A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Filters
Developing and accessing scientific databases with the Object-Protocol Model (OPM) data management tools
Proceedings. Ninth International Conference on Scientific and Statistical Database Management (Cat. No.97TB100150)
Preserved Fulltext
The Object-Protocol Model (OPM) data management tools provide facilities for rapid development, documentation, and flexible exploration of scientific databases. ...
The tools are based on OPM, an object-oriented data model which is similar to the ODMG standard, but also supports extensions for modeling scientific data [41. ...
This work is supported by the Office of Health and Environmental Research Program and the Mathematical, Information, and Computational Sciences Division of the Office of Energy Research , U.S. ...
doi:10.1109/ssdm.1997.621167
dblp:conf/ssdbm/ChenKMS97
fatcat:tuy2jevelzamjgofxodu7fowpi
Storing, reasoning, and querying OPM-compliant scientific workflow provenance using relational databases
2011
Future generations computer systems
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
In this paper, we present OPMProv, a relational database-based scientific workflow provenance system, that is fully compliant with OPM (v1.01). ...
Our main contributions are: i) we design an entity-relationship diagram for OPM and translate it into a relational database schema for the storage of provenance; ii) we propose an efficient data mapping ...
Acknowledgments The authors would like to thank Girish Subramanian from Indiana University for helping us set up the provenance database of Karma. ...
doi:10.1016/j.future.2010.10.013
fatcat:mdzm4lhc7fcmpir6xxvvnb4nvm
OPM: Object-Protocol Model Data Management Tools '97
[chapter]
Bioinformatics: Databases and Systems
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2016; you can also visit the original URL.
The file type is application/pdf.
Acknowledgments Between 1992 and 1997, the OPM tool development was carried out in the framework of the Data Management R&D Group at Lawrence Berkeley National Laboratory (LBNL), with funding provided ...
We want to thank Arie Shoshani, the head of the Data Management R&D Group at LBNL, for his active support and encouragement.
References ...
Introduction The development of the Object-Protocol Model (OPM) and OPM data management tools started in 1992. ...
doi:10.1007/0-306-46903-0_17
fatcat:5ofpjazozrf53n76cnoadqp2na
Cézeaux-Aulnat-Opme-Puy De Dôme: a multi-site for the long-term survey of the tropospheric composition and climate change
2020
Atmospheric Measurement Techniques
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
It is also an ideal place to study cloud properties with frequent presence of clouds at the top in fall and winter. ...
The site located on top of the puy de Dôme mountain (1465 m a.s.l.) is completed by additional sites located at lower altitudes and adding the vertical dimension to the atmospheric observations: Opme ( ...
We thank all the people who contributed to the functioning and development of the instrumented site CO-PDD without being a co-author of this article. . 654109) ). ...
doi:10.5194/amt-13-3413-2020
fatcat:brklxmldobbqdbsy2cxxkdsrcy
3DBase – a macromolecular structure database
1996
Acta Crystallographica Section A Foundations of Crystallography
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The PDB is supported by a combination of Federal Government Agency funds and user fees. Support is provided by the U.S. National Science Foundation, the U.S. ...
National Institutes of General Medical Sciences, National Library of Medicine, and the U.S. Department of Energy under contract DE-AC02-76CHOOO 16. ...
DBMS and the Object Protocol Model (OPM) and OPM data management tools developed by Victor Markowitz's group at Lawrence Berkeley National Laboratory. ...
doi:10.1107/s0108767396076180
fatcat:fwjwpe35kjhxbm2shxxj7uwwlq
Protein Data Bank – where we are today
1996
Acta Crystallographica Section A Foundations of Crystallography
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The PDB is supported by a combination of Federal Government Agency funds and user fees. Support is provided by the U.S. National Science Foundation, the U.S. ...
National Institutes of General Medical Sciences, National Library of Medicine, and the U.S. Department of Energy under contract DE-AC02-76CHOOO 16. ...
DBMS and the Object Protocol Model (OPM) and OPM data management tools developed by Victor Markowitz's group at Lawrence Berkeley National Laboratory. ...
doi:10.1107/s0108767396076179
fatcat:ns2x6m7rmfamhebfymfui6vml4
Advanced query mechanisms for biological databases
1998
Proceedings. International Conference on Intelligent Systems for Molecular Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2015; you can also visit the original URL.
The file type is application/pdf.
, and notations, in the framework of the Object-Protocol Model (OPM). ...
These tools avoid the restrictions imposed by traditional fixed-form query interfaces, while providing users with simple and intuitive facilities for formulating ad-hoc queries across heterogeneous databases ...
The work presented in this paper was carried out while the authors were affiliated with the Lawrence Berkeley National Laboratory, with support provided by the Office of Health and Environmental Research ...
pmid:9783208
fatcat:r4phgte7lvcczlgynn6ekvoknu
The Protein Data Bank: Current status and future challenges
1996
Journal of Research of the National Institute of Standards and Technology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2013; you can also visit the original URL.
The file type is application/pdf.
The PDB is now being transformed into 3DB, the Three-Dimensional Database of Biomacromolecular Structures, with significantly enhanced capabilities. ...
The Protein Data Bank (PDB) is an archive of experimentally determined, three-dimensional structures of proteins, nucleic acids, and other biological macromolecules. ...
for 3DB The 3DBase is constructed with the SYBASE RDBMS, the Object-Protocol Model (OPM), and the OPM data management tools [14] developed by Victor Markowitz's group at Lawrence Berkeley National Laboratory ...
doi:10.6028/jres.101.025
pmid:27805161
pmcid:PMC4963140
fatcat:l6jpapo5kbci7cebtchogylvoi
Using Provenance to support Good Laboratory Practice in Grid Environments
[article]
2011
arXiv
pre-print
Preserved Fulltext
The Internet Archive has a preservation copy of this work in our general collections.
The file type is application/pdf.
As a new approach to this, a scientific data management system (DataFinder) is enhanced with features for traceable documentation. ...
Due to computerised research systems, acquired data became more elaborate, thus increasing the need for electronic notebooks with data storage, computational features and reliable electronic documentation ...
To overcome this situation common in many research institutes, the DLR facility Simulation and Software Technology has developed the scientific data management system DataFinder (cf. [20] ). ...
arXiv:1112.3062v1
fatcat:whvr52ouqzdsbmi3ap6nrthxga
DataFoundry: information management for scientific data
2000
IEEE Transactions on Information Technology in Biomedicine
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2011; you can also visit the original URL.
The file type is application/pdf.
First, schema integration is more difficult for scientific databases than for business sources, because of the complexity of the concepts and the associated relationships. ...
They have proven to be invaluable tools by integrating information from distributed, heterogeneous sources and summarizing this data for use throughout the enterprise. ...
The Object Protocol Model (OPM) [6] , developed at Lawrence Berkeley National Laboratory, provides a set of tools for scientific data management. ...
doi:10.1109/4233.826859
pmid:10761774
fatcat:c5xfzvai65gzxmhjxptxj65mfe
Research Traceability using Provenance Services for Biomedical Analysis
[article]
2014
arXiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
We outline the approach being developed in the neuGRID project to use provenance management techniques for the purposes of capturing and preserving the provenance data that emerges in the specification ...
approach for provenance management could emerge for more generic application to the (Health)Grid community. ...
The OPM also enables developers to develop and share tools that work across systems. To implement OPM compliance, there are essentially three steps: Describe an application specific schema. ...
arXiv:1403.0230v1
fatcat:xfhuf4mghvakfl4cyhkc5mjxm4
Embedding Data within Knowledge Spaces
[article]
2009
arXiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
We have developed the open-source Tupelo semantic content management framework and are employing it to manage a wide range of e-Science entities (including data, documents, workflows, people, and projects ...
The promise of e-Science will only be realized when data is discoverable, accessible, and comprehensible within distributed teams, across disciplines, and over the long-term--without reliance on out-of-band ...
Any opinions, findings, and conclusions or recommendations expressed in this publication are those of the author(s) and do not necessarily reflect the views of NSF and ONR. ...
arXiv:0902.0744v1
fatcat:adkv7fvkvbfctnnntzsjsy4i5q
Research Traceability using Provenance Services for Biomedical Analysis
[article]
2012
arXiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
We outline the approach being developed in the neuGRID project to use provenance management techniques for the purposes of capturing and preserving the provenance data that emerges in the specification ...
approach for provenance management could emerge for more generic application to the (Health)Grid community. ...
The OPM also enables developers to develop and share tools that work across systems. To implement OPM compliance, there are essentially three steps: Describe an application specific schema. ...
arXiv:1202.5517v1
fatcat:zhkhowd2pzccdjwkx56ts6emli
Experiences applying meta-data to bioinformatics
2001
Information Sciences
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2010; you can also visit the original URL.
The file type is application/pdf.
Other Approaches The Object Protocol Model (OPM) [5] , developed at Lawrence Berkeley National Laboratory and licensed by Gene Logic Corp., provides a set of tools for scientific data management. ...
The OPM tool-set consists of a schema editor, for specifying and managing OPM schemata; a graphical querying and browsing tool; and tools for conversion between relational and OPM schema so OPM can access ...
Work performed under the auspices of the U.S. DOE by LLNL under contract No. W-7405-ENG-48 . UCRL-JC-139907 ...
doi:10.1016/s0020-0255(01)00155-4
fatcat:hjhmsnuivbayxpev7ukuvde6xq
The KBMS Project and Beyond
[chapter]
2009
Lecture Notes in Computer Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2011; you can also visit the original URL.
The file type is application/pdf.
The objects with a spatial extension can be placed in spaces, called maps, at variable scales and related to other spatial objects or constants through qualitative or quantitative relationships. ...
rule management, and concurrency control. ...
The OPM Tools Suite: The Object Protocol Model (OPM) project [53] at the Lawrence Berkeley National Laboratory utilizes a semantic data model to describe the semantics of the entities in biological databases ...
doi:10.1007/978-3-642-02463-4_24
fatcat:6wrere4quvgcdafnpoh5c7broy
« Previous
Showing results 1 — 15 out of 431 results