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Curation roles and perceived priorities for data quality dimensions and skills in genome curation work

Hong Huang, Besiki Stvilia, Corinne Jörgensen
2012 Proceedings of the American Society for Information Science and Technology  
This research surveyed 158 genomics scientists on their perception and priorities for data quality dimensions and quality sills.  ...  The study's findings show that depending on the roles played in scientific data sharing and curation process, genome scientists may have different priorities for and ways of assessing data quality.  ...  CONCLUSION AND FUTURE WORK This research examined genomics scientists' perception and priorities for data quality and quality skills.  ... 
doi:10.1002/meet.14504901312 fatcat:ytmymo2coraxjk22antmocstvq

Genomics data curation roles, skills and perception of data quality

Hong Huang, Corinne Jörgensen, Besiki Stvilia
2015 Library & Information Science Research  
This study examines how genomics scientists' perceived priorities for data quality and data quality skills differ when assuming different roles played in genomics data curation work.  ...  the design of curation role specific tool dashboards and visualization interfaces for genomics data.  ...  It is necessary to evaluate the role based data quality activities and related skills in genome curation for further development and support for these roles.  ... 
doi:10.1016/j.lisr.2014.08.003 fatcat:qnekvrl44zbpnmembzkegdacsu

Domain knowledge and data quality perceptions in genome curation work

Hong Huang
2015 Journal of Documentation  
Domain knowledge and data quality perceptions in genome curation work. Journal of Documentation. 2  ...  The findings may help develop data quality assurance policies and training seminars and maximize the efficiency of genome data management. Cited as: Huang, H. (in press).  ...  It reports members' perceived priorities for data quality criteria and identified related DQ skills in the context of genomic data curation work (see Figures 2, 3) .  ... 
doi:10.1108/jd-08-2013-0104 fatcat:pyy5iwqnhngi7h745t224f5zmi

Prioritization of data quality dimensions and skills requirements in genome annotation work

Hong Huang, Besiki Stvilia, Corinne Jörgensen, Hank W. Bass
2011 Journal of the American Society for Information Science and Technology  
This study contributes towards better understanding of scientist perception and priorities for data quality and data quality assurance skills needed in genome annotation.  ...  data quality and skills for genome annotation.  ...  (in press, 2011). Prioritization of data quality dimensions and skills requirements in genome annotation work.  ... 
doi:10.1002/asi.21652 fatcat:nimqhiu6y5fcbhjwkincelqiju

Research project tasks, data, and perceptions of data quality in a condensed matter physics community

Besiki Stvilia, Charles C. Hinnant, Shuheng Wu, Adam Worrall, Dong Joon Lee, Kathleen Burnett, Gary Burnett, Michelle M. Kazmer, Paul F. Marty
2014 Journal of the Association for Information Science and Technology  
The findings of the study can inform the design of a CMP data curation model that is aligned and harmonized with the community's research work structure and data practices.  ...  In addition, the study develops a model of data quality perceptions by CMP scientists consisting of four data quality constructs.  ...  This research was supported in part by the Florida State University Office of Research and by the NSF under Grant OCI-0942855.  ... 
doi:10.1002/asi.23177 fatcat:t576muzl5vgslcg322asv7ckja

When humans are the exception: Cross-species databases at the interface of biological and clinical research

Sabina Leonelli
2012 Social Studies of Science  
This paper identifies and discusses four key problems encountered by database curators when integrating human and non-human data within the same database: (1) picking criteria for what counts as reliable  ...  for the dissemination of data on humans and as a tool for comparing results of medical significance across the human-animal boundary.  ...  Acknowledgments This research was funded by the ESRC as part of the ESRC Centre for Genomics in Society.  ... 
doi:10.1177/0306312711436265 pmid:22848998 fatcat:qpazntpt4negbda4ev2t4qswbq

Global Data Quality Assessment and the Situated Nature of "Best" Research Practices in Biology

Sabina Leonelli
2017 Data Science Journal  
data production technologies as proxy for assessing data quality.  ...  Since the emergence of molecular approaches, many biologists have focused their research, and related methods and instruments for data production, on the study of genes and genomes.  ...  Rajan and Kris Peterson; and the dozens of researchers who spared time and effort to discuss their methods, outputs and working conditions with me and my colleagues.  ... 
doi:10.5334/dsj-2017-032 fatcat:arngxmf55bemxio7welyu37kum

Open Science in Practice: Researcher Perspectives and Participation

Angus Whyte, Graham Pryor
2011 International Journal of Digital Curation  
We review the policy background to open science, and literature on the benefits attributed to open data, considering how these relate to curation and to questions of who participates in science.  ...  We provide a typology of degrees of open working across the research lifecycle, and conclude that better support for open working, through guidelines to assist research groups in identifying the value  ...  We also thank reviewers of the paper for their very helpful comments.  ... 
doi:10.2218/ijdc.v6i1.182 fatcat:bmdugla3mjcsxirkalpun2pavu

'Overcoming the Bottleneck': Knowledge Architectures for Genomic Data Interpretation in Oncology [chapter]

Alberto Cambrosio, Jonah Campbell, Etienne Vignola-Gagné, Peter Keating, Bertrand R. Jordan, Pascale Bourret
2020 Data Journeys in the Sciences  
Acknowledgements Research for this paper was made possible by the following grants: Canadian Institutes of Health Research MOP-133687 and French National Cancer Institute (INCa) SHSESP14-002.  ...  We would like to thank all the knowledgebase developers who agreed to be interviewed, in some cases repeatedly. Special thanks to Sabina Leonelli who singlehandedly coerced us into writing this paper.  ...  Architectures for Genomic Data…  ... 
doi:10.1007/978-3-030-37177-7_16 fatcat:tij2edwyqba6nlfxrwe2hy3unq

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Ramona Walls, Carson Andorf, Elizabeth Arnaud, Tanya Z Berardini, Clayton Birkett, Steve Cannon, James Carson (+40 others)
2018 Database: The Journal of Biological Databases and Curation  
with regard to data curation.  ...  AgBioData ( is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development  ...  Acknowledgements We acknowledge with thanks The National Science Foundation Plant Genome Research Program Award # 1444573 for funding the AgBioData Workshop and development and hosting of the AgBio-Data  ... 
doi:10.1093/database/bay088 pmid:30239679 pmcid:PMC6146126 fatcat:spcxmd66qrgdnos4larqfvf6ai

Sharing health research data in low-resource settings: Supporting necessary infrastructure and building on good practices

Elizabeth Pisani, Laura Merson, Amrita Ghataure, Genera Castillo, Anne-Marie Castillo, Yola Moride
2018 Figshare  
The primary purpose of this report is to provide an overview of emerging good practices in the sharing of data related to infectious diseases in low and middle income settings, and to suggest how funders  ...  of health research can best support systems and infrastructures that make data sharing more useful, equitable, ethical and efficient.  ...  and maintaining it in fields other than genomics. 1-3 A few investigators working in clinical research took a lead in data sharing not because they were required to, but because they saw value in sharing  ... 
doi:10.6084/m9.figshare.6042047.v1 fatcat:c7onbhsbvnczpcglyjk5h4v35q

Qualidade de dados em gestão de dados de pesquisa: um estudo bibliométrico

Daiane Marcela Piccolo, Antonio Victor Wolf Tadini, Heytor Diniz Teixeira, Leonardo Castro Botega, Ricardo César Gonçalves Sant'Ana, José Eduardo Santarem Segundo, Rachel Cristina Vesu Alves
2022 Em Questão  
and skills requirements in genome annotation work services 32 Sankofa pediatric HIV disclosure intervention cyber data management: building capacity in a resource-55 Curation roles and perceived priorities  ...  for data quality dimensions and skills in genome curation work 10 Enhancing medical data quality through data curation: a case study in primary Sjogren's syndrome 11 Provenance-aware workflow for data  ... 
doi:10.19132/1808-5245281.159-184 fatcat:fzalqaiw3nhrhfmu3qbwkux464

Integrating data to acquire new knowledge: Three modes of integration in plant science

Sabina Leonelli
2013 Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences  
Maureen O'Malley and Orkun Soyer have pointed to the scientific work involved in data integration as important and distinct from the work required by other forms of integration, such as methodological  ...  Here I explore what data integration involves in more detail and with a focus on the role of data-sharing tools, like online databases, in facilitating this process; and I point to the philosophical implications  ...  skills involved in understanding that the symbols used to capture sequence data refer to the order and quality of nucleic acid molecules within a genome (for a detailed discussion, see Leonelli 2009b)  ... 
doi:10.1016/j.shpsc.2013.03.020 pmid:23571025 fatcat:jvvsjkee7zaojlc7llnqm2qw7m

Big Data in Biodiversity Science: A Framework for Engagement

Tendai Musvuugwa, Muxe Gladmond Dlomu, Adekunle Adebowale
2021 Technologies  
The framework considers data generation and collection, storage and curation, access and analysis and, finally, communication as distinct yet interdependent themes for engaging biodiversity science for  ...  In this review, we propose such a schematic based on the life cycle of data to interrogate the science.  ...  Acknowledgments: The authors thank Guy Midgley for reading through and offering helpful suggestions on an earlier draft of the manuscript.  ... 
doi:10.3390/technologies9030060 fatcat:iozoj67ktbe6davljeh5o7xrqa

Sociotechnical Obstacles to Archaeological Data Reuse

Adela Sobotkova
2018 Advances in Archaeological Practice  
ABSTRACTThe ease of digital data capture and the proliferation of concepts such as the "data deluge" suggest that modern researchers are drowning in datasets.  ...  This article explores the difficulties that surround data reuse in large-scale regional research, including the cost and coordination necessary to extract useful data from digitized PDF reports.  ...  No permits were required for the research reported here. Data Availability Statement No original data are presented in this essay.  ... 
doi:10.1017/aap.2017.37 fatcat:qys2adzqjrb2ze4d3e5w3zb6eu
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