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Development and operation of a digital platform for sharing pathology image data
2021
BMC Medical Informatics and Decision Making
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We here describe the development of a platform for providing and sharing digital pathology data to AI researchers, and highlight challenges to overcome in operating a sustainable platform in conjunction ...
Results A web-based data sharing platform was developed to share massive pathological image data in 2019. ...
For example, the size of digital pathological images from a tissue specimen is in the gigapixel range, and contains over a million cells, nuclei, and other cellular structures [14] [15] [16] [17] . ...
doi:10.1186/s12911-021-01466-1
pmid:33812383
fatcat:bpgseovvmjhajfblukh5kh5a74
The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research
2017
Cancer Research
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Effectively utilizing digital pathology data in cancer research requires the ability to manage, visualize, share, and perform quantitative analysis on these large amounts of image data, tasks that are ...
In this article, we describe the Digital Slide Archive (DSA), an open-source web-based platform for digital pathology. ...
and maintain digital pathology resources for their own tissue-based studies to enable the sharing, annotation, and analysis of their digital pathology data. ...
doi:10.1158/0008-5472.can-17-0629
pmid:29092945
fatcat:io24wwyhofe5lnrqvjsawcgggu
Role-Based Architecture for Secure Management of Telepathology Sessions
2020
Studies in Health Technology and Informatics
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This paper proposes and describes the architecture of a secure collaborative platform that integrates a web pathology viewer with role-based access control. ...
The proposed architecture is ensured by a shared medical repository that serves web pathology viewer with the medical images, using the DICOM standard. ...
Acknowledgments This work was funded by the FCT, Fundac¸a˜o para a Cieˆncia e a Tecnologia, under the project UID/CEC/00127/2019 and POCI-01-0145-FEDER-016385 (NETDIAMOND). ...
doi:10.3233/shti200243
pmid:32570466
fatcat:62xy6d7a2vek3dvxbzdzb4d7pa
International Telepathology: Promises and Pitfalls
2016
Pathobiology (Basel)
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Innovative technologies for digital imaging and telecommunications are changing the way we deliver health care. ...
Telepathology collaborations are one example of how delivering remote pathology services to patients can benefit from leveraging this change. ...
sharing whole-slide images
http://www.leicabiosystems.com/
pathology-imaging/aperio-epathology/
Precision digital pathology
platform (Omnyx)
Hardware and software services that support
sharing ...
doi:10.1159/000442390
pmid:27101287
fatcat:hpjzjnjn6vegjic34yxfwrgc2i
Digital media archive for gross pathology images based on open-source tools and Fast Healthcare Interoperability Resources (FHIR)
2021
Modern Pathology
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Using several open-source tools, including MediaWiki, we developed a flexible platform for building our digital media archive with a data schema based on the Fast Healthcare Interoperability Resources ...
Following a short pilot, we replaced the legacy method of handling gross pathology images with a new acquisition workflow and digital media archive. ...
Author contributions EM and LPL performed project conception, design, development of methodology, provided analysis and interpretation of data, writing, review, and revision of the paper. ...
doi:10.1038/s41379-021-00824-8
pmid:34035438
pmcid:PMC8144276
fatcat:xvrlb4wfvjgi3dctycftgeocxu
A flexible, open, decentralized system for digital pathology networks
2012
Studies in Health Technology and Informatics
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High-resolution digital imaging is enabling digital archiving and sharing of digitized microscopy slides and new methods for digital pathology. ...
Here we present a system architecture and implementation of a digital pathology network and share results from a production system that federates major research centers. ...
"Support for National Primate Research Center" (NIH SP51 RR000163). ...
pmid:22941985
pmcid:PMC3966426
fatcat:deramju7qfdbpppzuq4a36nfcy
Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center
2021
JAMIA Journal of the American Medical Informatics Association
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Materials and Methods We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context. ...
Objective Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing. ...
Computational pathology research from consented patient data To quickly compile and share large-scale research datasets in pathology for MSK internal and external use, we developed an Honest Broker for ...
doi:10.1093/jamia/ocab085
pmid:34260720
pmcid:PMC8344580
fatcat:apvod6cnfvc2jiool57uxh3u5i
Whole Slide Imaging for Teleconsultation: The Mount Sinai Hospital, Labcorp Dianon, and Philips Collaborative Experience
2021
Journal of Pathology Informatics
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With the emergence of whole slide imaging (WSI) and widespread access to high-speed Internet, pathology labs are now poised to implement digital pathology as a way to access diagnostic pathology expertise ...
glass slide service to a digital platform. ...
As early adopters of digital pathology, MSH, Labcorp Dianon (LCD), and Philips Digital and Computational Pathology (PDCP) shared a vision for a comprehensive digital pathology program to replace a glass ...
doi:10.4103/jpi.jpi_74_21
pmid:35070482
pmcid:PMC8721867
fatcat:eyt4n55ukjg5plyomcvjkykska
SurfaceSlide: A Multitouch Digital Pathology Platform
2012
PLoS ONE
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Digital pathology provides a digital environment for the management and interpretation of pathological images and associated data. ...
We also developed a smart caching protocol which caches the surrounding regions of a field of view in multi-resolutions thus providing a smooth and vivid user experience and reducing the delay for image ...
Acknowledgments We would like to acknowledge PathXL Ltd for the use of their PathXL i-Server and technical support.
Author Contributions ...
doi:10.1371/journal.pone.0030783
pmid:22292040
pmcid:PMC3264630
fatcat:csp6rovsdfaw7e5bwskrbr2x3i
An Image Analysis Resource for Cancer Research: PIIP—Pathology Image Informatics Platform for Visualization, Analysis, and Management
2017
Cancer Research
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Pathology Image Informatics Platform (PIIP) is an NCI/NIH sponsored project intended for managing, annotating, sharing, and quantitatively analyzing digital pathology imaging data. ...
The goal of this project is to develop and embed some commonly used image analysis applications into the Sedeen viewer to create a freely available resource for the digital pathology and cancer research ...
Gurcan, A. Madabhushi, A.L. Martel) from the National Cancer Institute. This project is also supported by Pathcore, a digital pathology software company. ...
doi:10.1158/0008-5472.can-17-0323
pmid:29092947
fatcat:pthivt4fbja4vakr6wkno5sary
Understanding the ethical and legal considerations of Digital Pathology
2021
The Journal of Pathology: Clinical Research
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Digital Pathology (DP) is a platform which has the potential to develop a truly integrated and global pathology community. ...
We ascertained that in the UK, DP is being used for diagnosis, research, and teaching, and that the platform is enabling data sharing. ...
pathology consortium, National Pathology Imaging Co-operative (NPIC), The Pathological Society of Great Britain and Ireland, and the British Division of the International Academy of Pathology (BDIAP) ...
doi:10.1002/cjp2.251
pmid:34796679
pmcid:PMC8822384
fatcat:nfg7qdzylvhjbnjhgforqanvzm
Interactive digital microscopy at the center for a cross-continent undergraduate pathology course in Mozambique
2018
Journal of Pathology Informatics
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Within this framework, both institutions embarked in a partnership, aimed to develop a blended learning course of pathology for undergraduates, shared between the two faculties and incorporating interactive ...
We selected contents from the pathology curricula of FMUP and FMUEM that were of mutual interest. We next identified and produced new contents for the shared curricula. ...
Acknowledgments The authors wish to thank IPATIMUP for giving access to the link of the digitalized slide images used by the platform. ...
doi:10.4103/jpi.jpi_63_18
pmid:30607309
pmcid:PMC6289002
fatcat:36kcwn2v6bbkvgkilaighfodbu
An Assessment of Imaging Informatics for Precision Medicine in Cancer
2017
IMIA Yearbook of Medical Informatics
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Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine. ...
Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases ...
Acknowledgements The authors would like to acknowledge the participants of the various workshops, the community of informaticians, medical imaging researchers, and clinical collaborators who are helping ...
doi:10.1055/s-0037-1606490
fatcat:4hbtzht63bfivfyhyhkr2bgbom
An Assessment of Imaging Informatics for Precision Medicine in Cancer
2017
IMIA Yearbook of Medical Informatics
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Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine. ...
Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases ...
Acknowledgements The authors would like to acknowledge the participants of the various workshops, the community of informaticians, medical imaging researchers, and clinical collaborators who are helping ...
doi:10.15265/iy-2017-041
pmid:29063549
pmcid:PMC6250996
fatcat:ktdiwnamzbat7emfmfz2ddq3py
A narrative review of digital pathology and artificial intelligence: focusing on lung cancer
2020
Translational Lung Cancer Research
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Through practice and research large archival databases of digital pathology images have been developed that will facilitate the development of artificial intelligence (AI) methods for image analysis. ...
The emergence of whole slide imaging technology allows for pathology diagnosis on a computer screen. ...
U24CA19436201, U01CA220401 and National Institute of Biomedical Imaging and Bioengineering U01CA220401. ...
doi:10.21037/tlcr-20-591
fatcat:xzyj6ly2hzbhlepzl4nfliwncy
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