The Internet Archive has a preservation copy of this work in our general collections.
The file type is application/pdf.
Filters
Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes
2011
BMC Systems Biology
Preserved Fulltext
Results: In this study, extensive novel roles of 14-3-3 proteins in plant metabolism were determined through combining the parallel analyses of metabolites and enzyme activities in 14-3-3 overexpression ...
In plants, 14-3-3 proteins have major roles as regulators of nitrogen and carbon metabolism, conclusions based on the studies of a few specific 14-3-3 targets. ...
In this study, we provide a novel functional link between 14-3-3 proteins and TCA cycle. ...
doi:10.1186/1752-0509-5-192
pmid:22104211
pmcid:PMC3253775
fatcat:ozvzkt3bprecrc36ewgpevuq3y
Novel links in the plant TOR kinase signaling network
2015
Current opinion in plant biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The target of rapamycin (TOR) protein kinase is modulated by diverse nutrient, energy, hormone and stress inputs and plays a central role in regulating cell proliferation, growth, metabolism and stress ...
This review discusses the applications of new chemical tools to probe plant TOR functions and highlights recent findings and predictions on TOR-mediate biological processes. ...
Y.X. is supported by Chinese Academy of Sciences. ...
doi:10.1016/j.pbi.2015.09.006
pmid:26476687
pmcid:PMC4612364
fatcat:qpmvu4g6izetxodhd7mkm3wv5u
A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis
2013
Journal of Proteomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Gene ontology and pathway analyses revealed that many of the new identified phosphoproteins are important regulatory proteins that are involved in diverse biological processes, particularly in central ...
Taken together, our results provided not only new insights into the complex phosphoregulatory network in plants but also important resources for future functional studies of protein phosphorylation in ...
by 14-3-3 proteins. ...
doi:10.1016/j.jprot.2012.10.018
pmid:23111157
fatcat:xiwpojsxbjdlxinjvh5ewjmm2e
Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings
2019
Proteomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Additionally, functional categorization of these auxin responsive proteins indicates that rapid and complex metabolic changes occur in seedlings in response to auxin, including lipid metabolism. ...
Approximately 25% of the detected proteins (1045 out of 4257 proteins) are auxin responsive, which is in line with the central role of auxin in the regulation of plant growth and development. ...
These datasets provide a rich resource for mining novel protein function. ...
doi:10.1002/pmic.201900199
pmid:31381813
fatcat:ekxwun5byfd53jxqzcb5zvxizm
Experimental Analysis of the Arabidopsis Mitochondrial Proteome Highlights Signaling and Regulatory Components, Provides Assessment of Targeting Prediction Programs, and Indicates Plant-Specific Mitochondrial Proteins
2004
The Plant Cell
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
These show a clear set of putative cross-species orthologs in the core metabolic functions of mitochondria, whereas considerable diversity exists in many signaling and regulatory functions. ...
Nearly 20% of the experimentally identified proteins are of unknown function, suggesting a wealth of undiscovered mitochondrial functions in plants. ...
processing
2
2
7
9
9 (2%)
Transcription
1
0
7
7
8 (2%)
RNA processing
3
3
11
14
14 (3%)
Protein synthesis
4
3
11
14
15 (4%)
Defense, stress, detoxification
8
6
8
14
16 (4% ...
doi:10.1105/tpc.016055
pmid:14671022
pmcid:PMC301408
fatcat:6aihjhc7k5hy5keq7psi5xd5wy
Identification of AUXIN RESPONSE FACTOR gene family from Prunus sibirica and its expression analysis during mesocarp and kernel development
2018
BMC Plant Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
To our knowledge, the comprehensive and systematic characterization of ARF genes has never been reported in Prunus sibirica, a novel woody biodiesel feedstock in China. ...
Auxin response factors (ARFs) in auxin signaling pathway are an important component that can regulate the transcription of auxin-responsive genes involved in almost all aspects of plant growth and development ...
These funding agencies had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript. ...
doi:10.1186/s12870-017-1220-2
pmid:29368590
pmcid:PMC5784662
fatcat:e7wqxycprbcd7jsbiksma34mmi
Dynamic and diverse sugar signaling
2016
Current opinion in plant biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Comparative transcriptome analyses highlight the primary and dynamic sugar responses and reveal the convergent and specific regulators of key biological processes in the sugar-signaling network. ...
Direct sensing and signaling is triggered via sugar-binding sensors with a broad range of affinity and specificity, whereas sugar-derived bioenergetic molecules and metabolites modulate signaling proteins ...
Acknowledgements We thank Matthew McCormack for guidance in transcriptom analyses. ...
doi:10.1016/j.pbi.2016.06.018
pmid:27423125
pmcid:PMC5050104
fatcat:xqk6lykt2vca3oqn4knxvxka7y
Expression-based network biology identifies immune-related functional modules involved in plant defense
2014
BMC Genomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Gene Ontology (GO) enrichment analyses provided insight into the key biological processes involved in determining finely tuned immune responses. ...
We also developed novel software called OCCEAN (One Click Cis-regulatory Elements ANalysis) to discover statistically enriched promoter elements in the upstream regulatory regions of Arabidopsis at a whole ...
Jessica Lopez for critical reading of the manuscript and valuable suggestions. ...
doi:10.1186/1471-2164-15-421
pmid:24888606
pmcid:PMC4070563
fatcat:iobt6d2cy5gffinu7isv6c3ele
14-3-3 Proteins, red light, and photoperiodic flowering
2008
Plant Signalling & Behavior
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
confounding issues in the functional dissection of this family of signaling proteins. ...
This review presents an overview of photoperiodic flowering signaling and direct 14-3-3 participation in the process, coupled with a discussion of the overlapping and specific roles of 14-3-3s which present ...
Examination of a larger set of 14-3-3 isoforms may better define the roles of 14-3-3 isofoms in this process. ...
doi:10.4161/psb.3.8.5717
pmid:19513242
pmcid:PMC2634483
fatcat:45ka4ji7wjbs7agfufq4ufwxb4
A Proteomic Analysis of Seed Development in Brassica campestri L
2012
PLoS ONE
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Our results revealed novel characters of protein dynamics in seed development in Brassica campestri L. and provided valuable information about the complex process of seed development in plants. ...
Besides, the high amount of proteins involved in protein processing and destination indicated importance of protein renewal during seed development. ...
Therefore, identification of AKT2/3 suggested its novel role in seed development. ...
doi:10.1371/journal.pone.0050290
pmid:23189193
pmcid:PMC3506616
fatcat:7f7tuaf6bnch3b5g4ylxhyfqo4
D-Amino Acids in Plants: New Insights and Aspects, but also More Open Questions
[chapter]
2017
Amino Acid - New Insights and Roles in Plant and Animal
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Investigations of plant D-amino acid metabolism as well as other studies revealed a central function of D-Ala in plants, which await further elucidation. ...
for a variety of yet poorly understood or even undiscovered functions in plants. ...
Studies of Juan Suarez on the effects of D-AAs on Arabidopsis were supported by the DeutscherAkademischerAustauschdienst (DAAD 91567028). ...
doi:10.5772/intechopen.68539
fatcat:dpce6ofxlfbsjhlwha65fpvwzm
The Sugar-Signaling Hub: Overview of Regulators and Interaction with the Hormonal and Metabolic Network
2018
International Journal of Molecular Sciences
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
acting in the interplay of the sugar-hormone and sugar-nitrogen networks. ...
Their optimization requires the integration of signals conveying the plant metabolic status, its hormonal balance, and its developmental stage. ...
Conflicts of Interest: The authors declare no conflict of interest. ...
doi:10.3390/ijms19092506
pmid:30149541
fatcat:fhrtxliwgrfvdg7q5ngeaun364
RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis
2016
Virology Journal
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Functional annotation indicated that these DEGs were related to multiple biological functions, including defense response, secondary metabolism, protein amino acid phosphorylation and response to abiotic ...
However, our knowledge of the response of Arabidopsis plants to RSV infection is limited, and it requires further investigation to determine the similarities (or differences) in virus-host interactions ...
Western blotting To determine RSV CP protein accumulation in Arabidopsis plants, RSV-infected Arabidopsis total proteins were extracted from 0.1 g of ground plant material in 200 μl of 2 × SDS-loading ...
doi:10.1186/s12985-016-0663-7
pmid:27912765
pmcid:PMC5134058
fatcat:3k7js3bqmfewbjnxzdemziiv64
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
2013
BMC Genomics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Results: In this work, we employed the Illumina high throughput sequencing technology to perform an integrated analysis of the poly-A + enriched and the small RNA fractions of the Arabidopsis thaliana ...
miRNA/TARGET module consisting of a novel microRNA, miR5640 and its target, AtPPC3. ...
Although there has been an extensive biochemical characterization of the AtPPCs enzymes in Arabidopsis, there are no reports of their function in N metabolism. ...
doi:10.1186/1471-2164-14-701
pmid:24119003
pmcid:PMC3906980
fatcat:3k24xl6tdvgmnaigrpwxutps2a
Posttranscriptional control of plant development
2004
Current opinion in plant biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Although some of these proteins belong to core RNA metabolic machineries, others may have more specialized cellular functions. ...
Genetic studies have provided increasing evidence that proteins involved in all aspects of RNA metabolism, such as RNA processing, transport, stability, and translation, are required for plant development ...
Mol Cell. 1999; 3:349-360. [PubMed: 10198637] 30. Chen X, Liu J, Cheng Y, Jia D. HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower. ...
doi:10.1016/j.pbi.2003.11.005
pmid:14732437
pmcid:PMC5125221
fatcat:fsojv2lqrzgavd2a53fmee7a5y
« Previous
Showing results 1 — 15 out of 12,994 results