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Data sharing in neuroimaging research

Jean-Baptiste Poline, Janis L. Breeze, Satrajit Ghosh, Krzysztof Gorgolewski, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Karl G. Helmer, David B. Keator, Daniel S. Marcus, Russell A. Poldrack, Yannick Schwartz (+2 others)
2012 Frontiers in Neuroinformatics  
Many researchers and institutions remain uncertain about how to share data or lack the tools and expertise to participate in data sharing.  ...  By providing seamless integration of data sharing and analysis tools within a commodity research environment, the Task Force seeks to identify and minimize barriers to data sharing in the field of neuroimaging  ...  SOME DATA ARE SHARED Much more interest in data sharing is evident in the neuroimaging community compared to just a few years ago, as a new generation of researchers recognizes its importance and utility  ... 
doi:10.3389/fninf.2012.00009 pmid:22493576 pmcid:PMC3319918 fatcat:f4cgaldeuraavmcnxqrsisdebe

Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers [article]

John A. Borghi, Ana E. Van Gulick
2018 bioRxiv   pre-print
Neuroimaging methods such as magnetic resonance imaging (MRI) involve complex data collection and analysis protocols, which necessitate the establishment of good research data management (RDM).  ...  Our results demonstrate that neuroimaging data is acquired in multifarious forms, transformed and analyzed using a wide variety of software tools, and that RDM practices and perceptions vary considerably  ...  While conducting the work described in this publication, J.B. was funded as both a CLIR Software Curation Fellow (Alfred P. Sloan Foundation #G-2015-14112) and an RDA Data Share Fellow (Alfred P.  ... 
doi:10.1101/266627 fatcat:yux5zf3dsffxjfxl3plbpamvta

Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers

John A. Borghi, Ana E. Van Gulick, Dzung Pham
2018 PLoS ONE  
OPEN ACCESS Citation: Borghi JA, Van Gulick AE (2018) Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers. PLoS ONE 13(7): e0200562. https://doi.org/ 10.  ...  Neuroimaging methods such as magnetic resonance imaging (MRI) involve complex data collection and analysis protocols, which necessitate the establishment of good research data management (RDM).  ...  Acknowledgments The authors would like to thank Yael Isler and John Pyles for their helpful comments throughout the research process and J.B.  ... 
doi:10.1371/journal.pone.0200562 pmid:30011302 pmcid:PMC6047789 fatcat:56gz4ltzpfcsbldeidcyuqu6xa

Data sharing and privacy issues in neuroimaging research: Opportunities, obstacles, challenges, and monsters under the bed

Tonya White, Elisabet Blok, Vince D. Calhoun
2020 Human Brain Mapping  
Importantly, we highlight the intersection of data sharing, privacy, and data ownership and highlight specific examples that we believe are informative to the neuroimaging community.  ...  These initiatives offer greater transparency in science, with the opportunity for external research groups to reproduce, replicate, and extend research findings.  ...  Within human subjects research, large data sharing or data pooling initiatives have been especially prominent in the fields of genetics, neuroimaging, and the combination of the two (Poldrack & Gorgolewski  ... 
doi:10.1002/hbm.25120 pmid:32621651 pmcid:PMC8675413 fatcat:me454yhwh5g75kqfimdnktgwnm

Data Sharing in Alzheimer's Disease Research

Arthur W Toga, University of Southern California (USC) Mark and Mary Stevens Neuroimaging and Informatics Institute, Los Angeles, CA, US
2018 US Neurology  
What are the major initiatives for data sharing in Alzheimer's disease research, and who can access these data?  ...  While many researchers recognize the importance of data sharing, they often lack the capability to share it.  ...  What are the major initiatives for data sharing in Alzheimer's disease research, and who can access these data?  ... 
doi:10.17925/usn.2018.14.2.68 fatcat:hkqf6wd7sbh2ze2e7yfmc5za5q

Sharing Voxelwise Neuroimaging Results from Rhesus Monkeys and Other Species with Neurovault

AS Fox, D Holley, PC Klink, SA Arbuckle, C Barnes, J Diedrichsen, SC Kwok, C Kyle, JA Pruszynski, J Seidlitz, X-F Zhou, RA Poldrack (+1 others)
2020 NeuroImage  
Together, these advances promise to bring neuroimaging data sharing to research in other species, for supplemental data, location-based atlases, and data that would otherwise be relegated to a "file-drawer  ...  Neurovault, which was previously limited to human neuroimaging data, now allows researchers to easily upload and share nonhuman primate neuroimaging results.  ...  Data and code availability All data and code is freely available online. Data is available on Neurovault.org, through the links provided in the manuscript.  ... 
doi:10.1016/j.neuroimage.2020.117518 pmid:33137472 pmcid:PMC7846271 fatcat:jc43zljvnneglifxhfreo4oqzi

Data sharing and publishing in the field of neuroimaging

Janis L Breeze, Jean-Baptiste Poline, David N Kennedy
2012 GigaScience  
There is growing recognition of the importance of data sharing in the neurosciences, and in particular in the field of neuroimaging research, in order to best make use of the volumes of human subject data  ...  Finally, issues of human research subject protections and the ethical use of such data are an ongoing source of concern for neuroimaging researchers.  ...  Background With the worldwide push for more open science and data sharing [1] , it is an ideal time to consider the current state of data sharing in neuroscience, and in particular neuroimaging research  ... 
doi:10.1186/2047-217x-1-9 pmid:23587272 pmcid:PMC3626511 fatcat:go62f6mnhfcdvab7nygx5kwigu

Electronic Data Capture, Representation, and Applications for Neuroimaging

Jessica A. Turner, John Darrell Van Horn
2012 Frontiers in Neuroinformatics  
practical applications in neuroimaging research and related studies.  ...  (this issue) for neuroimaging data sharing).  ... 
doi:10.3389/fninf.2012.00016 pmid:22586393 pmcid:PMC3345526 fatcat:g3wzyphutzbwtith34majxdzgm

INCloud: integrated neuroimaging cloud for data collection, management, analysis and clinical translations

Qingfeng Li, Lijuan Jiang, Kaini Qiao, Yang Hu, Bing Chen, Xiaochen Zhang, Yue Ding, Zhi Yang, Chunbo Li
2021 General Psychiatry  
Rapidly growing neuroimaging research generates massive amounts of data, bringing new challenges in data collection, large-scale data management, efficient computing requirements and data mining and analyses.AimsTo  ...  data management and sharing, reduced technical requirements for researchers, high-efficiency computing and data mining, and straightforward translations to clinical service.  ...  Acknowledgements We acknowledge all members of the Psychiatric Imaging Consortium for sharing data; Shanghai Qianhu Technology Co., Ltd. provided technical assistance for the realisation of INCloud.  ... 
doi:10.1136/gpsych-2021-100651 pmid:35028522 pmcid:PMC8705204 fatcat:7wg3rubupvh7zikqm7nkvxl7sa

Reproducibility Begins At Home: Surveying Data Management Practices In Neuroimaging

John Borghi, Ana Van Gulick
2018 Zenodo  
Poster describing the results of a survey project investigating data management practices among neuroimaging researchers.  ...  Surveying Data Management Practices in Neuroimaging A total of 144 neuroimaging researchers participated in our survey.  ...  Because of the cost and complexity of the materials involved, effective research data management (RDM) is essential in human brain imaging (neuroimaging) research.  ... 
doi:10.5281/zenodo.1204807 fatcat:thozhokambbkznex3fg6ik6gdy

Meeting Curation Challenges in a Neuroimaging Group

Angus Whyte, Dominic Job, Stephen Giles, Stephen Lawrie
2008 International Journal of Digital Curation  
The study briefly reviews the policy context and current challenges to data integration and sharing in the neuroimaging field.  ...  These sustain mutual awareness of datasets and experimental protocols through sharing peer to peer, and among senior researchers and students, enabling continuity in research and flexibility in project  ...  Acknowledgements The study would not have been possible without the generosity and patience of colleagues in the Neuroimaging Group, Division of Psychiatry, University of Edinburgh.  ... 
doi:10.2218/ijdc.v3i1.53 fatcat:l5dgxmj52vdwnhstvs4p27tauu

Computational and informatics advances for reproducible data analysis in neuroimaging [article]

Russell A. Poldrack, Krzysztof J. Gorgolewski, Gael Varoquaux
2018 arXiv   pre-print
We discuss the range of open data sharing resources that have been developed for neuroimaging data, and the role of data standards (particularly the Brain Imaging Data Structure) in enabling the automated  ...  sharing, processing, and reuse of large neuroimaging datasets.  ...  Data sharing in neuroimaging Data sharing practices vary remarkably across research fields, due to a combination of social and technical factors.  ... 
arXiv:1809.10024v1 fatcat:pfosfxzhfrbctb5363p7plxppy

Editorial: MAPPING: MAnagement and Processing of Images for Population ImagiNG

Michel Dojat, David N. Kennedy, Wiro Niessen
2017 Frontiers in ICT  
If we share data, will anyone use them? Data sharing and reuse in the long tail of science and technology.  ...  In population imaging, this would mean providing effective tools for data sharing and analysis without increasing the burden on researchers.  ... 
doi:10.3389/fict.2017.00018 fatcat:svvyijjih5bhhdk3pofz7az5ye

Survey on Open Science Practices in Functional Neuroimaging [article]

Christian Paret, Nike Unverhau, Franklin Feingold, Russell A. Poldrack, Madita Stirner, Christian Schmahl, Maurizio Sicorello
2021 bioRxiv   pre-print
The majority of participants had experience with the sharing of primary neuroimaging data.  ...  Preregistration of the hypotheses and methods of an empirical study before analysis, the sharing of primary research data, and compliance with data standards such as the Brain Imaging Data Structure (BIDS  ...  Neuroimaging researchers are open to data sharing and most have experience with sharing primary research data.  ... 
doi:10.1101/2021.11.26.470115 fatcat:awrtsknb2vhbdp5clvtr2rz6cu

Towards structured sharing of raw and derived neuroimaging data across existing resources [article]

D. B. Keator, K. Helmer, J. Steffener, J. A. Turner, T. G. M. Van Erp, S. Gadde, N. Ashish, G. A. Burns, B. N. Nichols, S. S. Ghosh
2013 arXiv   pre-print
In this manuscript, we present work from the Derived Data Working Group, an open-access group sponsored by the Biomedical Informatics Research Network (BIRN) and the International Neuroimaging Coordinating  ...  We believe that the framework and set of tools outlined in this manuscript have great potential for solving many of the issues the neuroimaging community faces when sharing raw and derived neuroimaging  ...  The International Neuroinformatics Coordinating Facility provided financial support for some of the work reported in this article (to Satrajit Ghosh).  ... 
arXiv:1209.5922v3 fatcat:pcebf7inybfstkgkf6pfwrny7y
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