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Development and operation of a digital platform for sharing pathology image data

Yunsook Kang, Yoo Jung Kim, Seongkeun Park, Gun Ro, Choyeon Hong, Hyungjoon Jang, Sungduk Cho, Won Jae Hong, Dong Un Kang, Jonghoon Chun, Kyoungbun Lee, Gyeong Hoon Kang (+8 others)
2021 BMC Medical Informatics and Decision Making  
We here describe the development of a platform for providing and sharing digital pathology data to AI researchers, and highlight challenges to overcome in operating a sustainable platform in conjunction  ...  Results A web-based data sharing platform was developed to share massive pathological image data in 2019.  ...  For example, the size of digital pathological images from a tissue specimen is in the gigapixel range, and contains over a million cells, nuclei, and other cellular structures [14] [15] [16] [17] .  ... 
doi:10.1186/s12911-021-01466-1 pmid:33812383 fatcat:bpgseovvmjhajfblukh5kh5a74

The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research

David A. Gutman, Mohammed Khalilia, Sanghoon Lee, Michael Nalisnik, Zach Mullen, Jonathan Beezley, Deepak R. Chittajallu, David Manthey, Lee A.D. Cooper
2017 Cancer Research  
Effectively utilizing digital pathology data in cancer research requires the ability to manage, visualize, share, and perform quantitative analysis on these large amounts of image data, tasks that are  ...  In this article, we describe the Digital Slide Archive (DSA), an open-source web-based platform for digital pathology.  ...  and maintain digital pathology resources for their own tissue-based studies to enable the sharing, annotation, and analysis of their digital pathology data.  ... 
doi:10.1158/0008-5472.can-17-0629 pmid:29092945 fatcat:io24wwyhofe5lnrqvjsawcgggu

Role-Based Architecture for Secure Management of Telepathology Sessions

Rui Jesus, Pedro Nunes, Rui Lebre, Carlos Costa
2020 Studies in Health Technology and Informatics  
This paper proposes and describes the architecture of a secure collaborative platform that integrates a web pathology viewer with role-based access control.  ...  The proposed architecture is ensured by a shared medical repository that serves web pathology viewer with the medical images, using the DICOM standard.  ...  Acknowledgments This work was funded by the FCT, Fundac¸a˜o para a Cieˆncia e a Tecnologia, under the project UID/CEC/00127/2019 and POCI-01-0145-FEDER-016385 (NETDIAMOND).  ... 
doi:10.3233/shti200243 pmid:32570466 fatcat:62xy6d7a2vek3dvxbzdzb4d7pa

International Telepathology: Promises and Pitfalls

Navid Farahani, Michael Riben, Andrew J. Evans, Liron Pantanowitz
2016 Pathobiology (Basel)  
Innovative technologies for digital imaging and telecommunications are changing the way we deliver health care.  ...  Telepathology collaborations are one example of how delivering remote pathology services to patients can benefit from leveraging this change.  ...  sharing whole-slide images http://www.leicabiosystems.com/ pathology-imaging/aperio-epathology/ Precision digital pathology platform (Omnyx) Hardware and software services that support sharing  ... 
doi:10.1159/000442390 pmid:27101287 fatcat:hpjzjnjn6vegjic34yxfwrgc2i

Digital media archive for gross pathology images based on open-source tools and Fast Healthcare Interoperability Resources (FHIR)

Emilio Madrigal, Long Phi Le
2021 Modern Pathology  
Using several open-source tools, including MediaWiki, we developed a flexible platform for building our digital media archive with a data schema based on the Fast Healthcare Interoperability Resources  ...  Following a short pilot, we replaced the legacy method of handling gross pathology images with a new acquisition workflow and digital media archive.  ...  Author contributions EM and LPL performed project conception, design, development of methodology, provided analysis and interpretation of data, writing, review, and revision of the paper.  ... 
doi:10.1038/s41379-021-00824-8 pmid:34035438 pmcid:PMC8144276 fatcat:xvrlb4wfvjgi3dctycftgeocxu

A flexible, open, decentralized system for digital pathology networks

Robert Schuler, David E Smith, Gowri Kumaraguruparan, Ann Chervenak, Anne D Lewis, Dallas M Hyde, Carl Kesselman
2012 Studies in Health Technology and Informatics  
High-resolution digital imaging is enabling digital archiving and sharing of digitized microscopy slides and new methods for digital pathology.  ...  Here we present a system architecture and implementation of a digital pathology network and share results from a production system that federates major research centers.  ...  "Support for National Primate Research Center" (NIH SP51 RR000163).  ... 
pmid:22941985 pmcid:PMC3966426 fatcat:deramju7qfdbpppzuq4a36nfcy

Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center

Peter J Schüffler, Luke Geneslaw, D Vijay K Yarlagadda, Matthew G Hanna, Jennifer Samboy, Evangelos Stamelos, Chad Vanderbilt, John Philip, Marc-Henri Jean, Lorraine Corsale, Allyne Manzo, Neeraj H G Paramasivam (+20 others)
2021 JAMIA Journal of the American Medical Informatics Association  
Materials and Methods We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context.  ...  Objective Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing.  ...  Computational pathology research from consented patient data To quickly compile and share large-scale research datasets in pathology for MSK internal and external use, we developed an Honest Broker for  ... 
doi:10.1093/jamia/ocab085 pmid:34260720 pmcid:PMC8344580 fatcat:apvod6cnfvc2jiool57uxh3u5i

Whole Slide Imaging for Teleconsultation: The Mount Sinai Hospital, Labcorp Dianon, and Philips Collaborative Experience

Mehrvash Haghighi, Jay Tolley, Agostino N Schito, Ricky Kwan, Chris Garcia, Shakira Prince, Noam Harpaz, Swan N Thung, Catherine K Craven, Carlos Cordon-Cardo, William H Westra
2021 Journal of Pathology Informatics  
With the emergence of whole slide imaging (WSI) and widespread access to high-speed Internet, pathology labs are now poised to implement digital pathology as a way to access diagnostic pathology expertise  ...  glass slide service to a digital platform.  ...  As early adopters of digital pathology, MSH, Labcorp Dianon (LCD), and Philips Digital and Computational Pathology (PDCP) shared a vision for a comprehensive digital pathology program to replace a glass  ... 
doi:10.4103/jpi.jpi_74_21 pmid:35070482 pmcid:PMC8721867 fatcat:eyt4n55ukjg5plyomcvjkykska

SurfaceSlide: A Multitouch Digital Pathology Platform

Yinhai Wang, Kate E. Williamson, Paul J. Kelly, Jacqueline A. James, Peter W. Hamilton, Indra Neil Sarkar
2012 PLoS ONE  
Digital pathology provides a digital environment for the management and interpretation of pathological images and associated data.  ...  We also developed a smart caching protocol which caches the surrounding regions of a field of view in multi-resolutions thus providing a smooth and vivid user experience and reducing the delay for image  ...  Acknowledgments We would like to acknowledge PathXL Ltd for the use of their PathXL i-Server and technical support. Author Contributions  ... 
doi:10.1371/journal.pone.0030783 pmid:22292040 pmcid:PMC3264630 fatcat:csp6rovsdfaw7e5bwskrbr2x3i

An Image Analysis Resource for Cancer Research: PIIP—Pathology Image Informatics Platform for Visualization, Analysis, and Management

Anne L. Martel, Dan Hosseinzadeh, Caglar Senaras, Yu Zhou, Azadeh Yazdanpanah, Rushin Shojaii, Emily S. Patterson, Anant Madabhushi, Metin N. Gurcan
2017 Cancer Research  
Pathology Image Informatics Platform (PIIP) is an NCI/NIH sponsored project intended for managing, annotating, sharing, and quantitatively analyzing digital pathology imaging data.  ...  The goal of this project is to develop and embed some commonly used image analysis applications into the Sedeen viewer to create a freely available resource for the digital pathology and cancer research  ...  Gurcan, A. Madabhushi, A.L. Martel) from the National Cancer Institute. This project is also supported by Pathcore, a digital pathology software company.  ... 
doi:10.1158/0008-5472.can-17-0323 pmid:29092947 fatcat:pthivt4fbja4vakr6wkno5sary

Understanding the ethical and legal considerations of Digital Pathology

Cheryl Coulter, Francis McKay, Nina Hallowell, Lisa Browning, Richard Colling, Philip Macklin, Tom Sorell, Muhammad Aslam, Gareth Bryson, Darren Treanor, Clare Verrill
2021 The Journal of Pathology: Clinical Research  
Digital Pathology (DP) is a platform which has the potential to develop a truly integrated and global pathology community.  ...  We ascertained that in the UK, DP is being used for diagnosis, research, and teaching, and that the platform is enabling data sharing.  ...  pathology consortium, National Pathology Imaging Co-operative (NPIC), The Pathological Society of Great Britain and Ireland, and the British Division of the International Academy of Pathology (BDIAP)  ... 
doi:10.1002/cjp2.251 pmid:34796679 pmcid:PMC8822384 fatcat:nfg7qdzylvhjbnjhgforqanvzm

Interactive digital microscopy at the center for a cross-continent undergraduate pathology course in Mozambique

Carla Carrilho, Leonor David, Isabel Martins, MamudoRafik Ismail, Fabíola Fernandes, Mohsin Sidat, Mário Seixas, Elsa Fonseca
2018 Journal of Pathology Informatics  
Within this framework, both institutions embarked in a partnership, aimed to develop a blended learning course of pathology for undergraduates, shared between the two faculties and incorporating interactive  ...  We selected contents from the pathology curricula of FMUP and FMUEM that were of mutual interest. We next identified and produced new contents for the shared curricula.  ...  Acknowledgments The authors wish to thank IPATIMUP for giving access to the link of the digitalized slide images used by the platform.  ... 
doi:10.4103/jpi.jpi_63_18 pmid:30607309 pmcid:PMC6289002 fatcat:36kcwn2v6bbkvgkilaighfodbu

An Assessment of Imaging Informatics for Precision Medicine in Cancer

C. Chennubhotla, L. P. Clarke, A. Fedorov, D. Foran, G. Harris, E. Helton, R. Nordstrom, F. Prior, D. Rubin, J. H. Saltz, E. Shalley, A. Sharma
2017 IMIA Yearbook of Medical Informatics  
Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine.  ...  Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases  ...  Acknowledgements The authors would like to acknowledge the participants of the various workshops, the community of informaticians, medical imaging researchers, and clinical collaborators who are helping  ... 
doi:10.1055/s-0037-1606490 fatcat:4hbtzht63bfivfyhyhkr2bgbom

An Assessment of Imaging Informatics for Precision Medicine in Cancer

C. Chennubhotla, L. P. Clarke, A. Fedorov, D. Foran, G. Harris, E. Helton, R. Nordstrom, F. Prior, D. Rubin, J. H. Saltz, E. Shalley, A. Sharma
2017 IMIA Yearbook of Medical Informatics  
Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine.  ...  Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases  ...  Acknowledgements The authors would like to acknowledge the participants of the various workshops, the community of informaticians, medical imaging researchers, and clinical collaborators who are helping  ... 
doi:10.15265/iy-2017-041 pmid:29063549 pmcid:PMC6250996 fatcat:ktdiwnamzbat7emfmfz2ddq3py

A narrative review of digital pathology and artificial intelligence: focusing on lung cancer

Taro Sakamoto, Tomoi Furukawa, Kris Lami, Hoa Hoang Ngoc Pham, Wataru Uegami, Kishio Kuroda, Masataka Kawai, Hidenori Sakanashi, Lee Alex Donald Cooper, Andrey Bychkov, Junya Fukuoka
2020 Translational Lung Cancer Research  
Through practice and research large archival databases of digital pathology images have been developed that will facilitate the development of artificial intelligence (AI) methods for image analysis.  ...  The emergence of whole slide imaging technology allows for pathology diagnosis on a computer screen.  ...  U24CA19436201, U01CA220401 and National Institute of Biomedical Imaging and Bioengineering U01CA220401.  ... 
doi:10.21037/tlcr-20-591 fatcat:xzyj6ly2hzbhlepzl4nfliwncy
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