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ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage, Tony Burdett, Bert Droesbeke, Karoly Erdos, Rolando Fernandez, Alasdair Gray, Muhammad Haseeb, Flavia Penim, Cyril Pommier, Philippe Rocca-Serra, Melanie Courtot, Frederik Coppens
2021 Zenodo  
This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.  ...  This requires syntactic and semantic validation to ensure shared understanding of the entities we describe.  ...  Funding This work was funded by EMBL-EBI core funds, ELIXIR -the research infrastructure for life-science data and supported by Research Foundation -Flanders (FWO) for ELIXIR Belgium (I002819N).  ... 
doi:10.5281/zenodo.5608385 fatcat:2ncnqq2cafe2bndmmenbuxwxuu

ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage, Tony Burdett, Bert Droesbeke, Karoly Erdos, Rolando Fernandez, Alasdair Gray, Muhammad Haseeb, Flavia Penim, Cyril Pommier, Philippe Rocca-Serra, Mélanie Courtot, Frederik Coppens
2022
This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents.  ...  This requires syntactic and semantic validation to ensure shared understanding of relevant entities.  ...  Acknowledgements The authors acknowledge Sarah Cohen Boulakia for initial contributions to the project and Guillaume Cornut and Jeremy Destin for contribution to the MIAPPE to Biosamples interoperability  ... 
doi:10.1093/bioinformatics/btac195 pmid:35380605 pmcid:PMC9154242 fatcat:7ju5ee6sonfu5pvadmf43gc62i