Filters








855 Hits in 9.8 sec

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization EM training and Viterbi training [article]

Tin Yin Lam, Irmtraud M. Meyer
2012 arXiv   pre-print
Conclusions: Bioinformatics applications employing hidden Markov models can use the two algorithms in order to make Viterbi training and stochastic EM training more computationally efficient.  ...  Results: We introduce two computationally efficient training algorithms, one for Viterbi training and one for stochastic expectation maximization (EM) training, which render the memory requirements independent  ...  Acknowledgments Both authors gratefully acknowledge support from an NSERC Discovery Grant and a MITACS to I.M.M. This project was also partly supported by funding from MITACS.  ... 
arXiv:0909.0737v2 fatcat:45rglebup5envnxeq5cyyi6jca

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training

Tin Y Lam, Irmtraud M Meyer
2010 Algorithms for Molecular Biology  
Conclusions: Bioinformatics applications employing hidden Markov models can use the two algorithms in order to make Viterbi training and stochastic EM training more computationally efficient.  ...  Results: We introduce two computationally efficient training algorithms, one for Viterbi training and one for stochastic expectation maximization (EM) training, which render the memory requirements independent  ...  Both authors gratefully acknowledge support by a Discovery Grant of the Natural Sciences and Engineering Research Council, Canada, and by a Leaders Opportunity Fund of the Canada Foundation for Innovation  ... 
doi:10.1186/1748-7188-5-38 pmid:21143925 pmcid:PMC3019189 fatcat:ybcmj27t5jc2bphsvwc2hs3hni

ADJUSTED VITERBI TRAINING

Jüri Lember, Alexey Koloydenko
2007 Probability in the engineering and informational sciences (Print)  
The EM algorithm is a principal tool for parameter estimation in the hidden Markov models, where its efficient implementation is known as the Baum-Welch algorithm.  ...  The present work proves the asymptotic fixed point property of VA for general hidden Markov models.  ...  Introduction We consider procedures to estimate parameters of a finite state hidden Markov model (HMM) given observations x 1 , . . . , x n .  ... 
doi:10.1017/s0269964807000083 fatcat:x5asomvfyrfu7jes6mejr6eclq

On Adjusted Viterbi Training

Alexey Koloydenko, Meelis Käärik, Jüri Lember
2007 Acta Applicandae Mathematicae - An International Survey Journal on Applying Mathematics and Mathematical Applications  
The EM algorithm is a principal tool for parameter estimation in the hidden Markov models, where its efficient implementation is known as the Baum-Welch algorithm.  ...  The present work proves the asymptotic fixed point property of VA for general hidden Markov models.  ...  Introduction We consider procedures to estimate parameters of a finite state hidden Markov model (HMM) given observations x 1 , . . . , x n .  ... 
doi:10.1007/s10440-007-9102-5 fatcat:xqf6nv26wngmxhd2qybtx6vw3y

Edge Detection using Stationary Wavelet Transform, HMM, and EM algorithm [article]

S.Anand, K.Nagajothi, K.Nithya
2020 arXiv   pre-print
This paper a new edge detection technique using SWT based Hidden Markov Model (WHMM) along with the expectation-maximization (EM) algorithm is proposed.  ...  Laplacian and Gaussian model is used to check the information of the state is an edge or no edge. This model is trained by an EM algorithm and the Viterbi algorithm is employed to recover the state.  ...  EXPECTATION-MAXIMIZATION ALGORITHM: We adopt an EM algorithm [7] to train both the model.  ... 
arXiv:2004.11296v1 fatcat:vtt34o3kjjbpvjrjo4jpjwlhle

Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory

Alexander Churbanov, Stephen Winters-Hilt
2008 BMC Bioinformatics  
The Baum-Welch learning procedure for Hidden Markov Models (HMMs) provides a powerful tool for tailoring HMM topologies to data for use in knowledge discovery and clustering.  ...  We demonstrate the use of the linear memory implementation on an extended Duration Hidden Markov Model (DHMM) and on an HMM with a spike detection topology.  ...  When training the HMM using the Baum-Welch algorithm (an Expectation Maximization procedure), first we need to find the expected probabilities of being at a certain state at a certain time-point using  ... 
doi:10.1186/1471-2105-9-224 pmid:18447951 pmcid:PMC2430973 fatcat:ufym7dfdkbbfxk24ga2f2uv6sq

Pair Hidden Markov Model for Named Entity Matching [chapter]

Peter Nabende, Jörg Tiedemann, John Nerbonne
2009 Innovations and Advances in Computer Sciences and Engineering  
This paper introduces a pair-Hidden Markov Model (pair-HMM) for the task of evaluating the similarity between bilingual named entities.  ...  Keywords: Named entity, Similarity Measurement, Hidden Markov Model, pair-Hidden Markov Model I.  ...  [12] review different parameter estimation approaches for pair-HMMs including: Numerical Maximization approaches, Expectation Maximization (EM) algorithm and its variants (Stochastic EM, Stochastic  ... 
doi:10.1007/978-90-481-3658-2_87 dblp:conf/cisse/NabendeTN08 fatcat:gyx5fpgqqbcybdzdor5mk4hclu

Brief Paper: Augmentation of Hidden Markov Chain for Complex Sequential Data in Context

Bong-Kee Sin
2021 Journal of multimedia information system  
The paper sets the framework for the theory and presents an efficient inference and training algorithms based on dynamic programming and expectation-maximization.  ...  This paper proposes a new stationary parameter = ( 1 , 2 , ... , ) where N is the number of states and = (| = , ) for describing how an input pattern y ends in state = at time t followed by nothing.  ...  Section 3 provides the theory for model inference and then a set of formulae for estimating the model parameters using the expectation-maximization algorithm.  ... 
doi:10.33851/jmis.2021.8.1.31 fatcat:3vxzlle2cjberhrglnsubnvtie

A Study on High-Order Hidden Markov Models and Applications to Speech Recognition [chapter]

Lee-Min Lee, Jia-Chien Lee
2006 Lecture Notes in Computer Science  
Experimental results show that the proposed expectation-maximization (EM) training algorithm can obtain more reliable and accurate estimate of DHO-HMMs than the Viterbi training method.  ...  Viterbi decoding and training algorithms for the DHO-HMM are also presented.  ...  EM Algorithm for Model Parameter Estimation The EM algorithm is widely used for pattern recognition and machine learning.  ... 
doi:10.1007/11779568_74 fatcat:toofbdygjbbwnipnxxqlzx6jxe

Hidden Markov Model Approaches for Biological Studies

Xiang Yang Lou
2017 Biometrics & Biostatistics International Journal  
This article will introduce the theory of hidden Markov model and the computational algorithms for the three fundamental statistical problems and summarize striking applications of hidden Markov models  ...  The hidden Markov process is a class of doubly stochastic processes, characterized by Markov property and the output independence, in which an underlying Markov process is hidden, meaning the variable  ...  Acknowledgments The author likes to thank Tingting Hou and Shouye Liu for their contributions to this study.  ... 
doi:10.15406/bbij.2017.05.00139 fatcat:x5mqdr44gnbcteffu5g4ocl7c4

XRate: a fast prototyping, training and annotation tool for phylo-grammars

Peter S Klosterman, Andrew V Uzilov, Yuri R Bendaña, Robert K Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian Holmes
2006 BMC Bioinformatics  
maximum-likelihood parameters and phylogenetic trees using a novel "phylo-EM" algorithm that we describe.  ...  Recent years have seen the emergence of genome annotation methods based on the phylo-grammar, a probabilistic model combining continuous-time Markov chains and stochastic grammars.  ...  (typically using the Expectation Maximization [EM] algorithm [14] ).  ... 
doi:10.1186/1471-2105-7-428 pmid:17018148 pmcid:PMC1622757 fatcat:3jr7rgeus5g4vbad3whvbdij24

Hidden Markov Models in Dynamic System Modelling and Diagnosis [chapter]

Tarik Al-ani
2011 Hidden Markov Models, Theory and Applications  
The basic idea behind Viterbi training is to replace the computationally costly expectation E-step of the EM algorithm by an appropriate maximization step with fewer and simpler computations.  ...  This may be obtained using the Expectation-Maximization algorithm (EM) (Dunmur & Titterington, 1998) .  ... 
doi:10.5772/15495 fatcat:oohrqvrwo5cflczxwxjbwelaj4

Missing motion data recovery using factorial hidden Markov models

Dongheui Lee, Dana Kulic, Yoshihiko Nakamura
2008 2008 IEEE International Conference on Robotics and Automation  
FHMMs allow for more efficient representation of a continuous data sequence by distributed state representation compared to hidden Markov models (HMMs).  ...  This paper proposes a method to recover missing data during observation by factorial hidden Markov models (FHMMs).  ...  ACKNOWLEDGMENT This research is supported by Japan Society for the Promotion of Science, "Category S of Grant-in-Aid for Scientist Research" and by Special Coordination Funds for Promoting Science and  ... 
doi:10.1109/robot.2008.4543449 dblp:conf/icra/LeeKN08 fatcat:n6jkvjlie5h5tdpandc2by3kja

Automatic phoneme recognition with Segmental Hidden Markov Models

Areg G. Baghdasaryan, A. A. Beex
2011 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR)  
Second, we describe the operation of the Baum-Welch re-estimation procedure for the training of the phoneme HMM models, including the K-Means and the Expectation-Maximization (EM) clustering algorithms  ...  The Hidden Markov Model (HMM) based phoneme models are trained using the Baum-Welch re-estimation procedure.  ...  Baum-Welch Re-estimation The Baum-Welch algorithm is a special case of the Expectation Maximization (EM) algorithm that is used for the estimation of the HMM parameters.  ... 
doi:10.1109/acssc.2011.6190066 dblp:conf/acssc/BaghdasaryanB11 fatcat:24jfewareneghbnsubnzrhbdha

Isolated Word Recognition by Recursive HMM Parameter Estimation Algorithm

Jūratė Vaičiulytė, Leonidas Sakalauskas
2021 Computing and informatics  
The maximum likelihood method was used to estimate the unknown parameters of the model, and an algorithm for the adapted recursive EM algorithm for HMMs parameter estimation was derived.  ...  This paper focuses on on-line IWR using a recursive hidden Markov model (HMM) multivariate parameter estimation algorithm.  ...  The recursive EM algorithm uses the Expectation-Maximization algorithm and maximum likelihood estimator to learn HMM parameters sequentially in real time.  ... 
doi:10.31577/cai_2021_2_277 fatcat:pvi6a44zx5b7phg3x4jkvj5erq
« Previous Showing results 1 — 15 out of 855 results