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Repetitive sequences in Eragrostis curvula cDNA EST libraries obtained from genotypes with different ploidy

J. Romero, J. P. Selva, S. Pessino, V. Echenique, I. Garbus
<span title="2015-12-18">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fg46ucgzubbjpavo4z2zeaykkq" style="color: black;">Biologia plantarum</a> </i> &nbsp;
The different contribution of ESTs with identity to TEs among libraries was further evaluated, and such differences were validated through RT-qPCR.  ...  The euploid series of Eragrostis curvula is a useful model to the study of epigenomic changes produced after changes in ploidy.  ...  that involve large genome changes that can disrupt the mechanisms of TE control.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10535-015-0569-z">doi:10.1007/s10535-015-0569-z</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/etaxyafvajc7jkaf6reg4654pq">fatcat:etaxyafvajc7jkaf6reg4654pq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200307113437/https://ri.conicet.gov.ar/bitstream/handle/11336/52432/CONICET_Digital_Nro.75741dc6-5d00-40ba-8d99-d775a11df727_A.pdf;jsessionid=4D1098A1724E982D052C5256AFE291B9?sequence=2" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/95/90/9590583196c1114387b0d4d1259396a9e32176bb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10535-015-0569-z"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

CoCoNUT: an efficient system for the comparison and analysis of genomes

Mohamed I Abouelhoda, Stefan Kurtz, Enno Ohlebusch
<span title="2008-11-12">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
cDNA/EST to genomic sequences.  ...  This area of research is driven by the large number of sequenced genomes and heavily relies on efficient algorithms and software to perform pairwise and multiple genome comparisons.  ...  We would like to thank the anonymous reviewers for valuable comments on a previous version of the article.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-9-476">doi:10.1186/1471-2105-9-476</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19014477">pmid:19014477</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3224568/">pmcid:PMC3224568</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mr5dvlfk3jgxjoihuk5nojomxi">fatcat:mr5dvlfk3jgxjoihuk5nojomxi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20140226161448/http://www.biomedcentral.com/content/pdf/1471-2105-9-476.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9c/4c/9c4c6d95e65a29ccae480d3ef56c2f265a5975ef.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-9-476"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224568" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SilkDB: a knowledgebase for silkworm biology and genomics

J. Wang
<span title="2004-12-17">2004</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
With the recent accomplishment of a 6X draft genome sequence of the domestic silkworm (Bombyx mori ), SilkDB provides an integrated representation of the large-scale, genome-wide sequence assembly, cDNAs  ...  Designed as a basic platform, SilkDB strives to provide a comprehensive knowledgebase about the silkworm and present the silkworm genome and related information in systematic and graphical ways for the  ...  Users may center the map upon a point on the scaffold of interest and expand to obtain a more detailed view of genetic markers, predicted genes, cDNAs, EST clusters of both the domestic and wild silkworm  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki116">doi:10.1093/nar/gki116</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15608225">pmid:15608225</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC540070/">pmcid:PMC540070</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7oz7br24xfa45mr53n4apdmjji">fatcat:7oz7br24xfa45mr53n4apdmjji</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190307053700/http://pdfs.semanticscholar.org/dba8/6d37e0ff6b5b5228ad84e5bce19fa454d660.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/db/a8/dba86d37e0ff6b5b5228ad84e5bce19fa454d660.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki116"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540070" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

How Can We Use Genomics to Improve Cereals with Rice as a Reference Genome?

Yunbi Xu, Susan R. McCouch, Qifa Zhang
<span title="">2005</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/j5izudb7qzctnnunqymhmjcrt4" style="color: black;">Plant Molecular Biology</a> </i> &nbsp;
An integrated database that combines genome information for rice and other cereals is key to the effective utilization of all genomics resources for cereal improvement.  ...  Both macrocolinearity revealed by comparative mapping and microcolinearity revealed by sequence comparisons among the grasses indicate that sequencing and functional analysis of the rice genome will have  ...  However, it may be possible to use comparative maps to isolate a mapped gene from a large genome using a related plant with a small genome.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11103-004-4681-2">doi:10.1007/s11103-004-4681-2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16217598">pmid:16217598</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ooikndcqhrabzgvgvdouv4idhe">fatcat:ooikndcqhrabzgvgvdouv4idhe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809133832/http://image.sciencenet.cn/olddata/kexue.com.cn/upload/blog/file/2010/12/2010129144555464919.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0c/b2/0cb27f22db10d95aca6b6c06ae75029dc924d45c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11103-004-4681-2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Computational methods for alternative splicing prediction

P. Bonizzoni
<span title="2006-02-23">2006</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/db7gv4nqurbrhk7jywtr3wbcme" style="color: black;">Briefings in Functional Genomics &amp; Proteomics</a> </i> &nbsp;
The fact that a large majority of mammalian genes are subject to alternative splicing indicates that this phenomenon represents a major mechanism for increasing proteome complexity.  ...  Here, we provide an overview of current methods for the computational prediction of alternative splicing based on the alignment of genome and transcript sequences.  ...  Moreover, it is more computationally efficient than programmes such as BLAT or SQUALL (e.g. few seconds for the alignment of a single cDNA against a large genome sequence and a very limited RAM requirement  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bfgp/ell011">doi:10.1093/bfgp/ell011</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16769678">pmid:16769678</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/agpf2erqgbfnpmzfftlvs4svim">fatcat:agpf2erqgbfnpmzfftlvs4svim</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170707044543/https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/bfg/5/1/10.1093/bfgp/ell011/2/ell011.pdf?Expires=1499486950&amp;Signature=bdi2Rqhl7VWRqInjAAnf6gREceeh0jCVNNe~-l5r0Q-4EF7nhsYwYW0rGaSv1uoNTwAb7HMXov4RWr3mxhYcI6TiLeMjSJNxFesgozRAS-NeT-buBlFsrcdI2tA9bm~0ZwBVveEhfBlS5Nolc1at7IgWXtS~vuSuAiJb8neUyYch1J6tCA2OJAwHj7pIwxFqs537Js9lh-KWChx1XvLIxr~Ns-7Y2Xnom9DMBI8RITjVccryPo0AMihE9Lzw7vw2JeY7wXWJvLFDOeOev3cis2uG0ihjil7FP~4ByKo-hWl4Y6Zx5S-4dfDeqw1VuMeWcGlXGWqiEymO2sqqLGjC1Q__&amp;Key-Pair-Id=APKAIUCZBIA4LVPAVW3Q" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ad/e0/ade0faf3dd0101511a8a46747f38e0e472b8fb5d.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bfgp/ell011"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Genomics applied to the study of adaptation in pine species

M. A. Guevara, A. Soto, C. Collada, C. Plomion, O. Savolainen, D. B. Neale, S. C. Gonzalez-Martinez, M. T. Cervera
<span title="2005-12-01">2005</span> <i title="Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2q4m2l5jrnbihok5syjyg2klqi" style="color: black;">Investigación Agraria</a> </i> &nbsp;
We briefly discuss molecular tools that permit to acquire a comprehensive view of pine genome, such as cytogenetic and genetic linkage maps.  ...  We will also discuss the application of two complementary strategies to dissect complex adaptive traits based on linkage disequilibrium between neutral molecular markers and quantitative trait loci: QTL  ...  Acknowledgements This review was carried out in the frame of the Spanish research project RTA03-213, from the Programa Nacional de Recursos y Tecnologías Agroalimentarias (Ministerio de Educación y Ciencia  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5424/srf/2005143-00918">doi:10.5424/srf/2005143-00918</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t46kboqxb5cq5bxjn76fvtmkba">fatcat:t46kboqxb5cq5bxjn76fvtmkba</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180719224550/http://revistas.inia.es/index.php/fs/article/download/918/915" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/50/07/50070f9c8c2e3ef58356eca15e37592c68be078c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5424/srf/2005143-00918"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Rice genomics moves ahead

Saurabh Raghuvanshi, Meenu Kapoor, Shashi Tyagi, Sanjay Kapoor, Paramjit Khurana, Jitendra Khurana, Akhilesh Tyagi
<span title="2009-12-18">2009</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4mtd2ytcejeufiqjwpadjkgjpy" style="color: black;">Molecular breeding</a> </i> &nbsp;
Efforts are on to fill the gap between the genome and the phenotype. This may lead to regular practice of genomics-assisted breeding of rice.  ...  Rice is one of the pillars of world-wide food security. Improvement in its yield is necessary to mitigate hunger of millions of people who depend on rice as a staple.  ...  Acknowledgments Our research is supported by DBT, DST and UGC, Government of India.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11032-009-9367-7">doi:10.1007/s11032-009-9367-7</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3ugoz7slzbgabkufilq7b6zsx4">fatcat:3ugoz7slzbgabkufilq7b6zsx4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808223118/http://image.sciencenet.cn/olddata/kexue.com.cn/upload/blog/file/2010/10/2010109202559536181.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a5/0d/a50d008ed42b98c239e502e2b0bfe14e240f5ae9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s11032-009-9367-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Functional genomics: tools for improving farm animal health and welfare

S Hiendleder, S Bauersachs, A Boulesteix, H Blum, G J Arnold, T Fröhlich, E Wolf
<span title="">2005</span> <i title="O.I.E (World Organisation for Animal Health)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3zyht7er2vbyrfjdkeqhumaanu" style="color: black;">Rev Sci Tech Off Int Epizoot</a> </i> &nbsp;
In addition, large collections of expressed sequences have been obtained, which will aid in constructing annotated transcript maps for many economically important species.  ...  Functional genomics, defined as applying global experimental approaches to assess gene function, by using the information and reagents provided by structural genomics (i.e. mapping and sequencing), has  ...  Acknowledgements The functional genomics projects of the authors are funded by the Deutsche Forschungsgemeinschaft, the Bundesministerium für Bildung und Forschung and the Bayerische Forschungsstiftung  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16110902">pmid:16110902</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/twfiava4ofbqjcmfraki343p2u">fatcat:twfiava4ofbqjcmfraki343p2u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200709060611/https://www.oie.int/doc/ged/D1957.PDF" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f4/dc/f4dc0e9d42fbcbba700ae666f0d2bdd06220f814.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Report on the Forest Trees Workshop at the Plant and Animal Genome Conference

Christophe Plomion, Janice Cooke, Tom Richardson, John Mackay, Gerald Tuskan
<span title="">2003</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eaz5kv6drnd7hlqjuszvrhtqnm" style="color: black;">Comparative and Functional Genomics</a> </i> &nbsp;
This session emphasized the use of genetic linkage maps as essential tools to (a) provide information  ...  They can be developed relatively easily from existing cDNA/EST libraries and large gene discovery projects. While the first comparative mapping studies only focused on Pinus species, K.  ...  Comparative mapping with loblolly pine allowed for comparison of QTL locations between the two pine species.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cfg.262">doi:10.1002/cfg.262</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18629127">pmid:18629127</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2447414/">pmcid:PMC2447414</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qo4k5wiwjvbyne7aew4ttwgi6u">fatcat:qo4k5wiwjvbyne7aew4ttwgi6u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201107170829/https://hal.inrae.fr/hal-02679047/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3e/b4/3eb4182f436ea68d5afbb1b2162fef1b775fd768.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/cfg.262"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447414" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Probability landscapes for integrative genomics

Annick Lesne, Arndt Benecke
<span title="">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/gdqzxgkaenh3xnqi2umstfxgva" style="color: black;">Theoretical Biology and Medical Modelling</a> </i> &nbsp;
Conclusion: Probability landscapes, which include as reference set the probabilistic representation of the genomic sequence, can be used efficiently to discover and analyze correlations amongst initially  ...  The comprehension of the gene regulatory code in eukaryotes is one of the major challenges of systems biology, and is a requirement for the development of novel therapeutic strategies for multifactorial  ...  We equally thankful to all members of our research team for stimulating discussions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1742-4682-5-9">doi:10.1186/1742-4682-5-9</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18492240">pmid:18492240</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2409305/">pmcid:PMC2409305</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vtbzcqn5ync4jjkbq2zess7pj4">fatcat:vtbzcqn5ync4jjkbq2zess7pj4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170822120158/https://link.springer.com/content/pdf/10.1186%2F1742-4682-5-9.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/83/ff83d9f8e23f229b53671d082e9e18642f4e101c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1742-4682-5-9"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409305" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Finishing the euchromatic sequence of the human genome

International Human Genome Sequencing Consortium
<span title="2004-10-21">2004</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/drfdii35rzaibj3aml5uhvr5xm" style="color: black;">Nature</a> </i> &nbsp;
In addition to finished sequence produced by the IHGSC between the time of publication of the draft human genome and April 2003, Build 35 contains some significant published finished sequence from other  ...  Leja for graphic design and production of the figures. We would also like to thank the many dedicated support staff at the sequencing centres and funding agencies.  ...  Focusing on individual Box 1 Finishing the physical map The hierarchical strategy used two kinds of genome maps as a foundation for producing finished sequence: sequence-tagged site (STS) maps 6 and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nature03001">doi:10.1038/nature03001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15496913">pmid:15496913</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6agf6qtmtva23jevgatmxkq3tq">fatcat:6agf6qtmtva23jevgatmxkq3tq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191020024634/https://www.nature.com/articles/nature03001.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/27/17/2717f978a2820514c8406b0c5dc8f17fd3851858.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nature03001"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence

Liliana Florea, George Hartzell, Zheng Zhang, Gerald M. Rubin, Webb Miller
<span title="1998-09-01">1998</span> <i title="Cold Spring Harbor Laboratory"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwro4atxwbec5pfkpfslaxbdae" style="color: black;">Genome Research</a> </i> &nbsp;
We address the problem of efficiently aligning a transcribed and spliced DNA sequence with a genomic sequence containing that gene, allowing for introns in the genomic sequence and a relatively small number  ...  of sequencing errors.  ...  This work was supported in part by a grant from the National Human Genome Research Institute to G.M.R. and by grant R01 LM05110 from the National Library of Medicine to W.M.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/gr.8.9.967">doi:10.1101/gr.8.9.967</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/9750195">pmid:9750195</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC310774/">pmcid:PMC310774</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6uhwp2nrq5asdd2i7m7kecwhie">fatcat:6uhwp2nrq5asdd2i7m7kecwhie</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180719215505/https://genome.cshlp.org/content/8/9/967.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a7/8a/a78a57ba8a4517c477883d0074c0ab9aa1d3fb39.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/gr.8.9.967"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310774" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Pea (Pisum sativum L.) in the Genomic Era

Petr Smýkal, Gregoire Aubert, Judith Burstin, Clarice J. Coyne, Noel T. H. Ellis, Andrew J. Flavell, Rebecca Ford, Miroslav Hýbl, Jiří Macas, Pavel Neumann, Kevin E. McPhee, Robert J. Redden (+3 others)
<span title="2012-04-04">2012</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yws6xlpwzjf7llvhkn3wayuvfu" style="color: black;">Agronomy</a> </i> &nbsp;
The availability of the full genome sequences of three legume species has offered significant opportunities for genome wide comparison revealing synteny and co-linearity to pea.  ...  Association mapping analysis of diverse pea germplasm promises to identify genetic variation related to desirable agronomic traits, which are historically difficult to breed for in a traditional manner  ...  These collections act as toolkits for association mapping, a strategy to gain insight into genes and genomic regions underlying desired traits [55] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy2020074">doi:10.3390/agronomy2020074</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j7asznzqandfvfn4z3rr27vjay">fatcat:j7asznzqandfvfn4z3rr27vjay</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706164717/http://www.mdpi.com/2073-4395/2/2/74/pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/a7/70/a7702deb650964e8babf6b7d2aa91e5d71359cec.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/agronomy2020074"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Genomic characterization of putative allergen genes in peach/almond and their synteny with apple

Lin Chen, Shuiming Zhang, Eudald Illa, Lijuan Song, Shandong Wu, Werner Howad, Pere Arús, Eric Weg, Kunsong Chen, Zhongshan Gao
<span title="2008-11-17">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4srzxifvfrdlhjhg3dimznkp7m" style="color: black;">BMC Genomics</a> </i> &nbsp;
Three Pru p/du 3 genes (3.01-3.03) containing an intron and a mini exon of 10 nt were mapped in a cluster on G6. Two Pru p/du 4 genes (Pru p/du 4.01 and 4.02) were located on G1 and G7, respectively.  ...  Five Pru p/du 2 genes were mapped on four different linkage groups, two very similar Pru p/du 2.01 genes (A and B) were on G3, Pru p/du 2.02 on G7,Pru p/du 2.03 on G8 and Pru p/du 2.04 on G1.  ...  Luud Gilissen for his critical reading of this manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2164-9-543">doi:10.1186/1471-2164-9-543</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19014629">pmid:19014629</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2621206/">pmcid:PMC2621206</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/kxahv6ebjzg5hp5z7zm3fgai7m">fatcat:kxahv6ebjzg5hp5z7zm3fgai7m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171129104621/https://core.ac.uk/download/pdf/36039409.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/ed/1eeda2bbb84a780d1178adc1c83b6df6b0e00163.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2164-9-543"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2621206" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Sequence-tagged connectors: A sequence approach to mapping and scanning the human genome

G. G. Mahairas, J. C. Wallace, K. Smith, S. Swartzell, T. Holzman, A. Keller, R. Shaker, J. Furlong, J. Young, S. Zhao, M. D. Adams, L. Hood
<span title="1999-08-17">1999</span> <i title="Proceedings of the National Academy of Sciences"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nvtuoas5pbdsllkntnhizy4f4q" style="color: black;">Proceedings of the National Academy of Sciences of the United States of America</a> </i> &nbsp;
By reiterating this "sequence-then-map by computer analysis against the STC database" strategy, a minimum tiling path of clones can be sequenced at a rate that is primarily limited by the sequencing throughput  ...  The sequence-tagged connector (STC) strategy proposes to generate sequence tags densely scattered (every 3.3 kilobases) across the human genome by arraying 450,000 bacterial artificial chromosomes (BACs  ...  This research was supported by a grant from the Department of Energy. We would also like to acknowledge the staff of the High-Throughput Sequencing Center for their outstanding sequencing efforts.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.96.17.9739">doi:10.1073/pnas.96.17.9739</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/10449764">pmid:10449764</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC22280/">pmcid:PMC22280</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/k45fg3o3brb3viutsqvfhck6ma">fatcat:k45fg3o3brb3viutsqvfhck6ma</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20041207111117/http://staff.washington.edu:80/rshaker/papers/sequence-tagged-paper-pnas-1998.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/be/1f/be1fd3cfe7d00aa12fad6395bda902b8a7b2c3f4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.96.17.9739"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC22280" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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