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Volume Visualization Using Principal Component Analysis [article]

Salaheddin Alakkari, John Dingliana
2016 Eurographics Workshop on Visual Computing for Biomedicine  
In this paper, we investigate the use of Principal Component Analysis (PCA) for image-based volume visualization.  ...  The approach has potential application in client-server volume visualization or where results of a computationally-complex 3D imaging process need to be interactively visualized on a display device of  ...  c 2016 The Author(s) Eurographics Proceedings c 2016 The Eurographics Association.  ... 
doi:10.2312/vcbm.20161271 dblp:conf/vcbm/AlakkariD16 fatcat:vw4jhdqdvzbmzpnnlqmblw64hq

Computation and Visualization of Asynchronous Behavior of the Heart [article]

Stefan Wesarg, Christina Lacalli
2008 Eurographics Workshop on Visual Computing for Biomedicine  
Beyond its computation we present in this work also methods for its visualization as well as first preliminary results for 4D cardiac magnetic resonance image data.  ...  In this work we propose a novel descriptor for the dynamic behavior of the heart that can easily be computed from 4D data sets.  ...  For the description of the diseased myocardium one distinc The Eurographics Association 2008.  ... 
doi:10.2312/vcbm/vcbm08/029-036 fatcat:fzgyyomxibdizom7gp6mhelpde

Survey of Labeling Techniques in Medical Visualizations [article]

Steffen Oeltze-Jafra, Bernhard Preim
2014 Eurographics Workshop on Visual Computing for Biomedicine  
We give guidelines for choosing a technique dependent on the data representation, e.g., surface rendering or slice view, the type of structures to be labeled, and the individual requirements on an effective  ...  All aim at a clear visual association of labels and structures, visible and legible labels, and a fast and aesthetic labeling while considering individual properties of the data and its representation  ...  We conclude in Section 4 with guidelines for choosing a labeling technique. c The Eurographics Association 2014. Eurographics Workshop on Visual Computing for Biology and Medicine (2014) I. Viola, K.  ... 
doi:10.2312/vcbm.20141192 fatcat:jwijmnyj4jdyza76zidnxy4c7i

Atomistic Visualization of Mesoscopic Whole-Cell Simulations [article]

Martin Falk, Michael Krone, Thomas Ertl
2012 Eurographics Workshop on Visual Computing for Biomedicine  
One model is stored for each protein species and rendered once per instance.  ...  We present two out-of-core optimizations for the interactive visualization of data sets composed of billions of atoms as well as details on the data preparation and the employed rendering techniques.  ...  One possible and popular approach is to use compute clusters for visualization.  ... 
doi:10.2312/vcbm/vcbm12/123-130 fatcat:kakta4frv5e6bafvxy3z73znzy

Information-based Transfer Functions for Multimodal Visualization [article]

Martin Haidacher, Stefan Bruckner, Armin Kanitsar, M. Eduard Gröller
2008 Eurographics Workshop on Visual Computing for Biomedicine  
In this paper we present a general information-based approach for transfer function design in multimodal visualization which is independent of the used modality types.  ...  Transfer functions are an essential part of volume visualization. In multimodal visualization at least two values exist at every sample point.  ...  In future work, a combination of both methods could lead c The Eurographics Association 2008. to even more intuitive user control for multimodal volume visualization.  ... 
doi:10.2312/vcbm/vcbm08/101-108 fatcat:dowdlkhflnabpmicqailbk7nwi

Computation of More Channels in Protein Molecules [article]

Petr Beneš, Petr Medek, Jiri Sochor
2008 Eurographics Workshop on Visual Computing for Biomedicine  
In this paper we propose a new adaptive method for computation of more channels. This new method is piloted on a real data and results are compared with channels identified by chemists as relevant.  ...  Chemists also require that more than one ideal channel be computed in a static protein molecule.  ...  A method proposed in [YFW * 08, YH08] combines both these approaches by computing the Voronoi diagram not for atom centers but for points sampled on the surface of atoms.  ... 
doi:10.2312/vcbm/vcbm08/045-051 fatcat:d44rabn3wvbljmef7lx7uipni4

Visual Analysis of Bipartite Biological Networks [article]

Hans-Jörg Schulz, Mathias John, Andrea Unger, Heidrun Schumann
2008 Eurographics Workshop on Visual Computing for Biomedicine  
A prototype for exploring bipartite graphs, which uses the proposed visualization and interaction techniques, is also presented and used on real data sets from the application domain.  ...  Examples for such networks are biomedical ontologies and biochemical reaction networks, which are bipartite networks – a particular graph class which is rarely addressed in visualization.  ...  Acknowledgements The authors wish to thank Steffen Hadlak for his work on the implementation and the video presentation. This work is supported by the DFG graduate school dIEM oSiRiS.  ... 
doi:10.2312/vcbm/vcbm08/135-142 fatcat:nalhvgpb4nhwve2l3npxeqy2j4

Guided Visualization of Ultrasound Image Sequences [article]

Paolo Angelelli, Ivan Viola, Kim Nylund, Odd Helge Gilja, Helwig Hauser
2010 Eurographics Workshop on Visual Computing for Biomedicine  
In this paper we propose a novel post-processing pipeline for guided visual exploration of ultrasound video sequences, to allow easier and richer exploration and analysis of the data.  ...  c The Eurographics Association 2010.  ...  We also integrate the classic 2D US image visualization, familiar to the examiner, in a c The Eurographics Association 2010.  ... 
doi:10.2312/vcbm/vcbm10/125-132 fatcat:3kytjxi7wne4pctbk63dckha24

Visually Guided Mesh Smoothing for Medical Applications [article]

Tobias Moench, Christoph Kubisch, Kai Lawonn, Ruediger Westermann, Bernhard Preim
2012 Eurographics Workshop on Visual Computing for Biomedicine  
Depending on the number of vertices and the filter algorithm, computation time may vary strongly and interfere with an interactive mesh generation procedure.  ...  Based on a GPU mesh smoothing implementation, model quality is evaluated in real-time and provided to the user as quality graphs to support the mental optimization of input parameters.  ...  For these exemplary filters, computation takes roughly a few seconds for typical anatomical surface models (e.g., <500,000 vertices) on a current CPU using only one core.  ... 
doi:10.2312/vcbm/vcbm12/091-098 fatcat:u242rlr3wnd5bh5xe6sq72vrr4

Simulated Motion Artefact in Computed Tomography [article]

Franck P. Vidal, Pierre-Frédéric Villard
2015 Eurographics Workshop on Visual Computing for Biomedicine  
We propose a simulation framework to simulate the computed tomography acquisition process.  ...  Acknowledgements This work has been partially funded by FP7-PEOPLE-2012-CIG project Fly4PET -Fly Algorithm in PET Reconstruction for Radiotherapy Treatment Planning (http://fly4pet.fpvidal.net).  ...  In Eurographics Workshop on Visual Computing for Biology and Medicine, Sept 2015, The Eurographics Association DOI: 10.2312/vcbm.20151228 @inproceedings {vcbm.20151228, booktitle = {Eurographics Workshop  ... 
doi:10.2312/vcbm.20151228 dblp:conf/vcbm/VidalV15 fatcat:5f52wpmeqzertedqqlhthma2he

Discovering Medical Knowledge Using Visual Analytics [article]

Werner Sturm, Tobias Schreck, Andreas Holzinger, Torsten Ullrich
2015 Eurographics Workshop on Visual Computing for Biomedicine  
This article gives a state-of-the-art overview on visual analytics reseach with a focus on the biomedical domain, systems biology and *omics data.  ...  Visual analytics combines these fields and supports users to integrate domain knowledge into the knowledge discovery process.  ...  Proceedings of the Eurographics Conference on Visualization (Poster paper) 17 (2015), 6. 7 c The Eurographics Association 2015.  ... 
doi:10.2312/vcbm.20151210 dblp:conf/vcbm/SturmSHU15 fatcat:fjkpoap425ezbjj5c3cm7dhuay

Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization [article]

Thomas Waltemate, Björn Sommer, Mario Botsch
2014 Eurographics Workshop on Visual Computing for Biomedicine  
This enables the visualization of whole cells on a mesoscopic level with an interactive magnifier tool for inspecting their molecular structure and dynamic behavior.  ...  Based on instantly computed local parameterizations we map patches of molecular membrane structures onto user-selected regions of cell components.  ...  of the pre-computed membrane. c The Eurographics Association 2014.  ... 
doi:10.2312/vcbm.20141187 fatcat:kneqrmfcjrb5vj3b5btiqgpzaa

A Haptic Rendering Algorithm for Molecular Interaction [article]

Matthew B. Stocks, Stephen D. Laycock
2008 Eurographics Workshop on Visual Computing for Biomedicine  
Haptic Feedback has been applied to the study of molecular systems for several years, however, computation requirements have hampered progress.  ...  Current systems often simulate stiff contacts with a proxy system based on tracking a point over planar surfaces.  ...  One plane is constructed for each intersection circle.  ... 
doi:10.2312/vcbm/vcbm08/037-044 fatcat:ukdpcg5c5bgsdhzhjihcb7xru4

Visualization and Exploration of 3D Toponome Data [article]

Steffen Oeltze, Paul Klemm, Reyk Hillert, Bernhard Preim, Walter Schubert
2012 Eurographics Workshop on Visual Computing for Biomedicine  
We present a volume rendering approach for visualizing all unique protein patterns in 3D.  ...  We further present techniques for interacting with the view in an exploratory analysis. The biologist may for instance "peel of" clusters thereby revealing occluded cell structures.  ...  (b) A CMP with entries equal 1 for CD3 and CD4 is revealed (CD4 is specific to T4 lymphocytes). c The Eurographics Association 2012.  ... 
doi:10.2312/vcbm/vcbm12/115-122 fatcat:lqa3aqfxgja3zgp26nm52izuwm

A Survey on Visualizing Magnetic Resonance Spectroscopy Data [article]

Miguel Nunes, Andrea Laruelo, SoleaKhena Ken, Anne Laprie, Katja Bühler
2014 Eurographics Workshop on Visual Computing for Biomedicine  
This paper is doing a review on how MRSI data is analysed in a medical environment as well as new approaches from the rendering and visual analytics areas.  ...  We conclude that this topic will be under the spotlight in the coming years, as current research is still facing many challenges on which the visualization community can actively contribute to.  ...  Three studies by Feng et al. on visualization of MRSI data c The Eurographics Association 2014. Figure 5 : 5 Figure 5: Left: a 3D glyph visualization of plotted data in PC.  ... 
doi:10.2312/vcbm.20141180 fatcat:w2w6kbv5c5dsvc3oae2rpf7thi
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