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Data Sharing for Computational Neuroscience

Jeffrey L. Teeters, Kenneth D. Harris, K. Jarrod Millman, Bruno A. Olshausen, Friedrich T. Sommer
<span title="2008-02-08">2008</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/u22dt24i4vfrpip5iefcgkkzbi" style="color: black;">Neuroinformatics</a> </i> &nbsp;
Computational neuroscience was recommended as an ideal field for focusing data sharing, and specific methods, strategies and policies were suggested for achieving it.  ...  The new funding area is dedicated to the dissemination of high quality data sets with maximum scientific value for computational neuroscience.  ...  to discuss ways to advance public data sharing for computational neuroscience.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12021-008-9009-y">doi:10.1007/s12021-008-9009-y</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18259695">pmid:18259695</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/w3ht7cwt5zfwxmx3uaad6342ia">fatcat:w3ht7cwt5zfwxmx3uaad6342ia</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808070634/http://tdlc.ucsd.edu/research/publications/Teeters_etal_Data_Sharing_2008.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f0/0e/f00e84af70cde3c3f4a05dd7d27b6389b447302e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12021-008-9009-y"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Genetic Algorithm-Based Test Data Generation for Multiple Paths via Individual Sharing

Xiangjuan Yao, Dunwei Gong
<span title="">2014</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3wwzxqpotbc73bzpemzybzg7ee" style="color: black;">Computational Intelligence and Neuroscience</a> </i> &nbsp;
In this paper, we establish a mathematical model of generating test data for multiple paths coverage.  ...  However, the efficiency of genetic algorithm-based test data generation for path testing needs to be further improved.  ...  BK2012566), and the Fundamental Research Funds for the Central Universities (no. 2012QNA41).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2014/591294">doi:10.1155/2014/591294</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25691894">pmid:25691894</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4323069/">pmcid:PMC4323069</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/w2elljncevhktexwilu2nn6vz4">fatcat:w2elljncevhktexwilu2nn6vz4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190502200213/http://downloads.hindawi.com/journals/cin/2014/591294.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/26/de/26def95f5510b86efe912c24c4805d0e2ee4fd0a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2014/591294"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4323069" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

CRCNS.ORG: a repository of high-quality data sets and tools for computational neuroscience

Jeff L Teeters, Friedrich T Sommer
<span title="">2009</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hus553nnwfhsbi2wiivfjdwxru" style="color: black;">BMC Neuroscience</a> </i> &nbsp;
Teeters JL, Harris KD, Millman KJ, Olshausen BA, Sommer FT: Data sharing for computational neuroscience. Neuroinformatics 2008, 6:47-55.  ...  The goals of the repository are to serve the communities of Computational and Systems Neuroscience by providing experimental data for testing new algorithms for data analysis and modeling, and to also  ...  The goals of the repository are to serve the communities of Computational and Systems Neuroscience by providing experimental data for testing new algorithms for data analysis and modeling, and to also  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2202-10-s1-s6">doi:10.1186/1471-2202-10-s1-s6</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/amowzby5dffbxeuhovb3t34qem">fatcat:amowzby5dffbxeuhovb3t34qem</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170831214042/https://rd.springer.com/content/pdf/10.1186%2F1471-2202-10-S1-S6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/40/51/405186370dec4a1d3fdd6b7649cd649e0c4f412e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2202-10-s1-s6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

We Must Invest in Applied Knowledge of Computational Neurosciences and Neuroinformatics as an Important Future in Malaysia: The Malaysian Brain Mapping Project

Putra Sumari, Zamzuri Idris, Jafri Malin Abdullah
<span title="">2017</span> <i title="Penerbit Universiti Sains Malaysia"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vrw2jkmqhzealhkv47qfqcqv2y" style="color: black;">Malaysian Journal of Medical Sciences</a> </i> &nbsp;
We must invest in applied knowledge of computational neurosciences and neuroinformatics as an important future in Malaysia: the Malaysian brain mapping project.  ...  Abstract The Academy of Sciences Malaysia and the Malaysian Industry-Government group for High Technology has been working hard to project the future of big data and neurotechnology usage up to the year  ...  To prepare for the 4th Industrial Revolution (4IR) (1) , Malaysian neuroscientists must concentrate on engaging in analytics of big data collected on the human neuron system using computational neurosciences  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21315/mjms2017.24.1.1">doi:10.21315/mjms2017.24.1.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28381924">pmid:28381924</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5345998/">pmcid:PMC5345998</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/32kfytxo4rbknkk2yvrhskmbo4">fatcat:32kfytxo4rbknkk2yvrhskmbo4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180606034135/http://journal.usm.my/journal/mjms241_01ED.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5b/74/5b74927d3ec7bdc27b1f0cf6d5e4f6c88fc32f10.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21315/mjms2017.24.1.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345998" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Toward standard practices for sharing computer code and programs in neuroscience

Stephen J Eglen, Ben Marwick, Yaroslav O Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R Angus Silver, Andrew P Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J Willshaw (+2 others)
<span title="2017-05-25">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lnbpt3q37zbs5nc5hp4wlttdwy" style="color: black;">Nature Neuroscience</a> </i> &nbsp;
Computational techniques are central in many areas of neuroscience and are relatively easy to share.  ...  This paper describes why computer programs underlying scientific publications should be shared and lists simple steps for sharing.  ...  ACKNOWLEDGMENTS This article is based on discussions from a workshop to encourage sharing in neuroscience, held in Cambridge, UK, December 2014.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4550">doi:10.1038/nn.4550</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28542156">pmid:28542156</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ut77kcvc45fy7doxez2batpq2m">fatcat:ut77kcvc45fy7doxez2batpq2m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922073327/http://www.nature.com/neuro/journal/v20/n6/pdf/nn.4550.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/57/dd573ca469f5c87dce0a1381613019b96c95fa10.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4550"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

Test-retest measurements and digital validation for in vivo neuroscience

Franco Pestilli
<span title="2015-01-20">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/a577b42d4nfhddl7kurxnuyzem" style="color: black;">Scientific Data</a> </i> &nbsp;
Indeed, the value of neuroscience data sharing was highlighted in a recent Special Focus issue in Nature Neuroscience 6 .  ...  This is an important evolution in Neuroscience, since the value of open data sharing has not always been recognized 1-5 .  ...  Indeed, the value of neuroscience data sharing was highlighted in a recent Special Focus issue in Nature Neuroscience 6 .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2014.57">doi:10.1038/sdata.2014.57</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25977807">pmid:25977807</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4412151/">pmcid:PMC4412151</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ub2636shbfaojekftagpmllfry">fatcat:ub2636shbfaojekftagpmllfry</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829161838/http://www.indiana.edu/~peso/wordpress/wp-content/uploads/2013/07/sdata201457.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d6/5d/d65dc6450c2a958064715cdbfdd2929cc6473b04.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/sdata.2014.57"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412151" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Emerging Subspecialties: Neuroinformatics

Y. Hannawi, S. M. Smirnakis
<span title="2013-04-08">2013</span> <i title="Ovid Technologies (Wolters Kluwer Health)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/dogs2nidlzdtxigbzvv6d2bbc4" style="color: black;">Neurology</a> </i> &nbsp;
by the National Academy of Sciences, whose purpose was to evaluate the need to create databases for sharing primary neuroscience research data.  ...  to develop innovative tools for organization of large-volume, high-dimensional neuroscience data.  ...  performed by the National Academy of Sciences, whose purpose was to evaluate the need to create databases for sharing primary neuroscience research data.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1212/wnl.0b013e31828c2f2e">doi:10.1212/wnl.0b013e31828c2f2e</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23569003">pmid:23569003</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3662267/">pmcid:PMC3662267</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/qsrrnchywjhktfa4mbotbcngau">fatcat:qsrrnchywjhktfa4mbotbcngau</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180721104601/http://n.neurology.org/content/neurology/80/15/e166.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bf/c8/bfc885b05bbc55ee56d60ce90dec315fdcf1a8f5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1212/wnl.0b013e31828c2f2e"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3662267" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Slides Nair Calyam NeuroCI Course Gateways 2018.pdf [article]

Prasad Calyam
<span title="2018-10-01">2018</span> <i title="Figshare"> Figshare </i> &nbsp;
collaborations between computational neuroscience and cyberinfrastructure students and faculty.  ...  p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 9.0px Helvetica} Neuroscientists are increasingly relying on parallel and distributed computing resources for analysis and visualization of their neuron simulations  ...  format, Database, Data Analysis, Automation, Knowledge Sharing, … • Survey for users to provide requirements - https://missouri.qualtrics.com/jfe/form/SV_5cfSAgrbYmkU2Cp CyNeuro Gateway User Needs  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.7152536.v1">doi:10.6084/m9.figshare.7152536.v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/u5dz2yn6zrhplbytlr2jhztugu">fatcat:u5dz2yn6zrhplbytlr2jhztugu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200220113910/https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/13164560/SlidesNairCalyamNeuroCICourseGateways2018.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/50/73/50732df6b561e30cb8aa123f6a5164557cff9833.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.6084/m9.figshare.7152536.v1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> figshare.com </button> </a>

The Dangers of Plug-and-Play Simulation Using Shared Models

Erik De Schutter
<span title="2014-03-25">2014</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/u22dt24i4vfrpip5iefcgkkzbi" style="color: black;">Neuroinformatics</a> </i> &nbsp;
This journal strongly supports data sharing, 1,2 and by extension model sharing. 3 There is a strong need for model sharing in computational neuroscience, especially because the field is lagging behind  ...  in model sharing compared to the broader field of systems biology. 4 At present ModelDB 5 is the main resource for model sharing in neuroscience.  ...  This journal strongly supports data sharing, 1,2 and by extension model sharing. 3 There is a strong need for model sharing in computational neuroscience, especially because the field is lagging behind  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12021-014-9224-7">doi:10.1007/s12021-014-9224-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24664409">pmid:24664409</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/osf6tbnybvhhbdfovjne36tpgy">fatcat:osf6tbnybvhhbdfovjne36tpgy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180729045022/https://link.springer.com/content/pdf/10.1007%2Fs12021-014-9224-7.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/19/9e/199eec2aeca6453ec757476b997ab44d5a553865.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s12021-014-9224-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

On theorists and data in computational neuroscience

J. J. Hopfield
<span title="">2000</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lnbpt3q37zbs5nc5hp4wlttdwy" style="color: black;">Nature Neuroscience</a> </i> &nbsp;
So of course there is a role for theory in neuroscience. A question about the future of computational neuroscience can be bluntly put.  ...  Good experimentalists excel in the art of knowing which parts of their own unpublished data should be ignored, so not all data ought be shared. But certain sharing should become common practice.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/81484">doi:10.1038/81484</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sehziuhosjggrk7jtakxmp7rse">fatcat:sehziuhosjggrk7jtakxmp7rse</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210718060434/https://www.nature.com/articles/nn1100_1204.pdf?error=cookies_not_supported&amp;code=b60a232f-cf1b-4d10-b3ef-0a80c75b80b5" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/14/d6/14d60ce98d23bfcc73fad905f11484741789d8cf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/81484"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a>

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience

Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines
<span title="2016-09-15">2016</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2awqvcobm5bw3bostcqrykczhe" style="color: black;">Journal of Computational Neuroscience</a> </i> &nbsp;
ModelDB was founded in 1996 to support this new field and enhance the scientific credibility and utility of computational neuroscience models by providing a convenient venue for sharing them.  ...  We end by predicting a future for neuroscience increasingly fueled by new technology and high performance computation, and increasingly in need of comprehensive user-friendly databases such as ModelDB  ...  We are grateful for platforms provided to us for the curation of ModelDB models including the Louise cluster (part of Yale's HPC facilities operated by the Yale Center for Research Computing and Yale's  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10827-016-0623-7">doi:10.1007/s10827-016-0623-7</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27629590">pmid:27629590</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5279891/">pmcid:PMC5279891</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/km37i5yiv5ejvng2o4b7qp67my">fatcat:km37i5yiv5ejvng2o4b7qp67my</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210221156/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5279891&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/57/e1/57e102a01e37d32bf617e1036d86caafc31cd742.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10827-016-0623-7"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5279891" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

NEMAR: An open access data, tools, and compute resource operating on NeuroElectroMagnetic data [article]

Arnaud Delorme, Dung Truong, Choonhan Youn, Subha Sivagnanam, Kenneth Yoshimoto, Russell A. Poldrack, Amit Majumdar, Scott Makeig
<span title="2022-03-04">2022</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
use portal to leverage high-performance computing resources for neuroscience research.  ...  well as standards for specifying, identifying, and annotating deposited data.  ...  We thank Erich Huebner and Claire Stirm, for their support on the NEMAR web interface.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2203.02568v1">arXiv:2203.02568v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dsibypir7nh7lj72zr6obpws7i">fatcat:dsibypir7nh7lj72zr6obpws7i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220308025701/https://arxiv.org/ftp/arxiv/papers/2203/2203.02568.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ff/dd/ffddd7cf055bd03bdbd21c281286726e0f1ecfa2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2203.02568v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research

Victoria Stodden, Sheila Miguez
<span title="">2013</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/tol7woxlqjeg5bmzadeg6qrg3e" style="color: black;">Social Science Research Network</a> </i> &nbsp;
Computational techniques are central in many areas of neuroscience and are relatively easy to share.  ...  This paper describes why computer programs underlying scientific publications should be shared and lists simple steps for sharing.  ...  ACKNOWLEDGMENTS This article is based on discussions from a workshop to encourage sharing in neuroscience, held in Cambridge, UK, December 2014.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2139/ssrn.2322276">doi:10.2139/ssrn.2322276</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3ralyp36bfcy3n5kh27sqrimwq">fatcat:3ralyp36bfcy3n5kh27sqrimwq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922073327/http://www.nature.com/neuro/journal/v20/n6/pdf/nn.4550.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/57/dd573ca469f5c87dce0a1381613019b96c95fa10.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2139/ssrn.2322276"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ssrn.com </button> </a>

Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research

Victoria Stodden, Sheila Miguez
<span title="2014-07-09">2014</span> <i title="Ubiquity Press, Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7xepm7lmjvdizehzzrd3abbouu" style="color: black;">Journal of Open Research Software</a> </i> &nbsp;
Computational techniques are central in many areas of neuroscience and are relatively easy to share.  ...  This paper describes why computer programs underlying scientific publications should be shared and lists simple steps for sharing.  ...  ACKNOWLEDGMENTS This article is based on discussions from a workshop to encourage sharing in neuroscience, held in Cambridge, UK, December 2014.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5334/jors.ay">doi:10.5334/jors.ay</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/26z5wbxe6jfprfjx3vgrrcjuuq">fatcat:26z5wbxe6jfprfjx3vgrrcjuuq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170922073327/http://www.nature.com/neuro/journal/v20/n6/pdf/nn.4550.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dd/57/dd573ca469f5c87dce0a1381613019b96c95fa10.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.5334/jors.ay"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Ethical Issues in Neuroinformatics [chapter]

Athanasios Alexiou, Georgia Theocharopoulou, Panayiotis Vlamos
<span title="">2013</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kss7mrolvja63k4rmix3iynkzi" style="color: black;">IFIP Advances in Information and Communication Technology</a> </i> &nbsp;
In this paper we take into consideration the ethical implications that arise in the application of information-based methods in neuroscience research processes.  ...  Comprehending the neurobiological basis of consciousness and memory mechanisms in the brain using information technology techniques involves mainly brain data analysis.  ...  and sharing of neuroscience data at all levels of analysis • Development of tools for analyzing and modelling neuroscience data • Development of computational models of the nervous system and neural processes  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-41142-7_71">doi:10.1007/978-3-642-41142-7_71</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/g6bkr7q4uvd2zkxo7ot5l6k5ly">fatcat:g6bkr7q4uvd2zkxo7ot5l6k5ly</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190503010243/https://link.springer.com/content/pdf/10.1007%2F978-3-642-41142-7_71.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/da/5b/da5bbee7853942fb92a6526eb72a60eb4c9ef9e0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-642-41142-7_71"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>
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