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Enhancing epidemiological analysis of intercontinental dispersion of H5N1 viral strains by migratory waterfowl using phylogeography

Dhananjai M Rao
2014 BMC Proceedings  
The temporo-geospatial characteristics of infection transmission provides corroborating, but novel evidence for rapid genesis of H5N1 lineages in S.E. Asia.  ...  Dominant infection pathways (25,625 and 54,500 in summering and wintering zones) were identified through annotation using phylogeographical data computed from the phylogram of 2417 H5N1 HA isolates (from  ...  Declarations This work was funded in part by the Ohio Supercomputer Center  ... 
doi:10.1186/1753-6561-8-s6-s1 pmid:25374610 pmcid:PMC4202179 fatcat:7jd6jzf3gfhs5cwwt6mr2zdrdm

Abstract Overview

2016 Virus Evolution  
The factors behind the emergence of these viruses are poorly understood, in part because of sparse sampling immediately after the identification of H5N1 in 1996.  ...  A46 High incidence of bacterial co-infections in patients infected A55 Diversity and dynamics of rotaviruses in human, pigs and rats in Vietnam using agnostic whole-genome deep sequencing from Dominica  ...  The partial sequences of the translation elongation factor gene (EF-1a) and of the internally transcribed spacers of the rDNA region (ITS1-5.8S-ITS2) were used in a multi-locus sequence comparison.  ... 
doi:10.1093/ve/vev024 fatcat:3nmhlaiobbcjrhsy72agc2oide

Molecular Epidemiology of Fonsecaea Species

Mohammad Javad Najafzadeh
2011 Emerging Infectious Diseases  
Acknowledgments We thank Gunilla Stridh Ekman for providing data on antimicrobial drug use and the staff at the municipal preschools for assisting in the collection of diapers.  ...  Recently, the first use of MinION for real-time metagenomic sequencing of bronchoalveolar lavage (BAL) specimens in pneumonia patients was reported (6).  ...  To evaluate model adequacy, we conducted a simulation study with the model to compare the estimated and observed risks of groups with different characteristics (online Technical Appendix).  ... 
doi:10.3201/1703.100555 fatcat:4bb26n73mfah7a3ujwyzyyeudy