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Converting Alzheimer's Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data [chapter]

Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot
2018 Lecture Notes in Computer Science  
We introduce the AD Map Ontology (ADMO), an ontological upper model based on systems biology terms. We then propose to convert AlzPathway into an ontology and to integrate it into ADMO.  ...  AlzPathway is a disease map that gives a detailed and broad account of AD pathophysiology. However, AlzPathway lacks formalism, which can lead to ambiguity and misinterpretation.  ...  The research leading to these results has received funding from the program "Investissements d'avenir" ANR-10-IAIHU-06 (Agence Nationale de la Recherche-10-IA Institut Hospitalo-Universitaire-6) and from  ... 
doi:10.1007/978-3-030-06016-9_20 fatcat:ayjfnrnkwvex5jz2pnhf5q7afm

Converting Alzheimer s disease map into a heavyweight ontology: a formal network to integrate data [article]

Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot
2018 arXiv   pre-print
We introduce the AD Map Ontology (ADMO) an ontological upper model based on systems biology terms. We then propose to convert AlzPathway into an ontology and to integrate it into ADMO.  ...  AlzPathway is a disease map that gives a detailed and broad account of AD pathophysiology. However, AlzPathway lacks formalism, which can lead to ambiguity and misinterpretation.  ...  The research leading to these results has received funding from the program "Investissements d'avenir" ANR-10-IAIHU-06 (Agence Nationale de la Recherche-10-IA Institut Hospitalo-Universitaire-6) and from  ... 
arXiv:1807.10509v1 fatcat:ow45axqhbbgyxb6utebzdo7pqm

Reuse of termino-ontological resources and text corpora for building a multilingual domain ontology: An application to Alzheimer's disease

Khadim Dramé, Gayo Diallo, Fleur Delva, Jean François Dartigues, Evelyne Mouillet, Roger Salamon, Fleur Mougin
2014 Journal of Biomedical Informatics  
These validated results are formalized into a domain ontology dedicated to Alzheimer's disease and related syndromes which is available online (http://lesim.isped.u-bordeaux2.fr/SemBiP/ressources/ontoAD.owl  ...  In this paper, we present a method for building a bilingual domain ontology from textual and termino-ontological resources intended for semantic annotation and information retrieval of textual documents  ...  It provides a procedure for converting these knowledge resources into ontologies using Word-Net 6 to acquire explicit relationships.  ... 
doi:10.1016/j.jbi.2013.12.013 pmid:24382429 fatcat:offalcmdubfkhe5rrdi6rzfsfa

A Process and Tool Support for Human-Centred Ontology Verification

Klemens Käsznar, Reka Marta Sabou, Fajar Juang Ekaputra
2022
However, a systematic mapping study in this area shows that the process of using HC to solve human-centred ontology verification (i) is not well understood as there is no reference process that is widely  ...  Fourth, a case study evaluates the created artefacts to understand to what extent the preparation of human-centred ontology verification can be supported.  ...  Acknowledgements First and foremost, I would like to express my sincere gratitude to my supervisor Marta Sabou.  ... 
doi:10.34726/hss.2022.97603 fatcat:jqo4a2gs35cpnmqz7ggxcexn5u

Semantic annotation of clini-cal text: The clef corpus

Eric Curea, George Tsatsaronis, Michael Schroeder, Georgios Paliouras, Yannis Almirantis, Ion Androutsopoulos, Eric Gaussier, Patrick Gallinari, Thierry Artieres, Michael Alvers, Matthias Zschunke, Maria Mitrofan (+21 others)
2017 Proceedings of the Biomedical NLP Workshop associated with RANLP 2017   unpublished
Further Acknowledgements go to our students, that implemented parts of the system, along with a user interface for practical usage of the system in the Hannover Medical School hospital.  ...  Acknowledgements We would like to thank our colleagues from the Hannover Medical School to suggest the problem of extracting numerical values and making available the pseudonymized texts.  ...  Hence we will integrate a preprocessing step that converts textual definitions of numbers in real numbers.  ... 
fatcat:z4dkux7tingspnyxebzeokavci

Semantic annotation of clini-cal text: The clef corpus

Eric Curea, George Tsatsaronis, Michael Schroeder, Georgios Paliouras, Yannis Almirantis, Ion Androutsopoulos, Eric Gaussier, Patrick Gallinari, Thierry Artieres, Michael Alvers, Matthias Zschunke, Maria Mitrofan (+21 others)
2017 Proceedings of the Biomedical NLP Workshop associated with RANLP 2017   unpublished
Further Acknowledgements go to our students, that implemented parts of the system, along with a user interface for practical usage of the system in the Hannover Medical School hospital.  ...  Acknowledgements We would like to thank our colleagues from the Hannover Medical School to suggest the problem of extracting numerical values and making available the pseudonymized texts.  ...  Hence we will integrate a preprocessing step that converts textual definitions of numbers in real numbers.  ... 
fatcat:ee5v3e5hjzhgdmfxrwfadvaedi

Intensive Labours, Expansive Visions: Emerging ideals of the ethical subject amidst the rise of cognitive neuroscience [article]

Matthew Wade, University, The Australian National, University, The Australian National
2016
Such calls for a new ontology of ethics, I argue, amounts to overly 'expansive' claims funnelled through increasingly 'intensive' gazes.  ...  Advocates of this position urge us to embrace methods of cognitive and moral 'enhancement,' lest we find ourselves unfit for the future in a world of ever-escalating risk.  ...  enabling the user to integrate data from a 'Fitbit' device (a self-tracking device typically used to measure aerobic fitness).  ... 
doi:10.25911/5d778b1e54205 fatcat:ihknn6ch7jat3as7frf3kuca3y

Digitising the Industry Internet of Things Connecting the Physical, Digital and Virtual Worlds RIVER PUBLISHERS SERIES IN COMMUNICATIONS Volume 49 Series Editors

Abbas Jamalipour, Marina Ruggieri
unpublished
IoT applications and deployments as integrated building blocks of the new digital economy are part of the accompanying IoT policy framework, which exists to address issues of a horizontal nature and common  ...  This is intended to be a standalone book in a series that covers the IoT activities of the IERC (Internet of Things European Research Cluster), from research to technological innovation, validation and  ...  The authors would like in particular to thank: • The reviewers: Georgios Karagiannis, Patrick Wetterwald  ... 
fatcat:imjejd3tbrerfiefoktoxahqci