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Controllable and Progressive Edge Clustering for Large Networks [chapter]

Huamin Qu, Hong Zhou, Yingcai Wu
<i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5ak5rq4e6bb7hlzdywrwpxjkzi" style="color: black;">Graph Drawing</a> </i> &nbsp;
We further introduce progressive edge clustering to achieve continuous level-of-details for large networks.  ...  In this paper, we propose a novel controllable edge clustering method based on Delaunay triangulation to reduce visual clutter for node-link diagrams.  ...  We would like to thank the anonymous reviewers for their valuable comments.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-70904-6_38">doi:10.1007/978-3-540-70904-6_38</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/gd/QuZW06.html">dblp:conf/gd/QuZW06</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/suun2kir3ng7dllxksjdxpx5j4">fatcat:suun2kir3ng7dllxksjdxpx5j4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809185314/http://www.cse.ust.hk/~huamin/qu_gd06.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/52/ee/52eea2f3691ea6b12db9c625227829e466b8d5c0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-70904-6_38"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer's disease

Yurika Upadhyaya, Linhui Xie, Paul Salama, Sha Cao, Kwangsik Nho, Andrew J. Saykin, Jingwen Yan, for the Alzheimer's Disease Neuroimaging In
<span title="2020-04-03">2020</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rbtzjpig4jcsfbjr5yo23sjnj4" style="color: black;">BMC Medical Genomics</a> </i> &nbsp;
For co-expression change during AD progression, there are 66 pairs of genes that demonstrated a continuously decreasing or increasing co-expression from CN to EMCI, LMCI and AD.The network level clustering  ...  We employed a modified joint graphical lasso for estimation of co-expression networks for multiple stages of AD.  ...  For example, co-expression networks in CN group and EMCI group are expected to be largely similar with critical differences.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12920-020-0689-y">doi:10.1186/s12920-020-0689-y</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32241275">pmid:32241275</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/oycddtw2jzbn5arcfdbdnnvttm">fatcat:oycddtw2jzbn5arcfdbdnnvttm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200404002731/https://bmcmedgenomics.biomedcentral.com/track/pdf/10.1186/s12920-020-0689-y" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/6e/c5/6ec5a448e6c41591743cd6fd3f408e632a14152f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12920-020-0689-y"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

MatrixFlow: temporal network visual analytics to track symptom evolution during disease progression

Adam Perer, Jimeng Sun
<span title="2012-11-03">2012</span> <i title="American Medical Informatics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/g6q27b56yzeupjryv6lby2r2pa" style="color: black;">AMIA Annual Symposium Proceedings</a> </i> &nbsp;
MatrixFlow is applied to visualize heart failure (HF) symptom events extracted from a large cohort of HF cases and controls (n=50,625), which allows medical experts to reach insights involving temporal  ...  To develop a visual analytic system to help medical professionals improve disease diagnosis by providing insights for understanding disease progression.  ...  makes comparing networks across time easier, and 3) a natural technique for representing edges that represent values.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23304345">pmid:23304345</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3540494/">pmcid:PMC3540494</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zyhejqtmxraqxozbzpx2eolatu">fatcat:zyhejqtmxraqxozbzpx2eolatu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191114152638/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3540494&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/23/08/2308908d46699bdbec9460ea1139834718858c93.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540494" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Topology control algorithms for wireless sensor networks

Yannis Manolopoulos, Dimitrios Katsaros, Alexis Papadimitriou
<span title="">2010</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/pul7f2ro35d2tj5dn4pz327hiy" style="color: black;">Proceedings of the 11th International Conference on Computer Systems and Technologies and Workshop for PhD Students in Computing on International Conference on Computer Systems and Technologies - CompSysTech &#39;10</a> </i> &nbsp;
This article surveys the most popular and efficient topology control algorithms for wireless ad hoc sensor networks.  ...  This is, however, not beneficial; high transmission power requires lots of energy, many neighbours are a burden for a MAC protocol, and routing protocols suffer from volatility in the network when nodes  ...  Communities are detected by progressively removing edges from the original graph, rather than by adding the strongest edges to an initially empty network.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1839379.1839381">doi:10.1145/1839379.1839381</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/compsystech/ManolopoulosKP10.html">dblp:conf/compsystech/ManolopoulosKP10</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2i64otf7ynfqvnbdthf6kkryo4">fatcat:2i64otf7ynfqvnbdthf6kkryo4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180219010512/http://inf-server.inf.uth.gr:80/~dkatsar/papers/CompSysTech10mkp.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f6/87/f6871cc02731b8451e6fa45e80b7b0e2fc731344.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1839379.1839381"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats

Xinrong Zhou, Katsuhisa Horimoto, Shigeru Saito, Luonan Chen, Huarong Zhou
<span title="">2012</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/z6uaxyq6pzegheqobcojcfebti" style="color: black;">2012 IEEE 6th International Conference on Systems Biology (ISB)</a> </i> &nbsp;
For this purpose, we performed network clustering by the Newman algorithm for the regulatory networks inferred by a modified path consistency algorithm, and investigated the biological functions of each  ...  diabetes progression, under the control of various transcriptional regulators.  ...  Network Clustering In networks, the vertices are often clustered into tightly knit groups, with a high density of within-group edges and a lower density of between-group edges.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/isb.2012.6314117">doi:10.1109/isb.2012.6314117</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/isb/ZhouHSCZ12.html">dblp:conf/isb/ZhouHSCZ12</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ips6jkwkyneandi7p6dqdqjzim">fatcat:ips6jkwkyneandi7p6dqdqjzim</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811221205/http://www.aporc.org/ISB/2012/Proceedings/Papers/ISB2012F15.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f0/ad/f0ad9041b2c7eda49162df439c888db985c95dce.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/isb.2012.6314117"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Characterization of Cluster Structures in Material Flow Networks: A Network Approach

Darja Wagner, Till Becker
<span title="">2016</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/kcayf4mk7zbrbhvdwizgrxaruu" style="color: black;">Procedia Technology - Elsevier</a> </i> &nbsp;
Following, the aim of this paper is the structural characterization of clusters of material flow networks to support the introduction of decentralized control.  ...  Therefore, present production planning and control is required to react quickly and flexibly to this increasing dynamics.  ...  There is a large number of different algorithms for the identification of cluster in complex networks.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.protcy.2016.08.037">doi:10.1016/j.protcy.2016.08.037</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/emvydysjsbdudcnxdgcyjrjzoy">fatcat:emvydysjsbdudcnxdgcyjrjzoy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170926214728/http://publisher-connector.core.ac.uk/resourcesync/data/elsevier/pdf/45d/aHR0cDovL2FwaS5lbHNldmllci5jb20vY29udGVudC9hcnRpY2xlL3BpaS9zMjIxMjAxNzMxNjMwMzg0eA%3D%3D.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/bc/49/bc49fabf9c2808491c0b3e1811581f3b5adb28ac.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.protcy.2016.08.037"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a>

Gene Network Rewiring to Study Melanoma Stage Progression and Elements Essential for Driving Melanoma

Abhinav Kaushik, Yashuma Bhatia, Shakir Ali, Dinesh Gupta, Roger Chammas
<span title="2015-11-11">2015</span> <i title="Public Library of Science (PLoS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a> </i> &nbsp;
We found that the shortlisted disease genes in the study show strong and abnormal network connectivity, which enhances with the disease progression.  ...  Intriguingly, a majority of the melanoma network-rewired genes are not differentially expressed and the disease genes involved in melanoma progression consistently modulate its activity by rewiring network  ...  Multi-edge rewiring in melanoma progression For elucidation of aberrantly networked genes, network connectivity rewiring analysis was performed for a stage-wise assessment of the edge rewiring.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0142443">doi:10.1371/journal.pone.0142443</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26558755">pmid:26558755</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4641706/">pmcid:PMC4641706</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/newkh54awbhb3djlmvcovnqjnm">fatcat:newkh54awbhb3djlmvcovnqjnm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171011091133/http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0142443&amp;type=printable" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3c/2d/3c2d2e589d74ba62963c4d14ace39176083fb94e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pone.0142443"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> plos.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4641706" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Disrupted brain network topology in Parkinson's disease: a longitudinal magnetoencephalography study

Kim T. E. Olde Dubbelink, Arjan Hillebrand, Diederick Stoffers, Jan Berend Deijen, Jos W. R. Twisk, Cornelis J. Stam, Henk W. Berendse
<span title="2013-11-22">2013</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3yly6om4ynhcta4fdjenhrdk5y" style="color: black;">Brain</a> </i> &nbsp;
We observed that brain networks in early stage untreated patients displayed lower local clustering with preserved path length in the delta frequency band in comparison to controls.  ...  We characterized whole-brain functional networks by means of a standard graph analysis approach, measuring clustering coefficient and shortest path length, as well as the construction of a minimum spanning  ...  Acknowledgements We thank all patients and controls for their participation. We also thank K.D. van Dijk for her help in clinical (Unified Parkinson's Disease Rating Scale motor ratings) testing.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/brain/awt316">doi:10.1093/brain/awt316</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24271324">pmid:24271324</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/65muewyumna5zkly65uwgbzxgq">fatcat:65muewyumna5zkly65uwgbzxgq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190304063524/http://pdfs.semanticscholar.org/c261/0ac8fc70252cdf9156c32bcdc98399047d7a.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c2/61/c2610ac8fc70252cdf9156c32bcdc98399047d7a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/brain/awt316"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma

Shigeru Saito, Masao Honda, Shu-ichi Kaneko, Katsuhisa Horimoto
<span title="">2009</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wjd7b2sxyfahnaei4xvi46vwsu" style="color: black;">Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference</a> </i> &nbsp;
Thus, the present procedure is a useful method to model the network structure changes in the cell stage progression, and to clarify the gene candidates for the progression.  ...  As a result, the chain model of the 18 gene cluster relationships with strong associations was inferred, in which the coordination of clusters was described in the cell stage progression, and the gene-gene  ...  O Joint 48th IEEE Conference on Decision and Control and 28th Chinese Control Conference Shanghai, P.R.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cdc.2009.5400061">doi:10.1109/cdc.2009.5400061</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/cdc/SaitoHKH09.html">dblp:conf/cdc/SaitoHKH09</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t6kkhphs5zcz5isaw3oclt2fwe">fatcat:t6kkhphs5zcz5isaw3oclt2fwe</a> </span>
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Exploration of Functional Vulnerability of the Electricity Grid

A.B.M. Nasiruzzaman, H.R. Pota, Most. Nahida Akter, Md. Apel Mahmud
<span title="">2014</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p3wtlm3j2fedxitkuu4bs3scau" style="color: black;">IFAC Proceedings Volumes</a> </i> &nbsp;
Inclusion of communication networks, to facilitate data transfer for ensuring reliability and security of the power system, with the electricity network extends the complexity to a new scale in a contemporary  ...  Any error in the integrated communication network can propagate through the electricity grid initiating large-scale cascading outages.  ...  chain of events and the grid behaves destructively and finally when situations go out of control large scale blackouts occur.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3182/20140824-6-za-1003.01087">doi:10.3182/20140824-6-za-1003.01087</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2hp4c4aicbbtpdbkrv6yq47i6a">fatcat:2hp4c4aicbbtpdbkrv6yq47i6a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200710075644/https://folk.ntnu.no/skoge/prost/proceedings/ifac2014/media/files/1087.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3c/86/3c86df387d5ee56d7ef6d2a0cd6da58afac62afb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3182/20140824-6-za-1003.01087"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

An on-demand scaling stereoscopic 3D video streaming service in the cloud

Maximilian Hoecker, Marcel Kunze
<span title="">2013</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/t5xopidd6nfk7cgyceba77n2xe" style="color: black;">Journal of Cloud Computing: Advances, Systems and Applications</a> </i> &nbsp;
The system architecture consists of a stream provider that leverages highly scalable and reliable cloud computing and storage services, with automatic load balancing capability for live and content streaming  ...  We describe a web service providing a complete stereoscopic 3D video multi-stream cloud application to serve a potentially very large number of clients over the Internet.  ...  In Figure 5 the graph shows an analogue behavior for instance type "c1.xlarge" and "m1.large".  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2192-113x-2-14">doi:10.1186/2192-113x-2-14</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xml4ljbe5bcndloctqfbnt4nf4">fatcat:xml4ljbe5bcndloctqfbnt4nf4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170810070830/https://journalofcloudcomputing.springeropen.com/track/pdf/10.1186/2192-113X-2-14?site=journalofcloudcomputing.springeropen.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/27/31/273122c4194be7351ce88503d6803e07b99c1843.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/2192-113x-2-14"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Visual Analytics: Leveraging Cognitive Principles to Accelerate Biomedical Discoveries [chapter]

Suresh K. Bhavnani
<span title="">2015</span> <i title="Springer International Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2h7n53gbg5h5fgc5nze6ha3zte" style="color: black;">Health Informatics Series</a> </i> &nbsp;
Acknowledgements I thank Shyam Visweswaran, Rohit Divekar, and Bryant Dang for their contributions to this chapter.  ...  This research was supported in part by NIH CTSA #UL1TR000071, the Institute for Human Infections and Immunity at UTMB, the Rising Star Award from University of Texas Systems, and CDC/NIOSH #R21OH009441  ...  Finally, there were four cases (triangles and diamonds) that were clustered with the controls at the bottom of the network.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-17272-9_14">doi:10.1007/978-3-319-17272-9_14</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uvdsgrnlmnffponl4kr2xadpji">fatcat:uvdsgrnlmnffponl4kr2xadpji</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20160518221317/http://www.skbhavnani.com:80/DIVA/papers/Bhavnani-CIB-Chapter-2015.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c8/7b/c87b62a62cc03e2ee6226e0c8793247f09902f65.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-17272-9_14"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Rigidity percolation control of the brittle-ductile transition in disordered networks [article]

Estelle Berthier, Jonathan E. Kollmer, Silke E. Henkes, Kuang Liu, Jennifer M. Schwarz, Karen E. Daniels
<span title="2018-12-18">2018</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
for floppy networks containing nonspanning rigid clusters.  ...  We find that the transition corresponds to the isostatic value 〈 z 〉 = 3 in the large-friction limit, with brittle failure occurring for structures vertically spanned by a rigid cluster, and ductile failure  ...  Author contributions: J.E.K. performed the granular experiments and extracted the force chain networks; E.B. created the lattices and performed, pro-  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1812.07466v1">arXiv:1812.07466v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ovnig35g5bbvtlytvx7a7gr6ny">fatcat:ovnig35g5bbvtlytvx7a7gr6ny</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200904184816/https://arxiv.org/pdf/1812.07466v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/40/7140e8a820fad4e3b19f47ff7a72880083e9518a.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1812.07466v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Relating Connectivity and Graph Analysis to Cognitive Function in Alzheimer's Disease

Hunter C. Gits
<span title="2016-04-01">2016</span> <i title="University of Michigan Library"> Michigan Journal of Medicine </i> &nbsp;
Conclusion and Relevance: Graph analysis comprehensively describes brain network changes, and in the future, both researchers and clinicians could employ its techniques to better understand and treat Alzheimer's  ...  Graph analysis is an emerging technique that describes networks in terms of different properties, and the concepts may be applied readily to human brain networks.  ...  Acknowledgments The author would like to thank JJG Geurts, MM Schoonheim, and AM Wink for their support and revision of an earlier version of this work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3998/mjm.13761231.0001.111">doi:10.3998/mjm.13761231.0001.111</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uut537zeybbdldzdy33fpabqte">fatcat:uut537zeybbdldzdy33fpabqte</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180719123505/https://quod.lib.umich.edu/cgi/p/pod/dod-idx/relating-connectivity-and-graph-analysis-to-cognitive.pdf?c=mjm;idno=13761231.0001.111;format=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8c/0b/8c0b3f376f5d1ac59e6103fb94fa4cb4af6b66a1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3998/mjm.13761231.0001.111"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks

Tomas Hruz, Markus Wyss, Christoph Lucas, Oliver Laule, Peter von Rohr, Philip Zimmermann, Stefan Bleuler
<span title="">2013</span> <i title="Hindawi Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/q4ydiqfw2vbdhaiqvqusudjtmi" style="color: black;">Advances in Bioinformatics</a> </i> &nbsp;
The algorithm has a potential to visualize very large networks because it uses modern clustering heuristics which are optimized for large graphs.  ...  The visualization of the corresponding network is challenging due to the size and density of edges.  ...  This work was also supported by Commission for Technology and Innovation of the Swiss Federation under Grant 9428.1 PFLS-LS.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2013/920325">doi:10.1155/2013/920325</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23864855">pmid:23864855</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3707208/">pmcid:PMC3707208</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sbejvewo5rcejokeuutu5acvqq">fatcat:sbejvewo5rcejokeuutu5acvqq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706190543/http://gene-quantification.de/hruz-et-al-biological-networks-2013.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/66/18/6618265ea8ba779470b6f8b20f32e95f0b3524a9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1155/2013/920325"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> hindawi.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707208" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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