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Interpretation ofp-Cyanophenylalanine Fluorescence in Proteins in Terms of Solvent Exposure and Contribution of Side-Chain Quenchers: A Combined Fluorescence, IR and Molecular Dynamics Study

Humeyra Taskent-Sezgin, Juah Chung, Vadim Patsalo, Shigeki J. Miyake-Stoner, Andrew M. Miller, Scott H. Brewer, Ryan A. Mehl, David F. Green, Daniel P. Raleigh, Isaac Carrico
2009 Biochemistry  
The codon for F5 in the NTL9 gene was replaced with the amber stop codon to allow coding for F CN (16) . The vector that is generated is denoted pBAD-NTL9-F5F CN .  ...  The rmsd for the 1-39 core unit relative to the starting structure for the simulation, averaged over the last 45 ns of the MD trajectories, was 0.80 Å for wild-type and 0.79 Å for NTL9-F5F CN .  ... 
doi:10.1021/bi900938z pmid:19658436 fatcat:7hd6u4ytrfdwha6oqf7ckfiumu

Structural studies and molecular dynamics simulations suggest a processive mechanism of exolytic lytic transglycosylase from Campylobacter jejuni

Jagamya Vijayaraghavan, Vijay Kumar, Nikhil P. Krishnan, Ross T. Kaufhold, Ximin Zeng, Jun Lin, Focco van den Akker, Heinrich Sticht
2018 PLoS ONE  
The central pore of the 'doughnut' is elliptical and has an inner diameter ranging from 16 to 37Å.  ...  The flexible linker allows the NU-domain to reach over and complete the circular shape, using residues conserved in the Epsilonproteobacteria LT family.  ...  Overall, the root-mean-square-deviation (RMSD) for main chain atoms over time averaged around 3Å ( MD of PG in substrate-binding mode The two sets of MD simulations of the PG in the substrate-binding  ... 
doi:10.1371/journal.pone.0197136 pmid:29758058 pmcid:PMC5951611 fatcat:a6cul6jnf5cxhdcfjqs4jvqfze

Scanning laser Doppler velocimeter system simulation for sensing aircraft wake vortices

1976 Journal of Aircraft  
Refraction near the ground is due to the wind shear. It may be significant when wind shear is strong. Outputs of this simulation code can serve as a guideline for interpreting the flight data. VI.  ...  AUGUST 1976 Height (m) -64 Horizontal Distance (m) c) Oo fe & Parallel Velocity Vy (m/se Ono mD | oe i !  ... 
doi:10.2514/3.44549 fatcat:ig33rwzrjzh5ze2cqbdzjj7bi4

Fundamentals of Cryptology [chapter]

2006 Security in Fixed and Wireless Networks  
defined over elliptic curves.  ...  We shall first show a picture of an elliptic curve over the reals.  ...  We shall depict the two most typical cases, namely i) and ii), by means of elliptic curves over the reals.  ... 
doi:10.1002/0470863722.ch2 fatcat:3qnksbbsara6vl5fdzynloehcy

Design of Static H8 Linear Parameter Varying Controllers for Unmanned Aircraft

Kannan Natesan, Da-Wei Gu, Ian Postlethwaite
2007 Journal of Guidance Control and Dynamics  
In near-circular orbits, e ~ 0 and Eq. (6) reduces to 4 ] 2 ? > [o5,.]sx S 4[ 4 + 7, P3385 8x5 eh ne 05. (7) This is identical to the result obtained in [3-5].  ...  Transformation Let 8X denote the linear, unbiased, minimum variance estimate of the true state 5X and P;, the associated estimation error covariance matrix [19], Psx = E[(8X — 8X)(8X — 5X)"] “* 05, Ps hy F5  ... 
doi:10.2514/1.31283 fatcat:hng4gog6lvdzrokn37akdicirm

Neurons in primate entorhinal cortex represent gaze position in multiple spatial reference frames

Miriam L. R. Meister, Elizabeth A. Buffalo
2018 Journal of Neuroscience  
findings demonstrate that visuospatial representation is a fundamental property of entorhinal neurons in primates and suggest that entorhinal cortex may support relational memory and motor planning by coding  ...  Stimulus presentation was controlled by a PC running Cortex software (National Institute of Mental Health, Bethedsa, MD).  ...  such coding might support the memory function of this brain area.  ... 
doi:10.1523/jneurosci.2432-17.2018 pmid:29386260 pmcid:PMC5858590 fatcat:o3eidg7zw5h3nat7vw2fwydhwq

The Phoenix Deep Survey: The Clustering and Environment of Extremely Red Objects

Antonis Georgakakis, J. Afonso, A. M. Hopkins, M. Sullivan, B. Mobasher, L. E. Cram
2005 Astrophysical Journal  
Here we adopt a non-evolving elliptical galaxy model obtained from the Bruzual & Charlot (1993) stellar population synthesis code as described in Pozzeti, Bruzual & Zamorani (1996) .  ...  These r o values are in-between those of present-day ellipticals (e.g.  ...  This figure "f5.jpeg" is available in "jpeg" format from:  ... 
doi:10.1086/427144 fatcat:tejicyjbdrdjxb74lv7qojma74

Regional 3D geophysical investigation of the Sudbury Structure

Oladele Olaniyan, Richard S. Smith, Bruno Lafrance
2015 Interpretation  
Having gone through a series of syn-and post-formation orogenies, the hypothesized initial circular shape of the SIC has been deformed into an elliptical shape of about 28 km by 60 km.  ...  Airborne total magnetic intensity data (TMI) over the Sudbury structure were compiled, processed and interpreted, to define magnetic stratigraphy boundaries and near-surface lineaments.  ...  F5 2 NE trending lineament at an angle a little lesser than the Fecunis fault set Partially mapped on the bedrock map. Label Geological description Remarks Partially mapped with little offset.  ... 
doi:10.1190/int-2014-0200.1 fatcat:wtrij3g5dvcehppfmnrnlbarbq


1958 Acta Botanica Neerlandica  
diagram of inflorescence; F5. corolla (Cowan 39179).  ...  Sepals free or nearly so 3 Sepals united for over one-third of their length 5 3.  ... 
doi:10.1111/j.1438-8677.1958.tb00624.x fatcat:gumxbciz4zg45lx6d5r2mth2pa


A. O. L. Atkin
1973 Bulletin of the London Mathematical Society  
This theory has an intimate connection with the theory of elliptic curves over finite fields (cf. A. Weil, Math. Ann. 168 (1967), 149-156) .  ...  Recommended codes of engineering and industrial practice (including safety codes) developed in cooperation with interested industries, professional organizations, and regulatory bodies.  ... 
doi:10.1112/blms/5.3.366 fatcat:brwhm4zgmbhh7hnfpjssvxirha

Dot-Projection Photogrammetry and Videogrammetry of Gossamer Space Structures

Richard S. Pappa, Jonathan T. Black, Joseph R. Blandino, Thomas W. Jones, Paul M. Danehy, Adrian A. Dorrington
2003 Journal of Spacecraft and Rockets  
DISTRIBUTION CODE 13.  ...  It can also be seen near the center of Fig. l(b) .  ... 
doi:10.2514/2.7047 fatcat:wdovauus6bgg5b7qhxsipm6yii

Dot-Projection Photogrammetry and Videogrammetry of Gossamer Space Structures

Richard Pappa, Jonathan T. Black, Joseph R. Blandino, Thomas W. Jones, Paul M. Danehy, Adrian A. Dorrington
2003 Journal of Spacecraft and Rockets  
DISTRIBUTION CODE 13.  ...  It can also be seen near the center of Fig. l(b) .  ... 
doi:10.2514/1.10807 fatcat:rm4fulhbkrgipi5yo3llvrh4ey

Quantum computing with rotation-symmetric bosonic codes [article]

Arne L. Grimsmo, Joshua Combes, Ben Q. Baragiola
2019 arXiv   pre-print
Bosonic rotation codes, introduced here, are a broad class of bosonic error-correcting codes based on phase-space rotation symmetry.  ...  Finally, we present a scheme for fault-tolerant, universal quantum computing based on concatenation of number-phase codes and Bacon-Shor subsystem codes.  ...  (F5): J e tLκ φ = e tLκ φ J (F8) J e t(Lκ−C) = e −κt e t(Lκ−C) J . 2ρL †L .  ... 
arXiv:1901.08071v3 fatcat:yjxxi2lzgbhpnkpfqxvke7pimi

Relevance of time‐varying properties of the first formant frequency in vowel representation

Maria‐Gabriella Di Benedetto
1985 Journal of the Acoustical Society of America  
The calculations indicate the presence of a deep noise notch over the slope (for certain basin and shelf noise generating locations) which is deepest near the ocean surface (25 dB} and which decays with  ...  In this system, a split-band adaptive predictive coding scheme with gradient PARCOR lattice filter and a dynamic bit allocation scheme are employed, where quantization bits are dynamically allocated over  ...  The integration over the angle is performed partly analytically in terms of elliptic integrals and partly numeriCally using simple Gaussian quadrature formula.  ... 
doi:10.1121/1.2023018 fatcat:3lbckbce2rglzj7zx3fp4nhiui

URSI National Committee Report: Commission 6. Radio Waves and Circuits. Part 1. Information Theory and Coding

P. Elias
1960 Journal of Research of the National Bureau of Standards Section D Radio Propagation  
Since 1957, there has been considerable progress i n the theo ry of coding messages for transmission over noisy channels. There have been three main directions of advance.  ...  Second, there are now available several kinds of large block codes and sequential codes which ~ll permit very reliable transmission over long dIstance scatter ch3:nnels , which can also be implemented.  ...  near the other element.  ... 
doi:10.6028/jres.064d.076 fatcat:as4o4awtpzaevjutixsygjqbpm
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