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BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs

Frank PY Lin, Stephen Anthony, Thomas M Polasek, Guy Tsafnat, Matthew P Doogue
2011 BMC Bioinformatics  
Evaluation experiments were performed to validate BICEPP's performance on 484 characteristics of 857 drugs, identified from the Australian Medicines Handbook (AMH) and the PharmacoKinetic Interaction Screening  ...  This may be used in pharmacovigilance applications to assist with rapid screening of large drug databases to identify important characteristics for further evaluation.  ...  Acknowledgements The authors thank Xuan-Hieu Phan, Professor Enrico Coiera, and Wendy Yang for comments on earlier versions of this work. Authors' contributions FL and SA conceived the project.  ... 
doi:10.1186/1471-2105-12-112 pmid:21510898 pmcid:PMC3110144 fatcat:3rog7ui5mjagxmayhwcm5jjvsy

GIS BASED SYSTEM ANALYSIS FOR URBAN WATER CHARACTERISTICS

Dursun Zafer Seker, Akira Yuasa, Arzu Sakiz, M. Sedat Kabdasli
2003 Journal of Water and Environment Technology  
In this study, GIS-based system analysis has been performed for the aim of monitoring and managing the sewerage lines.  ...  Old and newly planned wastewater lines of the study area and, stream channel, maps and basins were also added to the system.  ...  After the GIS database is set up, the system has queried and analyzed by using attribute tables.  ... 
doi:10.2965/jwet.2003.239 fatcat:5a6zfrhm45dnvneapfpft7ne7y

Comparing Boolean and probabilistic information retrieval systems across queries and disciplines

Robert M. Losee
1997 Journal of the American Society for Information Science  
, given values for query and database characteristics.  ...  The performance of information retrieval systems may be determined either by using experimental simulation, or through the application of analytic techniques that directly estimate the retrieval performance  ...  Analytic Models of Retrieval Performance Probabilistic and vector models of retrieval have traditionally been evaluated by simulating retrieval systems using test databases containing sample queries, documents  ... 
doi:10.1002/(sici)1097-4571(199702)48:2<143::aid-asi5>3.0.co;2-y fatcat:l6vk37ddvnbyppua4fkqfyhrhi

New Method for 3D Shape Retrieval

Abdelghni Lakehal, Omar El Beqqali
2011 International Journal of Computer Science & Information Technology (IJCSIT)  
The performance of this new approach is evaluated at set of 3D object of well known database, is NTU (National Taiwan University) database.  ...  In this paper, we introduce a new method for 3D objects recognition and retrieval by using a set of binary images CLI (Characteristic level images).  ...  Results and performance In order to evaluate the performance of the shape similarity measure, we design experiments performing 3D model retrieval on the test database.  ... 
doi:10.5121/ijcsit.2011.3508 fatcat:3osebpsbvjcpragpefdvfvbrza

Exploratory search methodology for sentinel 2 data: a prospect of both visual and latent characteristics

C. Vaduva, F.A. Georgescu, A. Griparis, I. Neagoe, A.C. Grivei, M. Datcu
2019 IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium  
For optimized results, the authors focus on a detailed assessment of top relevant state-of-the-art algorithms for features extraction and classification to determine which one could handle best the characteristics  ...  Computer-based data analysis is highly required to extract similarity by processing and assist human understanding and semantic annotation in support of Earth surface mapping.  ...  In addition, a manual annotation was performed to support the algorithms validation and evaluation.  ... 
doi:10.1109/igarss.2019.8900349 dblp:conf/igarss/VaduvaGGNGD19 fatcat:e3g25csionchzpg3cbxekhrqrm

How Part-of-Speech Tags Affect Text Retrieval and Filtering Performance [article]

Robert M. Losee
1996 arXiv   pre-print
Natural language processing (NLP) applied to information retrieval (IR) and filtering problems may assign part-of-speech tags to terms and, more generally, modify queries and documents.  ...  In addition to a prediction of performance with tags, upper and lower bounds for retrieval performance are derived, giving the best and worst effects of including part-of-speech tags.  ...  An Analytic Model of Text Retrieval Retrieval and ltering systems may be evaluated using any of a number of measures, described in standard retrieval texts (Salton & McGill, 1983; Van Rijsbergen, 1979  ... 
arXiv:cmp-lg/9602001v1 fatcat:pdw2uml4ovdeplitiujhluzquu

A Survey on Modality Characteristics, Performance Evaluation Metrics, and Security for Traditional and Wearable Biometric Systems [article]

Aditya Sundararajan, Arif I. Sarwat, Alexander Pons
2019 arXiv   pre-print
To bridge the gap, this paper accordingly reviews and compares the key characteristics of modalities, contrasts the metrics used to evaluate system performance, and highlights the divergence in critical  ...  While the current literature is cognizant of those differences, there is no effective work that summarizes the factors where TBS and WBS differ, namely, their modality characteristics, performance, security  ...  , which establishes a strong coupling between security concerns and performance (6) Modality characteristics determine the impact of M attacks while performance metrics determine that of T attacks.  ... 
arXiv:1903.02548v1 fatcat:mkl32giawnb5lgornzq4w3ec74

Validating a Model Predicting Retrieval Ordering Performance with Statistically Dependent Binary Features

Robert M. Losee
2015 International Journal of Information Retrieval Research  
These predictive methods may be used in a range of retrieval and media applications that examine the similarity between statements of needs such as "queries," and documents, media, genes, and realia.  ...  Information retrieval performance may be measured retrospectively, after experiments have been conducted or other data has been gathered, or performance may be predicted for systems before retrieval, given  ...  performance given query, relevance values, and databases.  ... 
doi:10.4018/ijirr.2015010101 fatcat:wmzf465nh5cxnp6vhiuwcmdpni

Some perspectives on the evaluation of information retrieval systems

Jean M. Tague‐Sutcliffe
1996 Journal of the American Society for Information Science  
These parameters might describe characteristics of the database relating to size and distribution of terms and parameters of the query such as the number of query terms and probabilistic retrieval weights  ...  The essence of analytic or simulation approaches is to show how performance levels are determined by the parameters of the system.  ... 
doi:10.1002/(sici)1097-4571(199601)47:1<1::aid-asi1>3.3.co;2-h fatcat:2dcnq65jv5fcrj5xbr6tx5xufu

Some perspectives on the evaluation of information retrieval systems

Jean M. Tague-Sutcliffe
1996 Journal of the American Society for Information Science  
These parameters might describe characteristics of the database relating to size and distribution of terms and parameters of the query such as the number of query terms and probabilistic retrieval weights  ...  The essence of analytic or simulation approaches is to show how performance levels are determined by the parameters of the system.  ... 
doi:10.1002/(sici)1097-4571(199601)47:1<1::aid-asi1>3.0.co;2-3 fatcat:valcs225yvgptnnl7p2xz65hni

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology

David J Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A Goodell, Michael Reiss, Fusheng Wang, Tahsin Kurc, Tony Pan, Ashish Sharma, Joel H Saltz
2011 JAMIA Journal of the American Medical Informatics Association  
ImageMiner is a federated system of services that provides a reliable set of analytical and data management capabilities for investigative research applications in pathology.  ...  The 1 design and implementation of ImageMiner, a software platform for performing comparative analysis of expression patterns in imaged microscopy specimens such as tissue microarrays (TMAs), is described  ...  The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations  ... 
doi:10.1136/amiajnl-2011-000170 pmid:21606133 pmcid:PMC3128405 fatcat:v4bxdoqb55fpzc4sm6hqbbigp4

Next-generation geospatial-temporal information technologies for disaster management

C. M. Albrecht, B. Elmegreen, O. Gunawan, H. F. Hamann, L. J. Klein, S. Lu, F. Mariano, C. Siebenschuh, J. Schmude
2020 IBM Journal of Research and Development  
This article discusses the application of new scalable technologies that go far beyond relational databases and file-based storage on spinning disk or tape to incorporate both storage and processing data  ...  We highlight how this new approach can rapidly search multiple GIS data layers to obtain insights in the context of early warning, impact evaluation, response, and recovery to earthquake and wildfire disasters  ...  For this evaluation, a geospatialtemporal database is more performant if it requires consistently less retrieval time across most of the proposed queries.  ... 
doi:10.1147/jrd.2020.2970903 fatcat:tsw7wprrqvazjmw4tllpzqwb7m

Geoportal 2: Nationwide network node of spatial information - description of its characteristics and an attempt at evaluation of selected functionalities

Karol Król, Barbara Prus, Tomasz Salata
2016 Geomatics, Landmanagement and Landscape  
The goal of the paper is to present the Geoportal 2, describe its characteristics, and evaluate selected functionalities available within the mapping service.  ...  At present, there are several hundred official mapping services on the Internet, making available databases of geospatial information of varying character.  ...  The same applies to the evaluation of mapping services developed for mobile devices. They were given 85 points in the PageSpeed Insights test.  ... 
doi:10.15576/gll/2016.1.47 fatcat:ronhfkz6dbhglmahkbgaakdlb4

ISABELA-QA

Sriram Lakshminarasimhan, Scott Klasky, Robert Latham, Robert Ross, Nagiza F. Samatova, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stephane Ethier, Jackie Chen (+1 others)
2011 Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis on - SC '11  
As a proof-of-principle, we propose a parallel query processing engine, called ISABELA-QA that is designed and optimized for knowledge priors driven analytical processing of spatiotemporal, multivariate  ...  data, unlike existing database indexing approaches that require 30%-300% of the original data.  ...  ACKNOWLEDGEMENTS We would like to acknowledge the use of resources at ORNL's and ANL's leadership class computing facilities.  ... 
doi:10.1145/2063384.2063425 dblp:conf/sc/LakshminarasimhanJAGKKECCKLRS11 fatcat:5o4olgexqreszk27ox53aslicm

User-drawn sketch-based 3D object retrievalusing sparse coding

Sang Min Yoon, Gang-Joon Yoon, Tobias Schreck
2014 Multimedia tools and applications  
We perform experiments, the results of which show that the retrieval quality improves over alternative features and codings.  ...  3D object retrieval from user-drawn (sketch) queries is one of the important research issues in the areas of pattern recognition and computer graphics for simulation, visualization, and Computer Aided  ...  Comparison of retrieval performance To systematically evaluate and compare the performance of our proposed methodology we present the first tier precision of the different query benchmark classes.  ... 
doi:10.1007/s11042-013-1831-z fatcat:e6zw6xfc3nan7jpiyshlk24fky
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