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Coordinated regulation of acid resistance in Escherichia coli

Patricia Aquino, Brent Honda, Suma Jaini, Anna Lyubetskaya, Krutika Hosur, Joanna G. Chiu, Iriny Ekladious, Dongjian Hu, Lin Jin, Marianna K. Sayeg, Arion I. Stettner, Julia Wang (+57 others)
2017 BMC Systems Biology  
Enteric Escherichia coli survives the highly acidic environment of the stomach through multiple acid resistance (AR) mechanisms.  ...  Our data demonstrate that nac and csiR directly modulate AR, and leads to a regulatory network model in which all four TFs participate in coordinating acid resistance, glutamate metabolism, and nitrogen  ...  Acknowledgements The authors gratefully acknowledge the support of Dan Harkness. We thank the Wadsworth Center Applied Genomic Technologies Core Facility for Sanger sequencing.  ... 
doi:10.1186/s12918-016-0376-y pmid:28061857 pmcid:PMC5217608 fatcat:rdza7oajlrh77btkflyhfe7byq

Subject index vol. 24 (1984)

1984 FEMS Microbiology Letters  
growth and development 247 ammonium, assimilation, glutamate synthase, nitrogen fixation, defective mutant, Rhizobiumjaponicum, 241 anaerobiosis, Escherichia coli, number of regulated genes, 251 antibiotic  ...  spent media, fermentation products, gas chromatography, 307 aminoglycoside antibiotic, production, Micromonospora sp., ribosomal resistance, 273 a-aminoisobutyric acid, Serpula lacrimans, inhibition of  ...  human urine, 255 outer membrane vesicle, Escherichia coli, binding of para- magnetic metal cation, 43 oxalic acid, production, Sclerotinia sclerotiorum, role in patho- genesis, 9 oxygen, peroxide,  ... 
doi:10.1111/j.1574-6968.1984.tb01336.x fatcat:rhnb7ljysjg7lavglslwrlk4cm

The AraC-family regulator GadX enhances multidrug resistance in Escherichia coli by activating expression of mdtEF multidrug efflux genes

Kunihiko Nishino, Yasuko Senda, Akihito Yamaguchi, Kunihiko Nishino, Akihito Yamaguchi, Kunihiko Nishino, Akihito Yamaguchi
2008 Journal of Infection and Chemotherapy  
Key words Escherichia coli · GadX · MdtEF · Effl ux pump · Multidrug resistance and aids the gastric passage of commensal strains. 28,29 One of the most effi cient acid resistance systems in E. coli, the  ...  to multidrug resistance as well as acid resistance in E. coli.  ... 
doi:10.1007/s10156-007-0575-y pmid:18297445 fatcat:q34szqqhsjeaxay27mxlyzq5gi

Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica

I. Zwir, D. Shin, A. Kato, K. Nishino, T. Latifi, F. Solomon, J. M. Hare, H. Huang, E. A. Groisman
2005 Proceedings of the National Academy of Sciences of the United States of America  
This work was supported in part by National Institutes of Health Grant AI49561 (to E.A.G.). E.A.G. is an investigator of the Howard Hughes Medical Institute.  ...  The PhoP͞PhoQ system controls acid resistance genes in Escherichia coli.  ...  We established that the PhoP͞PhoQ system controls expression of acid resistance genes in Escherichia coli.  ... 
doi:10.1073/pnas.0408238102 pmid:15703297 pmcid:PMC548500 fatcat:h3wosa6cwfgrxkwuf2qfogm6fa

Location of gyrA on the physical map of the Escherichia coli chromosome.:

G Webb, K Rohatgi, J B Courtright
1990 Journal of Bacteriology  
Quinolone-resistant mutations of the gyrA gene of Escherichia coli. Mol. Gen.  ...  Regulation of ubiG expression in Escherichia coli. J. Bacteriol. 170 :1346-1349. 3 . Jenkins, L. S., and W. D. Nunn. 1987 .  ... 
doi:10.1128/jb.172.12.6617.1990 pmid:2254240 pmcid:PMC210769 fatcat:2wau2lmisbbldnaouj6zduvh24

The Small Noncoding DsrA RNA Is an Acid Resistance Regulator in Escherichia coli

R. A. Lease, D. Smith, K. McDonough, M. Belfort
2004 Journal of Bacteriology  
E. coli K-12 strains, as well as pathogenic E. coli O157:H7, exhibited compromised acid resistance in dsrA mutants.  ...  Conversely, overproduction of DsrA from a plasmid rendered the acid-sensitive dsrA mutant extremely acid resistant. Thus, DsrA RNA plays a regulatory role in acid resistance.  ...  We appreciate the services of the Wadsworth Center Molecular Genetics and Genomics Core Facil-ities. Sarah Woodson provided laboratory resources, as well as valuable comments on the manuscript.  ... 
doi:10.1128/jb.186.18.6179-6185.2004 pmid:15342588 pmcid:PMC515158 fatcat:snyynb5gwbcvpjfdljwur6g5u4

Linkage Map of Escherichia coli K-12, Edition 10: The Traditional Map

Mary K. B. Berlyn
1998 Microbiology and Molecular Biology Reviews  
., Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 2, 1996).  ...  This map is an update of the edition 9 map by Berlyn et al. (M. K. B. Berlyn, K. B. Low, and K. E. Rudd, p. 1715–1902, in F. C.  ...  Regulation of the biosynthesis of aminoacyl-transfer ribonucleic acid synthetases and of transfer-ribonucleic acid in Escherichia coli. V.  ... 
doi:10.1128/mmbr.62.3.814-984.1998 fatcat:3hvwlshlnfcr7bn4okkrpchy5a

Antibacterial Resistance of Escherichia coli from Rectal Swabs of Synanthropic Rodents Trapped from Household Compounds in Wolaita Zone, Southern Ethiopia

2019 International Journal of Research Studies in Biosciences  
Objective: This study was aimed to test antibacterial resistance of Escherichia coli from rectal swabs of synanthropic rodents in Wolaita Zone, Southern Ethiopia.  ...  Complete resistance to amoxicillin and Amoxicillinclavunic acid was observed in the E.coli isolates.  ...  In this study all amoxacillin and cloxacillin resistant E. coli were also resistant to amoxicillin-clavulanic acid.  ... 
doi:10.20431/2349-0365.0701004 fatcat:okmtkbnumrfgronzz4uau5g7va

The Legacy of Genetic Analysis Advances Contemporary Research with Escherichia coli K-12 and Salmonella enterica serovar Typhimurium LT2

Valley Stewart
2017 EcoSal Plus  
Updates of map information are available in electronic form from several sites. These include the World Wide Web server for the E. coli Genetic Stock Center (CGSC) at URL  ...  As in previous editions of the E. coli linkage map, an asterisk indicates that the gene is not precisely located with respect to near neighbors and parentheses indicate that the location is even more uncertain  ...  We thank Amos Bairoch and Bobby Baum for information and helpful comments regarding Table 1 . this chapter continues the tradition of E. coli K-12 linkage map editions so capably constructed by Barbara  ... 
doi:10.1128/ecosalplus.esp-0014-2016 pmid:28443537 fatcat:mjfjktbwwbdn5pamq34uxlrc54

Role of the AraC–XylS family regulator YdeO in multi-drug resistance of Escherichia coli

Kunihiko Nishino, Yasuko Senda, Mitsuko Hayashi-Nishino, Akihito Yamaguchi
2009 Journal of antibiotics (Tokyo. 1968)  
Our results indicate that the YdeO regulator, in addition to its role in acid resistance, increases the multi-drug resistance of E. coli by activating the MdtEF multi-drug efflux pump.  ...  Multi-drug efflux pumps contribute to the resistance of Escherichia coli to many antibiotics and biocides.  ...  Fundamental Studies in Health Sciences of the National Institute of Biomedical Innovation (AY and KN); a grant from the Ministry of Education, Culture, Sports, Science and Technology of Japan (KN); a  ... 
doi:10.1038/ja.2009.23 pmid:19329985 fatcat:avmn66xce5azpoarj47eekqmui

Comparative sequence analysis of acid sensitive/resistance proteins in Escherichia coli and Shigella flexneri

Selvaraj Manikandan, Seetharaaman Balaji, Anil Kumar, Rita kumar
2007 Bioinformation  
A preliminary study was carried out to determine residue pattern conservation among the antiporters of enteric bacteria, responsible for extreme acid sensitivity especially in Escherichia coli and Shigella  ...  Phylogenetic cluster analysis proves the relationship of Escherichia coli and Shigella flexneri.  ...  The strong motif conservation could be the reason for the extreme acid resistance of E. coli and S. flexneri. Our pattern analysis shows the relationship of Escherichia coli and Shigella flexneri.  ... 
doi:10.6026/97320630002145 pmid:21670792 pmcid:PMC2255067 fatcat:t5mvs6k6jnfwrgecrdmtcdpziu

Functions of the gene products of Escherichia coli

M Riley
1993 Microbiological reviews  
Contribution of the fnr and arcA gene products in coordinate regulation of cytochrome o and d oxidase (cyoABCDE and cydAB) genes in Escherichia coli. FEMS Microbiol.  ...  Regulation of the biosynthesis of aminoacyl-transfer ribonucleic acid synthetases and the transfer ribonucleic acid in Escherichia coli. VI.  ... 
doi:10.1128/mmbr.57.4.862-952.1993 fatcat:ufrvcnmevvapfdskcvbmgfk4lq

Expression of bvgAS of Bordetella pertussis represses flagellar biosynthesis of Escherichia coli

Y. W. Han, M. A. Uhl, Seog Joon Han, W. Shi
1999 Archives of Microbiology  
In this study, we found that expression of bvgAS in Escherichia coli also results in reduced motility.  ...  However, expression of BvgAS had no effect on stress-resistant motile mutants of E. coli.  ...  BvgA and BvgS constitute a two-component system of Bordetella that is involved in the coordinate regulation of the virulence factors in response to various environmental signals [for a review, see Uhl  ... 
doi:10.1007/s002030050688 pmid:9914310 fatcat:nxff5hpmh5aprmzogttn77od6i

Insights into Emergence of Antibiotic Resistance in Acid-Adapted Enterohaemorrhagic Escherichia coli

Salma Waheed Sheikh, Ahmad Ali, Asma Ahsan, Sidra Shakoor, Fei Shang, Ting Xue
2021 Antibiotics  
The water and foodborne Enterohaemorrhagic Escherichia coli (EHEC) are capable of causing intestinal and systemic diseases.  ...  In this review, we have discussed the correlation between acid tolerance and antibiotic resistance, highlighting the identification of novel targets for potential production of antimicrobial therapeutics  ...  in Escherichia coli.  ... 
doi:10.3390/antibiotics10050522 pmid:34063307 pmcid:PMC8147483 fatcat:az6v3wkpizdp3nbvxgj2jqddwi

Genetic and physical mapping of the regulatory gene csrA on the Escherichia coli K-12 chromosome

T Romeo, M Gong
1993 Journal of Bacteriology  
Glycogen synthesis in Escherichia coli is one of a number of metabolic pathways that are induced in the stationary phase (for reviews, see references 4 and 5).  ...  We have recently identified an Escherichia coli K-12 gene that encodes a trans-acting negative regulator of glycogen biosynthesis, csrA (carbon storage regulator) (8) .  ... 
doi:10.1128/jb.175.17.5740-5741.1993 pmid:8366066 pmcid:PMC206644 fatcat:iiv7qljtu5fpjp5xy6d4tg4e7m
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