciences has brought about the discipline known as bioinformatics.  ...  Yes NA No NA Yes Yes NA NA ExPASy SIB SIB ExPASy is the SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools (i.e., resources) in different  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1310.8383v1">arXiv:1310.8383v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/swxgzxnavzanph7uiahzreqfx4">fatcat:swxgzxnavzanph7uiahzreqfx4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191027120513/https://arxiv.org/pdf/1310.8383v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e5/38/e538fa97f1d7bc43faee13acd5ecc5d39fd6af7f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1310.8383v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Using Molecular Visualization as a Tool for Culturally Competent and Culturally Relevant Teaching: A Guided-Inquiry Biochemistry Activity

Pumtiwitt McCarthy, Richard Williams, Cleo Hughes-Darden, Roni Ellington, Paminas Mayaka, Monica Jackson, Asamoah Nkwanta
<span title="">2020</span> <i title="The Shodor Education Foundation, Inc."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/57kwi6ifbzhfhn3aubbvq4quee" style="color: black;">The Journal of Computational Science Education</a> </i> &nbsp;
Participants used free tools including NCBI, RCSB PDB, LALIGN and Swiss PDB DeepView protein visualization software from EXPASY.  ...  do -Repository of protein structural data LALIGN ExPASy SIB Bioinformatics Resource Portal http://embnet.vital - it.ch/software/LA LIGN_form.  ...  ExPASy SIB Bioinformatics Resource Portal https://web.expasy .org/translate/ -Translates nucleotide sequence to protein sequence Google Docs Google http:/docs.google.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.22369/issn.2153-4136/11/2/1">doi:10.22369/issn.2153-4136/11/2/1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/itzd45c47nhkvmpriq5mqnsurq">fatcat:itzd45c47nhkvmpriq5mqnsurq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200507152436/https://shodor.org/media/content//jocse/volume11/issue2/1_mccarthy.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/e2/3d/e23d7866ebc7350a95999252a164e809ceed44fd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.22369/issn.2153-4136/11/2/1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek (+12 others)
<span title="2014-05-03">2014</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
It is renowned worldwide for its databases and software tools, such as UniProtKB/Swiss-Prot, PROSITE, SWISS-MODEL, STRING, etc, that are all accessible on ExPASy.org, SIB's Bioinformatics Resource Portal  ...  The SIB Swiss Institute of Bioinformatics (www.isbsib.ch) was created in 1998 as an institution to foster excellence in bioinformatics.  ...  For a detailed list of SIB resources, refer to ExPASy.org, SIB's Bioinformatics Resource Portal.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gku380">doi:10.1093/nar/gku380</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24792157">pmid:24792157</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4086091/">pmcid:PMC4086091</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ps6txa3xijhpxbpl2radc6dvdi">fatcat:ps6txa3xijhpxbpl2radc6dvdi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190427013319/https://serval.unil.ch/resource/serval:BIB_28A5775B7C38.P001/REF.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/31/22/31222dfd6831ec35fad669ad96c0530175d59d39.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gku380"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086091" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Correction to: Structural analysis and proteomics studies on the Myoviridae vibriophage M4

Sayani Das, Moumita Dutta, Anindito Sen, Amar N. Ghosh
<span title="2019-06-21">2019</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3us7silkl5aynn3myxfxna5bly" style="color: black;">Archives of Virology</a> </i> &nbsp;
Artimo P, Arnold K, Baratin D et al (2012) ExPASy: SIB bioinformatics resource portal.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00705-019-04315-9">doi:10.1007/s00705-019-04315-9</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kza6ghjaybgpbogamtxipq46hy">fatcat:kza6ghjaybgpbogamtxipq46hy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200305073330/https://link.springer.com/content/pdf/10.1007%2Fs00705-019-04315-9.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/57/33/5733651d4a3231677494fd63a939e62c7b505d4a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00705-019-04315-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Applied Bioinformatics Tools [chapter]

Jingchu Luo
<span title="">2013</span> <i title="Springer Berlin Heidelberg"> Basics of Bioinformatics </i> &nbsp;
List of Bioinformatics Tools at International Bioinformatics Centers • ExPASy tools -a comprehensive list of online web-based bioinformatics tools provided by ExPASy and worldwide • EBI tools -the entry  ...  The three major international bioinformatics centers, NCBI, EBI, and ExPASy, develop, collect, and maintain hundreds of bioinformatics tools.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-38951-1_9">doi:10.1007/978-3-642-38951-1_9</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ycrao5zo7baavjv3pxzzvljuye">fatcat:ycrao5zo7baavjv3pxzzvljuye</a> </span>
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Bioinformatics for Renal and Urinary Proteomics: Call for Aggrandization

Paul, Antonydhason, Gopal, Haga, Hasan, Oh
<span title="2020-01-31">2020</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3loumxx7kzamnlu4h6x3xoz6ay" style="color: black;">International Journal of Molecular Sciences</a> </i> &nbsp;
This makes urine a valuable resource for the diagnoses of diseases.  ...  This is the first review that consolidates the bioinformatics applications specifically for renal and urinary proteomics.  ...  The elaborate functions of each of these are dealt with elsewhere (ExPASy SIB Bioinformatics Resource Portal -Proteomics Tools.html).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms21030961">doi:10.3390/ijms21030961</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32024005">pmid:32024005</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7038205/">pmcid:PMC7038205</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/i3cywnyhvbbklap75ojrfnqhry">fatcat:i3cywnyhvbbklap75ojrfnqhry</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208043831/https://res.mdpi.com/d_attachment/ijms/ijms-21-00961/article_deploy/ijms-21-00961-v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3f/dd/3fdde0abe88d2eece1895259e6c0101c3527a1e0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms21030961"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7038205" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!

A. Bairoch
<span title="2000-01-01">2000</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
Therefore we propose the creation of a Swiss Institute of Bioinformatics (SIB).  ...  Keith Robinson, then finishing his PhD in George Church's lab at Harvard, created the first 'portal' for life sciences, the WWW Virtual Libraries: Biosciences was linked to all emerging resources for the  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/16.1.48">doi:10.1093/bioinformatics/16.1.48</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/10812477">pmid:10812477</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ifskveciunhybo2vevcsjtyo6e">fatcat:ifskveciunhybo2vevcsjtyo6e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20040823211005/http://bioinformatics.oupjournals.org:80/cgi/reprint/16/1/48.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ec/e6/ece622263eae780383a570c4aeb1a22667ba52c5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/16.1.48"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

The Cellosaurus, a Cell-Line Knowledge Resource

Amos Bairoch
<span title="">2018</span> <i title="Association of Biomolecular Resource Facilities"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zlb4hq4hkfgptl2zq3dbo5nqpa" style="color: black;">Journal of Biomolecular Techniques</a> </i> &nbsp;
The Cellosaurus is available on the ExPASy server (https://web.expasy.org/cellosaurus/) and can be downloaded in a variety of formats.  ...  The Cellosaurus is a knowledge resource on cell lines. It aims to describe all cell lines used in biomedical research. Its scope encompasses both vertebrates and invertebrates.  ...  for developing the Scala utility celloparser that performs error checking on the Cellosaurus and converts the flat-file format into OBO and XML, Elisabeth Gasteiger for implementing the Cellosaurus on ExPASy  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7171/jbt.18-2902-002">doi:10.7171/jbt.18-2902-002</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29805321">pmid:29805321</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5945021/">pmcid:PMC5945021</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jixveahmp5ayvnwbodf4klf67m">fatcat:jixveahmp5ayvnwbodf4klf67m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429201432/https://archive-ouverte.unige.ch/files/downloads/0/0/1/0/8/5/3/1/unige_108531_attachment01.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/34/2e/342e128446610a2283f2221d0ba34df567a5df33.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7171/jbt.18-2902-002"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945021" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

PENDUGAAN PEPTIDA BIOAKTIF DARI SUSU TERHIDROLISIS OLEH PROTEASE TUBUH DENGAN TEKNIK IN SILICO

Azis Boing Sitanggang, Sudarsono Sudarsono, Dahrul Syah
<span title="">2018</span> <i title="Department of Food Science, Bogor Agricultural Food Science"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lpgsy2l3gbcofbzjpoxvn3xdda" style="color: black;">Jurnal Teknologi dan Industri Pangan</a> </i> &nbsp;
Expert Protein Analysis System (ExPASy).  ...  All simulations were performed through web-based procedures using PeptideCutter, Expert Protein Analysis System (ExPASy).  ...  Situs UniProt dibuat dan diolah oleh Swiss Institute of Bioinformatics (SIB).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6066/jtip.2018.29.1.93">doi:10.6066/jtip.2018.29.1.93</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6bnurhjawrcmzdozckt3inso4y">fatcat:6bnurhjawrcmzdozckt3inso4y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190427205200/http://journal.ipb.ac.id/index.php/jtip/article/download/20768/PDF" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6066/jtip.2018.29.1.93"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics

Xing Li, Zhijue Xu, Xiaokun Hong, Yan Zhang, Xia Zou
<span title="2020-09-14">2020</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3loumxx7kzamnlu4h6x3xoz6ay" style="color: black;">International Journal of Molecular Sciences</a> </i> &nbsp;
In this study, the representative databases of glycan structure, glycoprotein, glycan–protein interactions, glycogenes, and the newly developed bioinformatic tools and integrated portal for glycoproteomics  ...  Glycomics@ExPASy Glycomics@ExPASy (https://www.expasy.org/glycomics) is the glycomics tab of ExPASy, centralizing glycoinformatic resources developed by glycoscientists.  ...  ) to bridge the glycobiology and protein-oriented bioinformatics resources GlyConnect [86] The central platform of the Either browsed or searched by protein https://glyconnect.expasy.org/ Glycomics@ExPASy  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms21186727">doi:10.3390/ijms21186727</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32937895">pmid:32937895</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cqhmegyfebdtfbeqgu2yrdzv7y">fatcat:cqhmegyfebdtfbeqgu2yrdzv7y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201013145837/https://res.mdpi.com/d_attachment/ijms/ijms-21-06727/article_deploy/ijms-21-06727.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/83/01/8301fb1503f0426d3ba0920437cfd084c05afdac.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/ijms21186727"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

ISOLATION AND DETERMINATION OF CHROMIUM (VI) AND NICKEL (II) RESISTANT SIDEROPHORE PRODUCING BACILLUS CEREUS(sp) AND ANALYSIS OF THE PROTEIN EXPRESSION USING BIOINFORMATICS TOOLS

Subhayan Dutta, Rohini Basak, Swati Chakraborty
<span title="2022-01-31">2022</span> <i title="Slovak University of Agriculture in Nitra"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3y4qssv2wvgz5dycq36eh2tapy" style="color: black;">Journal of Microbiology, Biotechnology and Food Sciences</a> </i> &nbsp;
National Center For Biotechnology Information (NCBI), Basic Local Alignment Search Tool (BLAST), Clustal Omega, Expert Protein Analysis System (ExPASy), Self-Optimized Prediction Method with Alignment  ...  Using various bioinformatics softwares the siderophore produced by Bacillus cereus (Rock 3-28) was compared with the isolated culture because both of their molecular weight varied from the range of 48kDa  ...  (SIB) and in particular the SIB Web Team.It is an extensible and integrative portal for accessing many scientific resources, databases and software tools in different areas of life sciences.The ExPASy  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.55251/jmbfs.3611">doi:10.55251/jmbfs.3611</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/c7nwp7po3bafzkmh3az2dros6u">fatcat:c7nwp7po3bafzkmh3az2dros6u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220430235607/https://office2.jmbfs.org/index.php/JMBFS/article/download/3611/463" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c2/8a/c28a712862db2515418d23204a8476b37351a5fc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.55251/jmbfs.3611"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>
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