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A drawback of de novo peptide sequencing is that it produces a series of ordered and disordered sequence tags and mass tags rather than a complete, non-degenerate peptide amino acid sequence. ... De novo peptide sequencing is an approach to determine partial peptide sequences for some of the unidentified spectra. ... Funding to pay the Open Access publication charges for this article was provided by the Biotechnology and Bioengineering Center at the Medical College of Wisconsin. ...doi:10.1093/nar/gki461 pmid:15980493 pmcid:PMC1160222 fatcat:gm5tap7vlrf5vizc7w5ii3ngru