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DBTSS/DBKERO for integrated analysis of transcriptional regulation

Ayako Suzuki, Shin Kawano, Toutai Mitsuyama, Mikita Suyama, Yae Kanai, Katsuhiko Shirahige, Hiroyuki Sasaki, Katsushi Tokunaga, Katsuya Tsuchihara, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
2017 Nucleic Acids Research  
DBTSS (Database of Transcriptional Start Sites)/DBKERO (Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts) is the database originally initiated  ...  In recent years, we updated the database to assist users to elucidate biological relevance of the human genome variations or somatic mutations in cancers which may affect the transcriptional regulation  ...  Horiuchi at the University of Tokyo and the technical staffs of Database Center for Life Science.  ... 
doi:10.1093/nar/gkx1001 pmid:29126224 pmcid:PMC5753362 fatcat:hoqgfuyvbzd5jcj57peadvtwni

ncPro-ML: an integrated computational tool for identifying non-coding RNA promoters in multiple species

Qiang Tang, Fulei Nie, Juanjuan Kang, Wei Chen
2020 Computational and Structural Biotechnology Journal  
The promoter is located near the transcription start sites and regulates transcription initiation of the gene.  ...  Accurate identification of promoters is essential for understanding the mechanism of gene regulation.  ...  Compared with other TSS annotation databases, i.e. refTSS [18] and DBTSS/ DBKERO [19] , the EPD contains non-redundant collection promoters with stronger support from experimental data.  ... 
doi:10.1016/j.csbj.2020.09.001 pmid:33005306 pmcid:PMC7509369 fatcat:jcbct3dvmvfbjkdgpsuj67corq