A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Filters
DDBJ in collaboration with mass-sequencing teams on annotation
2004
Nucleic Acids Research
Preserved Fulltext
We are also in collaboration with a RIKEN team to accept and release the CAGE (Cap Analysis Gene Expression) data under a new category, MGA (Mass Sequences for Genome Annotation). ...
On the other hand, we hosted workshops for human full-length cDNA annotation and participated in jamborees of mouse full-length cDNA annotation. The annotated data are made public at DDBJ. ...
With this in mind, a RIKEN team sequenced a huge number of expressed sequences in 5 0 UTR, CAGE (Cap Analysis Gene Expression) sequences, for mouse (10) and plans to submit the data to DDBJ. ...
doi:10.1093/nar/gki020
pmid:15608189
pmcid:PMC539974
fatcat:jfo44562jbddrdhwtoaqdzpeh4
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
2002
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
HGS provides one with a set of sequences being as continuous as possible in any one of the 24 chromosomes. Both GIB and HGS have been updated incorporating newly available data and retrieval tools. ...
The increase rates of the data we collected, annotated and released to the public in the past year are 43% for the number of entries and 52% for the number of bases. ...
ACKNOWLEDGEMENTS We thank the rest of the DDBJ members for making it possible to run well this international DNA data bank. ...
doi:10.1093/nar/30.1.27
pmid:11752245
pmcid:PMC99140
fatcat:jwasybhs2bgqnf7bqnjczxzrsi
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
2011
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). ...
The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. ...
ACKNOWLEDGEMENTS We gratefully acknowledge the support of all members of DDBJ for data collection, annotation and release and for software development. ...
doi:10.1093/nar/gkr994
pmid:22110025
pmcid:PMC3244990
fatcat:kbjrao6jw5hnrc4tcpq767mgsi
DDBJ in preparation for overview of research activities behind data submissions
2006
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2006; you can also visit the original URL.
The file type is application/pdf.
The results of indexing also allow one to grasp research projects in life sciences that promoted and produced the DNA sequences submitted to INSDC. ...
In addition to the data collection, we have indexed the submitted data to the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc.org) to classify the entries into research ...
ACKNOWLEDGEMENTS DDBJ is funded by Ministry of Education, Culture, Sports, Science and Technology (MEXT) with Management expenses grants for national university corporations. ...
doi:10.1093/nar/gkj111
pmid:16381940
pmcid:PMC1347473
fatcat:jxv72j4gebbi3ergixnyizrlqy
DNA Data Bank of Japan: 30th anniversary
2017
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
We are collecting nucleotide sequence data and associated biological information from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC), in collaboration with ...
The DDBJ Center also services the Japanese Genotype-phenotype Archive (JGA) with the National Bioscience Database Center to collect genotype and phenotype data of human individuals. ...
We have semantically represented the DDBJ annotated sequence records into the Resource Description Framework (RDF) in collaboration with the Database Center for Life Science (DBCLS) (1, 26, 27) . ...
doi:10.1093/nar/gkx926
pmid:29040613
pmcid:PMC5753283
fatcat:3n45p6fz6bcfzgtv6j2prd44vq
DNA Data Bank of Japan
2016
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
We are collecting nucleotide sequence data from researchers as a member of the International Nucleotide Sequence Database Collaboration (INSDC, http://www.insdc. org), in collaboration with the ...
The DNA Data Bank of Japan (DDBJ) (http://www. ddbj.nig.ac.jp) has been providing public data services for thirty years (since 1987). ...
ACKNOWLEDGEMENTS We gratefully acknowledge the support of Koji Watanabe, Chiharu Kawagoe, and all members of DDBJ Center for ...
doi:10.1093/nar/gkw1001
pmid:27924010
pmcid:PMC5210514
fatcat:sbslos5mnbgnpfurvzabh2svki
DDBJ launches a new archive database with analytical tools for next-generation sequence data
2009
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
In this period, we started a novel user announcement service using Really Simple Syndication (RSS) to deliver a list of data released from DDBJ on a daily basis. ...
Concurrently, for read data registered in DRA, a semi-automatic annotation tool called the 'DDBJ Read Annotation Pipeline' was released as a preliminary step. ...
Yoshio Tateno for support in the form of database maintenance and INSD collaboration. ...
doi:10.1093/nar/gkp847
pmid:19850725
pmcid:PMC2808917
fatcat:2yd7lgivcjdunjkd66kshsexim
DNA Data Bank of Japan at work on genome sequence data
1998
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
We also developed a mass submission tool to cope with a large quantity of data. In addition, to provide genome data on WWW, we developed a genome information system using Java. ...
Since the quantity of data is very large, we organized teams to conduct preliminary discussions with project teams about data submission and handling for release to the public. ...
The sequence data were annotated in collaboration between the genome team and DDBJ (19) . The US team, however, went a bit farther in completing the whole genome (13) . ...
doi:10.1093/nar/26.1.16
pmid:9399792
pmcid:PMC147185
fatcat:5gln47g55fhudcoqzobyalkequ
Globalizing Genomics: The Origins of the International Nucleotide Sequence Database Collaboration
2017
Journal of the History of Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
This paper describes the origins of the International Nucleotide Sequence Database Collaboration between GenBank in the United States, the European Molecular Biology Laboratory Databank, and the DNA Database ...
However, the large-scale international circulation of nucleotide sequence information did not begin with the Human Genome Project. ...
At the NIG, I received the generous help of Machiko Itoh, who provided many documents related to DDBJ, and also helped me to organize interviews with those involved with ...
doi:10.1007/s10739-017-9490-y
pmid:28986915
fatcat:panniideznbnhfelfspeygb6v4
The EMBL nucleotide sequence database
1998
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
In collaboration with DDBJ and GenBank the database is produced, maintained and distributed at the European Bioinformatics Institute. ...
Database releases are produced quarterly and are distributed on CD-ROM. ...
This sequence based taxonomy was created and is maintained by the NCBI with assistance from external advisors and in collaboration with EMBL and DDBJ. ...
doi:10.1093/nar/26.1.8
pmid:9399791
pmcid:PMC147241
fatcat:cnhmybcgfndazn73wbcr7tleu4
GENETICS: GenBank--Natural History in the 21st Century?
2008
Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
First, it instituted a tight collaboration with the EMBL database, established a few months earlier at Heidelberg, and, after 1986, with the DDBJ. ...
The collaborations among GenBank, EMBL, and DDBJ required delicate negotiations to establish common entry standards; database managers could not rely on an equivalent of Linnaeus's binomial system, which ...
doi:10.1126/science.1163399
pmid:18948528
fatcat:y2g23bpdafbibhdngfrptwblgi
The Universal Protein Resource (UniProt)
2007
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Universal Protein Resource (UniProt) provides a stable, comprehensive, freely accessible, central resource on protein sequences and functional annotation. ...
The UniProt Consortium is a collaboration between the European Bioinformatics Institute (EBI), the Protein Information Resource (PIR) and the Swiss Institute of Bioinformatics (SIB). ...
Additional support for the EBI's involvement in UniProt comes from the European Commission contract FELICS (021902RII3) and from the NIH grant 2 P41 HG002273-07. ...
doi:10.1093/nar/gkl929
pmid:17142230
pmcid:PMC1669721
fatcat:3doko4bysfhmzddimueyp2tj3y
The GenBank Sequence Database
[chapter]
2006
Methods of biochemical analysis
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2006; you can also visit the original URL.
The file type is application/pdf.
DNA Data Bank
of Japan (DDBJ) in collaboration with mass sequencing teams. Nucl. Acids Res. 28, 24–
26.
APPENDICES
Appendix 3.1. ...
One common type of annotation on a DNA sequence record
is the coding sequence (CDS). ...
doi:10.1002/9780470110607.ch2
fatcat:uzsbdzxzhzcxlpc7pgvjhkoplq
The Universal Protein Resource (UniProt) 2009
2009
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
UniParc records are designed to be without annotation since the annotation will be only true in the real biological context of the sequence: proteins with the same sequence may have different functions ...
UniMES is available on the ftp site in FASTA format with a UniMES matches to InterPro methods file. ...
doi:10.1093/nar/gkn664
pmid:18836194
pmcid:PMC2686606
fatcat:4nz73vlhq5f7fbcyreyxbtse6a
Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop
2010
Viruses
Preserved Fulltext
The Internet Archive has a preservation copy of this work in our general collections.
The file type is application/pdf.
Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology. ...
sequence databases. ...
Craig Venter Institute for sponsoring the Genome Annotation Workshop. ...
doi:10.3390/v2102258
pmid:21994619
pmcid:PMC3185566
fatcat:twb65cwuu5htfccxzaft2nr5gu
« Previous
Showing results 1 — 15 out of 211 results