A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Filters
DBAli tools: mining the protein structure space
2007
Nucleic Acids Research
Preserved Fulltext
Thus, the DBAli tools, which are freely accessible via the World Wide Web at http://salilab.org/DBAli/, allow users to mine the protein structure space by establishing relationships between protein structures ...
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). ...
ACKNOWLEDGEMENTS We are grateful to Dr Angel Ortiz for the MAMMOTH program. We would also like to thank the JMol team, Erik Bosrup and Stijn van Dongen for JMol, overLib and MCL, respectively. ...
doi:10.1093/nar/gkm236
pmid:17478513
pmcid:PMC1933139
fatcat:uimvsv7rgrajlczypwgi6jfnyy
Identification of similar regions of protein structures using integrated sequence and structure analysis tools
2006
BMC Structural Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
With structural genomics initiatives determining structures with little, if any, functional characterization, development of protein structure and function analysis tools are a necessary endeavor. ...
environments that make that match using a suite of sequence and structure analysis tools. ...
The DBAli tools provide CATH, SCOP, EC, GO and keyword annotations for a protein structure [21] . ProFunc uses sequence, structure and residue templates to characterize proteins of interest [22] . ...
doi:10.1186/1472-6807-6-4
pmid:16526955
pmcid:PMC1435900
fatcat:pjjbmcg5gfcclgcpwuyqb234hy
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures
2007
BMC Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Acknowledgements: This work is funded by an RO1 from the NHGRI and by a Presidential Early Career Award for Scientists and Engineers from the National Science Foundation. ...
Given a query structure, the AnnoLite program searches DBAli for structurally similiar proteins and collects their known annotations. ...
Structural Genomics aims to cover the structural space by selecting targets from groups of proteins of unknown structure [4] . ...
doi:10.1186/1471-2105-8-s4-s4
pmid:17570147
pmcid:PMC1892083
fatcat:o5p5c46emzbhxlmq27vqibskdi
Medium- and short-chain dehydrogenase/reductase gene and protein families
2008
Cellular and Molecular Life Sciences (CMLS)
Preserved Fulltext
The Internet Archive has digitized a microfilm copy of this work. It may be possible to borrow a copy for reading.
DBAIi tools: mining the protein structure space. Nucleic Acids Res. 35, W393-397
Ramaswamy, S., Scholze, M. and Plapp, B. V. (1997). Binding of formamides to liver alcohol dehydrogenase. ...
Secondary-structure matching (SSM), a new tool for fast protein structure align- ment in three dimensions. Acta Crystallogr. 60, 2256-2268. Emsley, P. and Cowtan, K. (2004). ...
doi:10.1007/s00018-008-8590-4
pmid:19011748
fatcat:ltvbhexxdnchvj74hlw4hbfcha
Abstracts from the 9th Meeting of The European Association of NeuroOncology, September 16-19, 2010, Maastricht, The Netherlands
2010
Neuro-Oncology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
Furthermore, the levels of MGMT, MLH1, MSH2, MSH6, and PMS2 proteins were analyzed semiquantitatively by immunohistochemistry (IHC) in 43 patients. ...
However, immunohistochemical expression scores for MLH1, MSH2, MSH6, and PMS2 proteins were frequently reduced in the recurrent tumor when compared with the corresponding primary tumor. ...
A spontaneous speech analysis might be a more sensitive tool to detect language problems than structured language tasks, such as naming, all linguistic levels are involved. ...
doi:10.1093/neuonc/noq085
fatcat:gjf6gsrup5derot25vxenj6tvy
Wolne oprogramowanie QGIS i jego możliwości wykorzystania w edukacji
2017
Edukacja – Technika – Informatyka
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
proteins. ...
compositions and structures of preparations of tissues of wheat rich by proteins, to determine the rational quantity of nutritional fibers to be put in canned meat products, to identify the technological ...
With this proposed technology enterprises can save money and space by combining multiple authentication tools such as 'valid' ID to be embedded in a barcode or NFC target into a single label. ...
doi:10.15584/eti.2017.4.45
fatcat:7ktfbpdmprcklkhx2jfnj66j2i