A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Filters
DNA Data Bank of Japan
2016
Nucleic Acids Research
Preserved Fulltext
The DNA Data Bank of Japan (DDBJ) (http://www. ddbj.nig.ac.jp) has been providing public data services for thirty years (since 1987). ...
We are collecting nucleotide sequence data from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc. org), in collaboration with the ...
ACKNOWLEDGEMENTS We gratefully acknowledge the support of Koji Watanabe, Chiharu Kawagoe, and all members of DDBJ Center for ...
doi:10.1093/nar/gkw1001
pmid:27924010
pmcid:PMC5210514
fatcat:sbslos5mnbgnpfurvzabh2svki
DNA Data Bank of Japan: 30th anniversary
2017
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan (DDBJ) Center (http: //www.ddbj.nig.ac.jp) has been providing public data services for 30 years since 1987. ...
Furthermore, we highlight our responses to the amended Japanese rules for the protection of personal information and the launch of the DDBJ Group Cloud service for sharing pre-publication data among research ...
INTRODUCTION The DNA Data Bank of Japan (DDBJ, http://www.ddbj. nig.ac.jp) (1) is a public database of nucleotide sequences established at the National Institute of Genetics (NIG, https: //www.nig.ac.jp ...
doi:10.1093/nar/gkx926
pmid:29040613
pmcid:PMC5753283
fatcat:3n45p6fz6bcfzgtv6j2prd44vq
DNA Data Bank of Japan (DDBJ) in XML
2003
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan (DDBJ, http:// www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. ...
The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). ...
ACKNOWLEDGEMENTS We thank the DDBJ members for making it possible to run DDBJ well in collaboration with EMBL Bank and GenBank. ...
doi:10.1093/nar/gkg088
pmid:12519938
pmcid:PMC165535
fatcat:yidibr4vkjbhtazo425ipn46ie
DNA data bank of Japan (DDBJ) progress report
2015
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan Center (DDBJ Center; http://www.ddbj.nig.ac.jp) maintains and provides public archival, retrieval and analytical services for biological information. ...
In addition, the DDBJ Center develops semantic web technologies for data integration and sharing in collaboration with the Database Center for Life Science (DB-CLS) in Japan. ...
ACKNOWLEDGEMENTS We gratefully acknowledge the support of Koji Watanabe, Chiharu Kawagoe, and all members of DDBJ Center for their assistance in data collection, annotation, release, and software development ...
doi:10.1093/nar/gkv1105
pmid:26578571
pmcid:PMC4702806
fatcat:dsvzn2iivjb7jhqnqhoehswhtu
DNA Data Bank of Japan at work on genome sequence data
1998
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
We at the DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp ) have recently begun receiving, processing and releasing EST and genome sequence data submitted by various Japanese genome projects. ...
This system (http://mol.genes.nig.ac.jp/ ecoli/ ) can in theory be used for any genome sequence data. These activities will facilitate processing of large quantities of EST and genome data. ...
INSD is a tripartite international collaboration between the EMBL Nucleotide Sequence Database, GenBank and the DNA Data Bank of Japan (DDBJ). ...
doi:10.1093/nar/26.1.16
pmid:9399792
pmcid:PMC147185
fatcat:5gln47g55fhudcoqzobyalkequ
DNA Data Bank of Japan dealing with large-scale data submission
1999
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan (DDBJ) (http//:www. ddbj.nig.ac.jp ) has developed a software system for mass submissions to cope with a recent expansion of EST and genome data submissions. ...
DDBJ has received large scale data of Homo sapiens, Arabidopsis and Pyrococcus from Japanese researchers who made full use of the new submission system. ...
INTRODUCTION When we began data bank activity at the DNA Data Bank of Japan (DDBJ) (http//:www.ddbj.nig.ac.jp ) more than 10 years ago, we expected that the amount of submitted data would double over the ...
doi:10.1093/nar/27.1.25
pmid:9847134
pmcid:PMC148089
fatcat:zkf63jqknzgmjd6v5pzn6lyiai
Visualization of Sequence and Biological Data in DNA Data Bank of Japan
1997
Genome Informatics Series
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
Data submitters, reviewers and users of DNA Data Bank of Japan (DDBJ) processes sequence data longer than 1M base pairs thanks to genome projects. ...
A newly developed data dissemination system named Genome Information Broker and the enhancement of Web data submission system SAKURA are introduced here from the viewpoint of visualization. ...
Therefore, it is obvious that the data bank and the user require a tool which provides a comprehensive view of a mega sequence like a genome sequence. ...
doi:10.11234/gi1990.8.236
fatcat:oe4gffumlnclzc63flwq7lzmlu
DNA Data Bank of Japan in the age of information biology
1997
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
DNA Data Bank of Japan (DDBJ) began its activities in 1986 in collaboration with EMBL in Europe and GenBank in the United States. ...
The data bank also built a database management system (Yamato II), incorporating the techniques and functions of the object-oriented database, in order to efficiently process the data it has collected. ...
INTRODUCTION The DNA Data Bank of Japan (DDBJ) began its activities in earnest in 1986 in collaboration with EMBL and GenBank. ...
doi:10.1093/nar/25.1.14
pmid:9016494
pmcid:PMC146410
fatcat:fz6zk7shondftb2plfd7gftf54
DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams
2000
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
It is emphasised that the collaboration between data producing teams and the data bank is crucial in carrying out these processes smoothly. ...
To cope with this situation, we have developed tools not only for processing such massive amounts of data but also for efficiently retrieving data on demand. ...
Hashimoto of DDBJ for their contributions to the present report. ...
doi:10.1093/nar/28.1.24
pmid:10592172
pmcid:PMC102400
fatcat:naqluyolf5blnny7ofrspgsvsa
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
2002
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan (DDBJ, http:// www.ddbj.nig.ac.jp) has made an effort to collect as much data as possible mainly from Japanese researchers. ...
The increase rates of the data we collected, annotated and released to the public in the past year are 43% for the number of entries and 52% for the number of bases. ...
ACKNOWLEDGEMENTS We thank the rest of the DDBJ members for making it possible to run well this international DNA data bank. ...
doi:10.1093/nar/30.1.27
pmid:11752245
pmcid:PMC99140
fatcat:jwasybhs2bgqnf7bqnjczxzrsi
Applications based on object oriented technology at DNA Data Bank of JAPAN(DDBJ)
日本DNAデータバンクにおけるオブジェクト指向技術の活用
2001
Joho Chishiki Gakkaishi
日本DNAデータバンクにおけるオブジェクト指向技術の活用
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
り塩 基配 列 デ ー タ ベ ー ス の 開発 に 着手 し 、 日 本 DNA デ ー タ バ ン ク ( DNA Data Bank of JAPAN ， 以 下 DDBJ ) と し て 国 際的 な 事 業 を展 開 し て い る 。 ...
Nuclieci Acids Research ， pp25 − 28 ， VQL 27 ， N o ． 1 ， 1999 ［ 3 ］ DNA Data Bank of Japan ( DDBJ ) in collaboration with mass sequencing teams ． ...
doi:10.2964/jsik_kj00001039354
fatcat:dqe27gb4ifgmnbyalcdf6655vm
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
2011
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The DNA Data Bank of Japan (DDBJ; http://www .ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. ...
DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. ...
ACKNOWLEDGEMENTS We gratefully acknowledge the support of all members of DDBJ for data collection, annotation and release and for software development. ...
doi:10.1093/nar/gkr994
pmid:22110025
pmcid:PMC3244990
fatcat:kbjrao6jw5hnrc4tcpq767mgsi
Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418
2020
Data in Brief
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
NGS data was deposited in the DNA Data Bank of Japan (DDBJ) under accession number DRA009307. ...
Two strain of 'Ukushima' and 'G418' were identified as salt tolerance strains in Vigna nakashimae from gene bank collection. ...
Acknowledgments Support for the work of EOT was provided by JSPS KAKENHI Grant Number 25871107. ...
doi:10.1016/j.dib.2020.105131
pmid:32021887
pmcid:PMC6994819
fatcat:z3aczin33bdgpcbhysjtcswoqa
Draft genome sequence of Japanese pear (Pyrus pyrifolia)
2018
Data in Brief
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
Data on the draft genome obtained in this study has been deposited to the DNA Data Bank of Japan (DDBJ). ...
The Japanese pear (Pyrus pyrifolia), a member of the family Rosaceae, is one of the most important fruit trees in Japan. ...
Supporting information Transparency data associated with this article can be found in the online version at https://doi.org/ 10.1016/j.dib.2018.07.007. ...
doi:10.1016/j.dib.2018.07.007
pmid:30229099
pmcid:PMC6141501
fatcat:4phfb47f4jctzg65lek2wx4liq
Publicly-funded biobanks and networks in East Asia
2016
SpringerPlus
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Asian countries, especially China, Japan, and Korea are very active in biobanking activities under the strategic plans coordinated by their governments. ...
With the enactment of the Nagoya Protocol, international competitions to secure biological resources are intensifying. ...
Acknowledgements This study is supported by the Ministry of Science, ICT, and Future Planning and the National Research Foundation of Korea (NRF-2015M3A9B8028468). ...
doi:10.1186/s40064-016-2723-2
pmid:27462528
pmcid:PMC4945521
fatcat:oz4nqjgjazb5jczqptqstpahpa
« Previous
Showing results 1 — 15 out of 53,676 results