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BLUSNO: A System for Orientation, Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks

Christopher Ochs, Yehoshua Perl, James Geller
2013 International Conference on Biomedical Ontology  
Compact networks called abstraction networks can be derived to summarize the content and structure of ontologies and support their quality assurance.  ...  Their size and complexity make quality assurance a difficult and timeconsuming task.  ...  ACKNOWLEGEMENTS Development of BLUSNO was partially supported by NIH ARRA grant R01 LM008912-S2.  ... 
dblp:conf/icbo/OchsPG13 fatcat:trihdboh75eubf5ijxkvascmv4

A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies

Christopher Ochs, James Geller, Yehoshua Perl, Mark A. Musen
2016 Journal of Biomedical Informatics  
One kind of abstraction network that we have used repeatedly to support ontology quality assurance is the partial-area taxonomy.  ...  In previous work, we have introduced different kinds of abstraction networks to provide a theoretical foundation for ontology quality assurance tools.  ...  Acknowledgments Research reported in this publication was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01CA190779.  ... 
doi:10.1016/j.jbi.2016.06.008 pmid:27345947 pmcid:PMC4987206 fatcat:aetz22yux5aftoxywhu4x44gzi

A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal

Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitris Zeginis, Konstantinos Tarabanis, Gai Elhanan, Michael Halper, Natasha Noy, James Geller
2013 AMIA Annual Symposium Proceedings  
Abstraction networks (ANs), compact summarizations of ontology structure and content, have been used in such QA efforts, typically in a "one-off" manner for a single ontology.  ...  To increase efficiency, a new family-based QA framework is introduced in which an automated, uniform AN derivation technique and accompanying semi-automated, uniform QA regimen are applicable to the ontologies  ...  Using this family information, we were able to derive abstraction networks for whole families of ontologies, enabling a uniform quality assurance methodology for these similar ontologies.  ... 
pmid:24551360 pmcid:PMC3900201 fatcat:fuh2irzsm5gcdfxeungy7kdcsa

Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology

Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, Michael Halper, James Geller
2013 International Conference on Biomedical Ontology  
Abstraction networks have been shown to support orientation into and quality assurance of ontologies.  ...  An abstraction network is a compact network summarizing the structure and content of a given ontology.  ...  ACKNOWLEDGMENTS We would like to thank Drs. Natasha Noy and Mark Musen of the NCBO for their continued guidance.  ... 
dblp:conf/icbo/Ochs0PAHG13 fatcat:agxivgx56zdatldg4s4grdv6ea

Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network

Christopher Ochs, Yehoshua Perl, James Geller, Melissa Haendel, Matthew Brush, Sivaram Arabandi, Samson Tu
2015 Journal of Biomedical Informatics  
Abstraction networks, which provide compact summaries of an ontology's content and structure, have been used to uncover structural irregularities, inconsistencies and errors in ontologies.  ...  In this paper, we introduce Diff Abstraction Networks ("Diff AbNs"), compact networks that summarize and visualize global structural changes due to ontology editing operations that result in a new ontology  ...  Research reported in this publication was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01CA190779.  ... 
doi:10.1016/j.jbi.2015.05.018 pmid:26048076 pmcid:PMC4532611 fatcat:v6ewyvfolndojldseseyg3aluq

Page 32 of Library & Information Science Abstracts Vol. , Issue 2 [page]

1992 Library & Information Science Abstracts  
Offers an innovative solution derived form the findings to effectively tag library holdings onto GPO tapes without labour-intensive manual verification of all titles matched.  ...  Outlines projects supported and considers the practical side of the application process and the formulation of the grant. Discusses criteria used to evaluate the quality of a project.  ... 

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities

Muhammad Amith, Zhe He, Jiang Bian, Juan Antonio Lossio-Ventura, Cui Tao
2018 Journal of Biomedical Informatics  
Abstraction-network-based approaches-Biomedical ontologies are often large and complex. Abstraction networks overlay an ontology's underlying network structure at a higher level of abstraction [67] .  ...  They can summarize the structure and content of the ontologies to support their quality assurance [67] .  ...  By reviewing the literature, we found that quality assurance and auditing appear to be mostly conducted by third parties as an additional mechanism to support the maintenance of an ontology.  ... 
doi:10.1016/j.jbi.2018.02.010 pmid:29462669 pmcid:PMC5882531 fatcat:aear352mcvhgxnzub53cgcjoaa

The Role of the National and University Library of Slovenia in a Multinational Research Project (IMPACT): a Case Study

Ines Vodopivec
2012 Liber Quarterly: The Journal of European Research Libraries  
and University Library of Slovenia (NUK) as a partner in the IMPACT project -Improving Access to Text.  ...  It also shows, that national libraries can be important and active partners not only in an applicative, but also in scientific research project consortia.  ...  (but not limited to) by assuring all users good-quality, state-of-the-art internet support and widely accessible resources and services which are in the public interest (Strategija, 2006, p. 26-40) .  ... 
doi:10.18352/lq.8030 fatcat:tszyce4qwrgxlbrbe7l2y34qla

Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology

Zhe He, Christopher Ochs, Larisa N. Soldatova, Yehoshua Perl, Sivaram Arabandi, James Geller
2013 International Conference on Biomedical Ontology  
One methodology proven to support quality assurance is based on automatic derivation of abstraction networks (ANs) from the original ontologies.  ...  Quality assurance is an important process in the development of ontologies.  ...  ACKNOWLEDGMENTS This work has been partially supported by the BRIEF award, Brunel University, London. We thank Natasha Noy of NCBO for her help.  ... 
dblp:conf/icbo/0001OSPAG13 fatcat:szyqz5cxl5hatcuqd6w4ofn464

Building Organisation-Community Relationships in Co-Creative Social Networking Platforms: An Ecological Systems Perspective [chapter]

Kyeong Kang, Fatuma Namisango
2021 E-Service [Working Title]  
We used the ecological systems perspective to identify the internal and external environmental influences on organisational relationships in social networking platforms.  ...  Nonprofit organisations use social networking platforms to interact, engage, and build productive relationships with target audiences for co-created outcomes.  ...  This study proposes an OCR analysis, particularly in CoSNPs, driven by an ecological systems assessment.  ... 
doi:10.5772/intechopen.99732 fatcat:uvt2j2cz6vfk3igfyfanvhfxky

Clinical research informatics: a conceptual perspective

M. G. Kahn, C. Weng
2012 JAMIA Journal of the American Medical Informatics Association  
Paralleling the growth in CRI prominence, JAMIA has received an increasing number of CRI submissions.  ...  In 2010, five published articles were completely focused on CRI, 10e14 while in 2011 this number rose to 23, 15e37 accounting for 11.5% of all JAMIA articles for that year.  ...  Rasmussen's results show that the OCR pipeline significantly reduces human effort on chart abstraction.  ... 
doi:10.1136/amiajnl-2012-000968 pmid:22523344 pmcid:PMC3392857 fatcat:5zg7tavwubh4bpowo563pcn5ja

Archival quality and long-term preservation: a research framework for validating the usefulness of digital surrogates

Paul Conway
2011 Archival Science  
It outlines a research project that is designed to develop and test measures of quality for digital content preserved in HathiTrust, a large-scale preservation repository.  ...  In situations where digital content has been created by third-party firms, content quality (or its absence in the form of unacceptable error) may directly influence repository trustworthiness.  ...  errors from optical character recognition (OCR) routines, and errors that apply to an entire volume.  ... 
doi:10.1007/s10502-011-9155-0 fatcat:236mrshj4vb7znnvayom5bqedu

Visualizing the "Big Picture" of Change in NCIt's Biological Processes

Yehoshua Perl, Christopher Ochs, Sherri de Coronado, Nicole Thomas
2016 International Conference on Biomedical Ontology  
In this paper we describe a methodology and tool using diff partial-area taxonomies to visually summarize structural changes between two NCIt releases.  ...  Tracking structural changes in NCIt is important for the editors of its content.  ...  ACKNOWLEDGMENTS Research reported in this publication was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01CA190779.  ... 
dblp:conf/icbo/PerlOCT16 fatcat:aqgjqgupjfcavblrrlnv5ypugy

A Large Scale Code Resolution Service Network in the Internet of Things

Haining Yu, Hongli Zhang, Binxing Fang, Xiangzhan Yu
2012 Sensors  
For the internal behaviors of SkipNet-OCRS, an improved query algorithm is proposed to increase query efficiency.  ...  A code resolution service network is required to address these issues. Firstly, a list of requirements for the network architecture and code resolution services is proposed.  ...  Acknowledgments This research is partly supported by the National Science & Technology Pillar Program (Grant No.  ... 
doi:10.3390/s121115206 pmid:23202207 pmcid:PMC3522960 fatcat:k5i5ng5aznhb5khgnehnicak4m

Making Europe's Historical Newspapers Searchable

Clemens Neudecker, Apostolos Antonacopoulos
2016 2016 12th IAPR Workshop on Document Analysis Systems (DAS)  
It explains what decisions were taken in the design of the large-scale processing workflow to address these challenges, what were the results produced and what were identified as best practices.  ...  After introducing the background issues in newspaper digitization in Europe, the paper discusses the technical aspects of refinement in greater detail.  ...  quality assurance by CCS, thus allowing them to at least sample the quality, perform some manual corrections and understand the importance of good raw material for optimal automatic results.  ... 
doi:10.1109/das.2016.83 dblp:conf/das/NeudeckerA16 fatcat:3y7s5lkq6bfptp2hbsl6qsrp4e
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