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Modeling the effects of HIV-1 virions and proteins on Fas-induced apoptosis of infected cells
[article]
2007
arXiv
pre-print
We report a first in modeling and simulation of the effects of the HIV proteins on the (caspase dependent) apoptotic pathway in infected cells. ...
Using the model obtained we have then run the simulations for the infected memory T cells, called also latent T cells, which, at the moment, represent the major obstacle to finding a cure for HIV. ...
In this paper, we focus on simulating the effects on the Fas-induced apoptosis caused by the HIV-1 strand R5 proteins. We report a simulation for the Fas-mediated pathway in HIV-1 infected cells. ...
arXiv:0705.2032v1
fatcat:hdnt25j4drbmvedu4clwlswkni
DISCRETE NONDETERMINISTIC MODELING OF THE FAS PATHWAY
2008
International Journal of Foundations of Computer Science
Results of our discrete simulation of the type I and type II Fas-mediated apoptotic signaling cascade are illustrated and compared with two approaches: one based on ordinary differential equations and ...
We present a refined approach for the discrete modeling of protein interactions within the environment of a single cell. ...
Acknowledgements We gratefully acknowledge support in part from a NSF GK-12 Ph.D. fellowship, support from NSF Grants CCF-0430945, CCF-0523572 and CCF-0524136, support from LA BoR RSC grant LEQSF (2004 ...
doi:10.1142/s0129054108006194
fatcat:2ycyhf5kj5b5bfdy4r7fp2w6mi
Human Immunodeficiency Virus Type 1 Protease Cleaves Procaspase 8 In Vivo
2007
Journal of Virology
Human immunodeficiency virus type 1 (HIV-1) infection causes apoptosis of infected CD4 T cells as well as uninfected (bystander) CD4 and CD8 T cells. ...
These data indicate that casp8p41 independently induces apoptosis and is a specific product of HIV-1 protease which may contribute to death of HIV-1-infected cells. ...
We gratefully acknowledge the administrative expertise of Teresa Hoff, the technical assistance of Robert Brown, the assistance with coordination and shipment of patient blood samples from Roberta Halpenny ...
doi:10.1128/jvi.02798-06
pmid:17442709
pmcid:PMC1933285
fatcat:kybf5ilkovhw7j77hlwfy6tbwe
Gene Array Studies in HIV-1 Infection
2011
Current HIV/AIDS Reports
HIV-1-infected individuals exhibit remarkable variation in the onset of disease. ...
Gene set enrichment analysis has revealed gene signatures linked to disease progression involving pathways related to metabolism, apoptosis, cell-cycle dysregulation, and T-cell signaling. ...
HIV-1-infected resting memory T cells are a major latent reservoir for infection and pose a hurdle to eradicating the virus. ...
doi:10.1007/s11904-011-0100-x
pmid:22184032
pmcid:PMC3968537
fatcat:35sfzjawnnfbpljxdikzdssrae
Comparative Analysis of Tat-Dependent and Tat-Deficient Natural Lentiviruses
2015
Veterinary Sciences
SRLVs only replicate productively in monocytes/macrophages in infected animals but not in CD4+ T cells. ...
Results may also help develop new strategies based on the attenuation of SRLVs to control the highly pathogenic HIV-1 in humans. ...
Acknowledgments We thank the National Institute of Health, AIDS Research and Reference Reagent Program for providing HIV and SIV overlapping peptides and cell lines. ...
doi:10.3390/vetsci2040293
pmid:29061947
pmcid:PMC5644649
fatcat:caziewlxufgdhcctexuohjqify
Viral Control of Mitochondrial Apoptosis
2008
PLoS Pathogens
Throughout the process of pathogen-host co- ...
or CD4/CCR5) on the surface of uninfected cells. ...
[S155]
HIV-1
Vpr
CD4 + lymphocytes ANT/VDAC
Dy m loss, IMS proteins release, caspase cascade activation
[24;S41,S113,S115]
HTLV-1
p13(II)
Lymphocytes
Rapid flux of K+ and Ca 2+ across IM, ...
doi:10.1371/journal.ppat.1000018
pmid:18516228
pmcid:PMC2376094
fatcat:gih4tmf64jefrhkwlfsvbnukz4
Molecular and Cellular Mechanisms Associated with Autoimmune Diseases
2004
International Journal of Environmental Research and Public Health
Emphasis is laid on the role of T and B cell receptor/ligand interactions, functions and malfunctions due to structural and quantitative alterations in T-B-cell cluster of antigen determinants. ...
As a result, the cost to public health from clinical management of autoimmune conditions is on the rise. ...
Acknowledgments: This research was financially supported, by two grants from National Institutes of ...
doi:10.3390/ijerph2004010039
pmid:16696180
fatcat:zq7g76ysurdstcu4g42b6v2g6i
Prime, Shock, and Kill: Priming CD4 T Cells from HIV Patients with a BCL-2 Antagonist before HIV Reactivation Reduces HIV Reservoir Size
2016
Journal of Virology
HIV killing of CD4 T cells that replicate HIV can involve HIV protease-mediated cleavage of procaspase 8 to generate a fragment (Casp8p41) that directly binds and activates the mitochondrial proapoptotic ...
infection is incurable due to a long-lived reservoir of HIV+memory CD4 T cells, and no clinically relevant interventions have been identified that reduce the number of these HIV DNA-containing cells. ...
I ntense activity is focused on identifying a clinical intervention that results in a long term, drug free remission of HIV-1 infection. ...
doi:10.1128/jvi.03179-15
pmid:26842479
pmcid:PMC4810548
fatcat:rmfsfisntncvxlzj3axxqgcsoe
Constitutive NF- B activation, normal Fas-induced apoptosis, and increased incidence of lymphoma in human herpes virus 8 K13 transgenic mice
2005
Proceedings of the National Academy of Sciences of the United States of America
HHV-8-encoded viral Fas-associated death domain-like IL-1-converting enzyme inhibitory protein (vFLIP) is one of the few viral proteins to be expressed in latently infected cells and plays a key role in ...
Collectively, our results demonstrate that HHV-8 vFLIP is an oncogenic protein that mimics the signaling activities of caspase 8 during antigen receptor signaling and could contribute to the development ...
Dennis Willerford for providing the pHSE3Ј construct. This work was supported by National Institutes of Health Grants CA85177 and AI͞AR47230 and the Mario Lemieux Foundation. ...
doi:10.1073/pnas.0408577102
pmid:16120683
pmcid:PMC1200255
fatcat:ukuijdpzifby3mfzhuuiktikl4
Impact of human immunodeficiency virus on pulmonary vascular disease
2021
Global Cardiology Science & Practice
Although chronic HIV-1 infection is independently associated with the development of pulmonary arterial hypertension, PH in people living with HIV may also be the outcome of various co-morbidities commonly ...
We also examine the interactions of HIV proteins, including Nef, Tat, and gp120 in the pulmonary vasculature and how these proteins alter the endothelial and smooth muscle function by transforming them ...
Besides its effects on co-stimulatory signals, chronic HIV infection also causes an increase in the expression of co-inhibitory molecules, such as programmed death 1 (PD-1) on CD8+ T cells. ...
doi:10.21542/gcsp.2021.12
pmid:34285903
pmcid:PMC8272407
fatcat:5qsatipqmbftlipwq2wiv4umti
P-C4 Associating HIV-1 Env trimer structures with functional Env conformational states by smFRET analysis
2018
Journal of Acquired Immune Deficiency Syndromes
We found that these GSK-3 inhibitors potently activate latent HIV-1 in both a tissue-based model of HIV latency formed in primary CD4 T cells, and in CD4 T cells isolated from HIV-infected patients. ...
The first approach is the systemic activation of HIV followed by a polyvalent "swarm" of HIV-gp120 bi-specific CAR CD4+/ CD8+ T-cells. ...
P-G3 Unravelling Adult T-cell leukemia-lymphoma (ATL) is a leukemia of mature CD4 T cells that develops after long-term infection of human T-cell leukemia virus (HTLV-1). ...
doi:10.1097/01.qai.0000532510.14481.56
fatcat:zedvdor4nnbmjaznnff6itlbgu
Abstracts from the 14th International Symposium on NeuroVirology October 25–28, 2016, Toronto, Ontario, Canada
2016
Journal of Neurovirology
A majority of these mediators as P7 HIV-1 Vpr sequence variants associate specifically with co-linear genetic determinants of viral co-receptor phenotype G r e g o r y A n t e l l 1 , Wi ll ia m D a m ...
The underlying mechanism of cognitive impairment and b r a i n i n j u r y i n p a t i e n t s w i t h H I V-a s s o c i a t e d neurocognitive disorder (HAND) on suppressive antiretroviral therapy are ...
5' and 3' LTRs of integrated HIV-1 proviral DNA copies from latently infected human CD4+ T-cells. ...
doi:10.1007/s13365-016-0478-8
pmid:27678092
fatcat:dxph35wjxzbmrnyhdcwnjlbmzq
Proceedings of the Frontiers of Retrovirology Conference 2016
2016
Retrovirology
Viral subtyping was done using online tools and drug resistannce mutations were screened using the Stanford University HIV Drug Resistance Database for Interpretation and the International AIDS Society-USA ...
Our 205 cohort samples with a viral load above 2000 copies/ml were amplified by PCR and sequenced. ...
Latent infection of long-lived memory CD4+ T cells is a major barrier to the eradication of HIV-1. ...
doi:10.1186/s12977-016-0294-5
fatcat:4oldvixbkjfkdfkl3ouqlrrxka
The Strengths, Weaknesses, Opportunities and Threats (SWOT) Analysis of HIV Type-1
2012
IOSR Journal of Pharmacy (IOSRPHR)
These include: the requirement for CCR5 and CXCR4 chemokine co-receptors for fusion prior to internalization, presence on HIV-1 envelope of conserved determinants that mediate CD4 binding, the Achilles ...
heel of HIV is a tiny stretch of amino acids numbered 421 to 423 on gp 120, the capsid proteins reveal potential weakness at the inner core of the virus, HIV proteins retain virus internal carbohydrate ...
HIV-1 induced killing is the predominant cause of CD4+ T-cell death and is caused by a necrotic, not an apoptotic, mechanism. ...
doi:10.9790/3013-2440416
fatcat:oajepxznyvcsjam6g4japvgo2u
Herpes Simplex Virus Infection Downmodulates NKG2D Ligand Expression
2009
Scandinavian Journal of Immunology
The role of different components of the immune system were addressed, ranging from innate factors, such as IFNα and NK cells, to the adaptive immune system, represented by T-cells. ...
The results are discussed with respect to the various possible levels of interaction between the innate and the adaptive immune systems. ...
than the one needed to activate CD4 + T-cells. ...
doi:10.1111/j.1365-3083.2009.02241.x
pmid:19508374
fatcat:erip6uaqcvdqpnl7cjzf4wwnfy
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