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Generative Embedding for Model-Based Classification of fMRI Data

Kay H. Brodersen, Thomas M. Schofield, Alexander P. Leff, Cheng Soon Ong, Ekaterina I. Lomakina, Joachim M. Buhmann, Klaas E. Stephan, Olaf Sporns
<span title="2011-06-23">2011</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ch57atmlprauhhbqdf7x4ytejm" style="color: black;">PLoS Computational Biology</a> </i> &nbsp;
The practicality of current classifiers, however, is restricted by two major challenges.  ...  Generative embedding achieves a near-perfect balanced classification accuracy of 98% and significantly outperforms conventional activation-based and correlation-based methods.  ...  Generative embedding Generative embedding for model-based classification may provide a solution to the challenges outlined above.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1002079">doi:10.1371/journal.pcbi.1002079</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21731479">pmid:21731479</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3121683/">pmcid:PMC3121683</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2eq5exvacvhftnbgmgcq33wa7e">fatcat:2eq5exvacvhftnbgmgcq33wa7e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20150913222035/http://www.ong-home.my/papers/brodersen11gen-embed.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/7e/10/7e1003fa30c7ccee9bfe423bf9c5792ec5a9b286.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pcbi.1002079"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121683" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Classification of autistic individuals and controls using cross-task characterization of fMRI activity

Guillaume Chanel, Swann Pichon, Laurence Conty, Sylvie Berthoz, Coralie Chevallier, Julie Grèzes
<span title="">2016</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/47gmsc3hojdm5kdlgbg4peyvyi" style="color: black;">NeuroImage: Clinical</a> </i> &nbsp;
The results reveal good classification accuracy (range between 69% and 92.3%).  ...  The method, based on Support Vector Machines (SVMs) and Recursive Feature Elimination (RFE), is first trained for each experiment independently and each output is then combined to obtain a final classification  ...  Dimitri Van De Ville and Dr. Djalel Eddine Meskaldji for their helpful comments and insightful suggestions on some of the methodological aspects of this work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.nicl.2015.11.010">doi:10.1016/j.nicl.2015.11.010</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26793434">pmid:26793434</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4683429/">pmcid:PMC4683429</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/x5uc3mrnivet5cgbppya5sthf4">fatcat:x5uc3mrnivet5cgbppya5sthf4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171002003216/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/ad3/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMjIxMzE1ODIxNTMwMDI3OQ%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0b/b5/0bb58331660808f6b0e0bbbca048113815ef6fe4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.nicl.2015.11.010"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683429" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Inter-subject pattern analysis: A straightforward and powerful scheme for group-level MVPA

Qi Wang, Bastien Cagna, Thierry Chaminade, Sylvain Takerkart
<span title="2019-09-20">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
The alternative one, inter-subject pattern analysis, directly works at the group-level by using, e.g. a leave-one-subject-out cross-validation.  ...  We show that these two strategies uncover distinct significant regions with partial overlap, and that inter-subject pattern analysis is able to detect smaller effects and to facilitate the interpretation  ...  In this setting, obtaining an average classification accuracy -this time across folds of the cross-validation -significantly above chance level means that a multivariate effect has been identified and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.116205">doi:10.1016/j.neuroimage.2019.116205</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31546047">pmid:31546047</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ji2yem7igvbmtkuffkx4xuadcm">fatcat:ji2yem7igvbmtkuffkx4xuadcm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200313105932/https://hal.archives-ouvertes.fr/hal-02313840/document" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b0/69/b0696ca1f8b3c065a79e6acd04804feb57075699.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.116205"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

A Bayesian network to manage risks of maritime piracy against offshore oil fields

Amal Bouejla, Xavier Chaze, Franck Guarnieri, Aldo Napoli
<span title="">2014</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/q5373jvvvjahfp6h7ihnvmjjnq" style="color: black;">Safety Science</a> </i> &nbsp;
In recent years, pirate attacks against shipping and oil field installations have become more frequent and more serious.  ...  This article proposes an innovative solution to the problem of offshore piracy from the perspective of the entire processing chain: from the detection of a potential threat to the implementation of a response  ...  With these constraints in mind, a solution based on Bayesian networks was explored (Leray and al., 2008) .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ssci.2014.04.010">doi:10.1016/j.ssci.2014.04.010</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t6abtysuvrghlgw5quvigiya2e">fatcat:t6abtysuvrghlgw5quvigiya2e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190328082934/https://core.ac.uk/download/pdf/51225022.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/88/69/886929f3f349a7c2bf905f2861dab42a89ebd8ec.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.ssci.2014.04.010"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Decoding of single-trial auditory mismatch responses for online perceptual monitoring and neurofeedback

Alex Brandmeyer, Makiko Sadakata, Loukianos Spyrou, James M. McQueen, Peter Desain
<span title="">2013</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wrk3kouosrhcxiprcbguskdipu" style="color: black;">Frontiers in Neuroscience</a> </i> &nbsp;
Multivariate pattern classification methods are increasingly applied to neuroimaging data in the context of both fundamental research and in brain-computer interfacing approaches.  ...  of features and how the performance of these methods generalizes across individual participants and measurement sessions.  ...  , Culture and Science, and the Technology Foundation STW.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2013.00265">doi:10.3389/fnins.2013.00265</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24415996">pmid:24415996</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3874475/">pmcid:PMC3874475</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/n4zqocuaijfg3gh7mrhnqdby2a">fatcat:n4zqocuaijfg3gh7mrhnqdby2a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210427064103/https://repository.ubn.ru.nl/bitstream/handle/2066/122751/1/122751.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/af/0c/af0c3e97ddba40b5ddda33775f512fcfab649dee.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2013.00265"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874475" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Comprehending auditory speech: previous and potential contributions of functional MRI

Samuel Evans, Carolyn McGettigan
<span title="2017-01-09">2017</span> <i title="Informa UK Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ae2gtdr4eba6xpmeve2gu47jqy" style="color: black;">Language, Cognition and Neuroscience</a> </i> &nbsp;
Within this, we outline the methodological challenges of fMRI as a technique for investigating speech and describe the innovations that have overcome or mitigated these difficulties.  ...  We highlight the use of carefully controlled acoustic stimuli to reveal the underlying hierarchical organization of speech processing systems and cortical (a)symmetries, and discuss the contributions of  ...  Challenges and Solutions In some ways, it seems unlikely that fMRI would have superseded PET as the imaging modality of choice for researchers interested in localising speech comprehension networks.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1080/23273798.2016.1272703">doi:10.1080/23273798.2016.1272703</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/junwumjixrcorfih6fbgs3hkum">fatcat:junwumjixrcorfih6fbgs3hkum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190419040450/https://core.ac.uk/download/pdf/145645179.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fb/a9/fba9766ca487add71bbe4284ec9d985e863336fe.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1080/23273798.2016.1272703"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> tandfonline.com </button> </a>

Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls

Mohammad R. Arbabshirani, Sergey Plis, Jing Sui, Vince D. Calhoun
<span title="">2017</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
Using a variety of neuroimaging modalities such as structural, functional and diffusion MRI, along with machine learning techniques, hundreds of studies have been carried out for accurate classification  ...  Emerging big data technologies and advanced data-intensive machine learning methodologies such as deep learning have coincided with an increasing need for accurate, robust and generalizable single subject  ...  Acknowledgement This work was supported by National Institutes of Health grants P20GM103472, R01EB005846 and 1 ROl DA040487 (to V .D.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2016.02.079">doi:10.1016/j.neuroimage.2016.02.079</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27012503">pmid:27012503</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5031516/">pmcid:PMC5031516</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7kxm7yeugrgvdlxmitccneqxc4">fatcat:7kxm7yeugrgvdlxmitccneqxc4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210002651/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC5031516&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/e8/1ee87ea94c8b43897588fe03393178dcf95dc797.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2016.02.079"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031516" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Inter-subject pattern analysis for multivariate group analysis of functional neuroimaging. A unifying formalization [article]

Qi WANG, Thierry Artieres, Sylvain Takerkart
<span title="2020-08-31">2020</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
This work should contribute to popularize inter-subject pattern analysis for functional neuroimaging population studies and pave the road for future methodological innovations.  ...  In functional neuroimaging, an appealing solution to identify neural coding principles that hold at the population level is inter-subject pattern analysis, i.e. to learn a predictive model on data from  ...  Finally, we describe how it can offer a unifying framework for existing ISPA algorithms and we discuss several potential avenues to address the remaining methodological challenges raised by ISPA (Section  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.08.28.272153">doi:10.1101/2020.08.28.272153</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nb7rjiaognh47jf7iboqbhdctq">fatcat:nb7rjiaognh47jf7iboqbhdctq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201210063956/https://www.biorxiv.org/content/biorxiv/early/2020/08/31/2020.08.28.272153.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6a/76/6a76f5187b0651023350edb4998ba1b3e382f2d8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2020.08.28.272153"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

The spatiotemporal neural dynamics underlying perceived similarity for real-world objects

Radoslaw M. Cichy, Nikolaus Kriegeskorte, Kamila M. Jozwik, Jasper J.F. van den Bosch, Ian Charest
<span title="2019-03-17">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/sa477uo7lveh7hchpikpixop5u" style="color: black;">NeuroImage</a> </i> &nbsp;
As different object dimensions co-occur and partly correlate, to understand the relationship between perceived similarity and brain activity it is necessary to assess the unique role of multiple object  ...  We thus behaviorally assessed perceived object similarity in relation to shape, function, color and background.  ...  We thank Martin Hebart and Matthias Guggenmos for comments on the manuscript, and Seyed-Mahdi Khaligh-Razavi for support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.03.031">doi:10.1016/j.neuroimage.2019.03.031</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30894333">pmid:30894333</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6547050/">pmcid:PMC6547050</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sckd3wlxlvg3fkd2k4q6sharci">fatcat:sckd3wlxlvg3fkd2k4q6sharci</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210716025737/https://research.birmingham.ac.uk/portal/files/112656413/1_s2.0_S1053811919302083_main.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/56/b7/56b7ec1e60851ab44dd46b641d0f51ab6899240e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.neuroimage.2019.03.031"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6547050" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

fMRIflows: a consortium of fully automatic univariate and multivariate fMRI processing pipelines [article]

Michael Philipp Notter, Peer Herholz, Sandra Da Costa, Omer Faruk Gulban, Ayse Ilkay Isik, Micah M. Murray
<span title="2021-03-23">2021</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
such as fMRIPrep, FSL and SPM.  ...  Toolboxes, such as Nipype and fMRIPrep, have documented the need for and interest in automated analysis pipelines.  ...  Searchlight classification: The searchlight classification is performed for each subject individually and is based on the beta contrasts created during the 1 st -level analysis.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.03.23.436650">doi:10.1101/2021.03.23.436650</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5acg3vu6vnfgjof32bgpgqaa2q">fatcat:5acg3vu6vnfgjof32bgpgqaa2q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210715010824/https://www.biorxiv.org/content/biorxiv/early/2021/03/23/2021.03.23.436650.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3c/1b/3c1b48199ecf733344463d91ba54a4dd023956b8.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.03.23.436650"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Best practices in data analysis and sharing in neuroimaging using MRI

Thomas E Nichols, Samir Das, Simon B Eickhoff, Alan C Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P Milham, Russell A Poldrack, Jean-Baptiste Poline, Erika Proal, Bertrand Thirion (+3 others)
<span title="">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/lnbpt3q37zbs5nc5hp4wlttdwy" style="color: black;">Nature Neuroscience</a> </i> &nbsp;
best practice recommendations from experts and the entire brain imaging community.  ...  The open science movement is reshaping scientific culture and addressing the challenges of transparency and reproducibility of research.  ...  wholebrain classification methods.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4500">doi:10.1038/nn.4500</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28230846">pmid:28230846</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5685169/">pmcid:PMC5685169</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/76jlqlntrvfg7iz74anmuxreja">fatcat:76jlqlntrvfg7iz74anmuxreja</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180722123530/https://www.biorxiv.org/content/biorxiv/early/2016/07/10/054262.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f3/dd/f3ddd6051a35b9242f0f4d532a802fae3147f4fd.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1038/nn.4500"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> nature.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5685169" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Best Practices in Data Analysis and Sharing in Neuroimaging using MRI [article]

Thomas E. Nichols, Samir Das, Simon B. Eickhoff, Alan C. Evans, Tristan Glatard, Michael Hanke, Nikolaus Kriegeskorte, Michael P. Milham, Russell A. Poldrack, Jean-Baptiste Poline, Erika Proal, Bertrand Thirion (+3 others)
<span title="2016-05-20">2016</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
best practice recommendations from experts and the entire brain imaging community.  ...  The open science movement is reshaping scientific culture and addressing the challenges of transparency and reproducibility of research.  ...  wholebrain classification methods.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/054262">doi:10.1101/054262</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2id2ebomabgkvnyxmvetk6z5be">fatcat:2id2ebomabgkvnyxmvetk6z5be</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190427084406/https://www.biorxiv.org/content/biorxiv/early/2016/07/10/054262.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/eb/1a/eb1a50ade7ddd7904151a78a9ab473a02238da10.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/054262"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

A Hitchhiker's Guide to Functional Magnetic Resonance Imaging

José M. Soares, Ricardo Magalhães, Pedro S. Moreira, Alexandre Sousa, Edward Ganz, Adriana Sampaio, Victor Alves, Paulo Marques, Nuno Sousa
<span title="2016-11-10">2016</span> <i title="Frontiers Media SA"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wrk3kouosrhcxiprcbguskdipu" style="color: black;">Frontiers in Neuroscience</a> </i> &nbsp;
intrinsic methodological limitations) must be considered and addressed in order to optimize fMRI analysis and to arrive at the most accurate and grounded interpretation of the data.  ...  However, multiple technical considerations (ranging from specifics of paradigm design to imaging artifacts, complex protocol definition, and multitude of processing and methods of analysis, as well as  ...  For all these reasons, drawing significant conclusions about mental states from fMRI data is challenging at best and the use of classification and predictive models such as machine learning algorithms  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2016.00515">doi:10.3389/fnins.2016.00515</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27891073">pmid:27891073</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5102908/">pmcid:PMC5102908</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/buiu2rijybf2rizrz3tkmwbtgq">fatcat:buiu2rijybf2rizrz3tkmwbtgq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171007140608/http://publisher-connector.core.ac.uk/resourcesync/data/Frontiers/pdf/bc1/aHR0cDovL2pvdXJuYWwuZnJvbnRpZXJzaW4ub3JnL2FydGljbGUvMTAuMzM4OS9mbmlucy4yMDE2LjAwNTE1L3BkZg%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d8/e2/d8e2bad4290d39e5a62c7fa0835552cb38e28054.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3389/fnins.2016.00515"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> frontiersin.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5102908" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

inTIME: A Machine Learning-Based Framework for Gathering and Leveraging Web Data to Cyber-Threat Intelligence

Paris Koloveas, Thanasis Chantzios, Sofia Alevizopoulou, Spiros Skiadopoulos, Christos Tryfonopoulos
<span title="2021-03-30">2021</span> <i title="MDPI AG"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ikdpfme5h5egvnwtvvtjrnntyy" style="color: black;">Electronics</a> </i> &nbsp;
To the best of our knowledge, this is the first solution in the literature to provide an end-to-end cyber-threat intelligence management platform that is able to support the complete threat lifecycle via  ...  In today's world, technology has become deep-rooted and more accessible than ever over a plethora of different devices and platforms, ranging from company servers and commodity PCs to mobile phones and  ...  Acknowledgments: We would like to thank our colleagues in Mathema S.R.L. for implementing part of the UI of the platform, and especially Emanuele Bellini and Simone Naldini for the technical and Alessandro  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/electronics10070818">doi:10.3390/electronics10070818</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/iegvfymfj5f7nbrdasqzcc2t6e">fatcat:iegvfymfj5f7nbrdasqzcc2t6e</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210401042935/https://res.mdpi.com/d_attachment/electronics/electronics-10-00818/article_deploy/electronics-10-00818-v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4b/eb/4beb742ced5cdec2067fefe3a7af1e020b895c36.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3390/electronics10070818"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> mdpi.com </button> </a>

Good practice in food-related neuroimaging

Paul A M Smeets, Alain Dagher, Todd A Hare, Stephanie Kullmann, Laura N van der Laan, Russell A Poldrack, Hubert Preissl, Dana Small, Eric Stice, Maria G Veldhuizen
<span title="2019-03-05">2019</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xrdm7tm6kzdl7kbhsmmrmk2yxy" style="color: black;">American Journal of Clinical Nutrition</a> </i> &nbsp;
In this article, we present guidelines for good methodological practice in functional magnetic resonance imaging studies and flag specific limitations in the hope of helping researchers to make the most  ...  of neuroimaging tools and avoid potential pitfalls.  ...  All authors designed and wrote the paper. PAMS had primary responsibility for final content. All authors read and approved the final manuscript.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/ajcn/nqy344">doi:10.1093/ajcn/nqy344</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30834431">pmid:30834431</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/dwa4pnprzvgjdocwzslzpgbi4u">fatcat:dwa4pnprzvgjdocwzslzpgbi4u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200711093658/https://edepot.wur.nl/473274" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/01/ec/01ec3920a4ab966a8db0eef980bfcebcdaf38034.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/ajcn/nqy344"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>
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