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Context-aware mesh smoothing for biomedical applications

Tobias Moench, Rocco Gasteiger, Gabor Janiga, Holger Theisel, Bernhard Preim
<span title="">2011</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eu2m4gixpvbj3bgkrmcfu4ezdi" style="color: black;">Computers &amp; graphics</a> </i> &nbsp;
Finally, context-aware smoothing has been applied to CT angiography data for the simulation of blood flow.  ...  , which is relevant for this context-aware smoothing approach, is estimated automatically from the surface models.  ...  Acknowledgments: We thank Santhosh Seshadhri (ISUT Magdeburg) for preparing the volume models for CFD simulation. Tobias Moench  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cag.2011.04.011">doi:10.1016/j.cag.2011.04.011</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5isauecnp5dfvjiclszf3jfkr4">fatcat:5isauecnp5dfvjiclszf3jfkr4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20120713235724/http://wwwisg.cs.uni-magdeburg.de/visual/files/publications/2011/Moench_2011_CG.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/88/49/8849a872718c6a50f061ea8c1f4173f1b609b21b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.cag.2011.04.011"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

An Anisotropic Fluid-Solid Model of the Mouse Heart

J P Carson, A P Kuprat, X Jiao, F Del Pin, D R Einstein
<span title="2010-04-08">2010</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/me7h5nu7nrawpfrbrkrq7engbm" style="color: black;">Computers in cardiology</a> </i> &nbsp;
A multimaterial smoothing algorithm that rigorously conserves volume for each phase simultaneously smoothed the isosurfaces.  ...  Next we applied novel automated meshing algorithms to generate anisotropic hybrid meshes with the number of layers and the desired element anisotropy for each material as the only input parameters.  ...  Allan Johnson, Duke Center for In Vivo Microscopy under support from NCRR/NCI (P41 RR05959/U24 CA092656).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31527991">pmid:31527991</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6746410/">pmcid:PMC6746410</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3wn5ep4yfzabjff65b5gyniiai">fatcat:3wn5ep4yfzabjff65b5gyniiai</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170808155913/http://cinc.org/archives/2009/pdf/0377.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/9d/3d/9d3d0c2ae849d86d505a52608590d2aacf7ac0b0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6746410" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Exploring biomedical records through text mining-driven complex data visualisation [article]

Joao Pita Costa, Luka Stopar, Luis Rei, Besher Massri, Marko Grobelnik
<span title="2021-03-29">2021</span> <i title="Cold Spring Harbor Laboratory"> medRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The recent events in health call for the prioritization of insightful and meaningful information retrieval from the fastly growing pool of biomedical knowledge.  ...  The MEDijs system ingests and automatically annotates text documents, extending their legacy metadata with MeSH Headings.  ...  over these in a smooth incremental manner.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.03.27.21250248">doi:10.1101/2021.03.27.21250248</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nqnrlk3jqbakxpiqpe3gvfuckm">fatcat:nqnrlk3jqbakxpiqpe3gvfuckm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210715161931/https://www.medrxiv.org/content/medrxiv/early/2021/03/29/2021.03.27.21250248.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/22/56/22565f70fb1c812eb0798b98e5a66ff2bf1af6a3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/2021.03.27.21250248"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> medrxiv.org </button> </a>

High Quality Surface Mesh Generation for Multi-physics Bio-medical Simulations [chapter]

Dominik Szczerba, Robert McGregor, Gábor Székely
<span title="">2007</span> <i title="Springer Berlin Heidelberg"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
Manual surface reconstruction is still an everyday practice in applications involving complex irregular domains, necessary for modeling biological systems.  ...  Rapid development of biomedical imaging and simulation, however, requires automatic computations involving frequent re-meshing of (r)evolving domains that human-driven generation can simply no longer deliver  ...  The important differences are that 1) we use a very cheap, possibly inconsistent input represented as a polygonal mesh and not volumetric data; 2) we allow for smooth refinement of the re-generated mesh  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-72584-8_119">doi:10.1007/978-3-540-72584-8_119</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lm65sbmkobfmlhka7ojzaepdte">fatcat:lm65sbmkobfmlhka7ojzaepdte</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180726212730/https://link.springer.com/content/pdf/10.1007%2F978-3-540-72584-8_119.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/41/22/4122917d92b6edfaef352e8e73c73b46a3b570f3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-540-72584-8_119"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Sline: Seamless Line Illustration for Interactive Biomedical Visualization [article]

Nils Lichtenberg, Noeska Smit, Christian Hansen, Kai Lawonn
<span title="">2016</span> <i title="The Eurographics Association"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nz3bgc5hjvedbe7julfimhidve" style="color: black;">Eurographics Workshop on Visual Computing for Biomedicine</a> </i> &nbsp;
Using a single comprehensive parameter, users are able to quickly define a visual representation per structure that fits the visualization requirements for focus and context structures.  ...  This technique can be applied to any biomedical context in which multiple surfaces are routinely visualized, such as neurosurgery, radiotherapy planning or drug design.  ...  Kraima for their support.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/vcbm.20161281">doi:10.2312/vcbm.20161281</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/vcbm/LichtenbergSHL16.html">dblp:conf/vcbm/LichtenbergSHL16</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vkwwbrxopfdx7hh3xun6rxg6hi">fatcat:vkwwbrxopfdx7hh3xun6rxg6hi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220117172722/https://diglib.eg.org/xmlui/bitstream/handle/10.2312/vcbm20161281/133-142.pdf;jsessionid=521430ED39B908E90EEEF95C7D8F1B51?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/40/7a/407a744166bf6111f5439fa4299e4357a6bcd27e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.2312/vcbm.20161281"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

An improved geometry-aware curvature discretization for level set methods: Application to tumor growth

Paul Macklin, John Lowengrub
<span title="">2006</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f7kkigxhzjakref5b42jt4uoya" style="color: black;">Journal of Computational Physics</a> </i> &nbsp;
In this note, we give an improved discretization of curvature for use near level set singularities.  ...  An advantage of using level set methods for moving boundary problems is that geometric quantities such as curvature can be readily calculated from the level set function.  ...  The authors also thank the Network and Academic Computing Services (NACS) at the University of California at Irvine (UCI) and the departments of mathematics and biomedical engineering at UCI for generous  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jcp.2005.11.016">doi:10.1016/j.jcp.2005.11.016</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/d4bwkgr465dileq22t44m74dey">fatcat:d4bwkgr465dileq22t44m74dey</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20070824002646/http://math.uci.edu/~lowengrb/RESEARCH/publications/MacklinLJCP2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/42/76/4276dc0c5478af56e26fca10194859097212afdc.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jcp.2005.11.016"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Generating High-Quality Triangle Meshes from Medical Images

Zhong Chen, Zhiwei Hou, Yuegang Xing, Xiaobing Chen
<span title="2017-01-31">2017</span> <i title="Science and Engineering Research Support Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ym6wyoim55h6lliru6w4ssplki" style="color: black;">International Journal of Signal Processing, Image Processing and Pattern Recognition</a> </i> &nbsp;
The resulting triangle meshes are evaluated regarding surface smoothness, volume preservation, geometric accuracy.  ...  In order to remove staircase artifacts during mesh generation and obtain a smooth model from medical images, a novel removing staircase artifacts method is presented.  ...  ., [9] proposed context-aware mesh smoothing, which can be adaptively smoothed the artifact areas and preserve features in non-artifact areas, but this method was generated many low-quality meshes.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14257/ijsip.2017.10.1.17">doi:10.14257/ijsip.2017.10.1.17</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/cswz4nvpcneqvjugp52dkbtia4">fatcat:cswz4nvpcneqvjugp52dkbtia4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180602130724/http://www.sersc.org/journals/IJSIP/vol10_no1/17.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/d6/1ed607cf01400f4d7366d4425cc34c10a88b4347.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14257/ijsip.2017.10.1.17"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

A fast modal space transform for robust nonrigid shape retrieval

Jianbo Ye, Yizhou Yu
<span title="2015-03-10">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/yx6ragzaojavld2pw4coglzb2e" style="color: black;">The Visual Computer</a> </i> &nbsp;
Our approach constructs a context-aware integral kernel operator on a manifold, then applies modal analysis to map this operator into a low-frequency functional representation, called fast functional transform  ...  In a nutshell, our method is fast, isometry-invariant, discriminative, smooth and numerically stable with respect to multiple types of perturbations.  ...  Acknowledgments The authors would like to thank Maks Ovsjanikov and Dirk Smeets for sharing their software implementations.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00371-015-1071-5">doi:10.1007/s00371-015-1071-5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mcw22plna5di5fdqghuyth2qe4">fatcat:mcw22plna5di5fdqghuyth2qe4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20171130021817/https://core.ac.uk/download/pdf/38078113.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3b/e6/3be6aeb169ce3f05743f80c61fc49adea05b196b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s00371-015-1071-5"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Automated volume sampling optimization for direct volume deformation in patient-specific surgical simulation

A. Kei Wai, Cecilia Hung, B. Megumi Nakao, C. Kotaro Minato
<span title="">2009</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qcepwfkflvg5toaa6fh2alj3b4" style="color: black;">2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro</a> </i> &nbsp;
Patient-specific, interactive surgical simulation has become a major research direction in the biomedical side of computer graphics.  ...  This paper presents a novel volume sampling approach for preoperative planning by automating various conventional data preprocessing procedures.  ...  In contrast to the current mesh preparation processes necessary as described in Section 1, the user would not even be aware of the presence of a mesh when the volume sampling mesh is applied for it is  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/isbi.2009.5193236">doi:10.1109/isbi.2009.5193236</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/isbi/HungNM09.html">dblp:conf/isbi/HungNM09</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bgpfoomlojadjpgkuislulqdrm">fatcat:bgpfoomlojadjpgkuislulqdrm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170809131843/http://www.bme.sys.i.kyoto-u.ac.jp/~meg/doc/2009_ISBI_AutomatedVolumeSampling.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/2a/80/2a805474bd1ee7672d273374ff1212a0a45bbe4f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/isbi.2009.5193236"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

Topic dynamics

Dan He, D. Stott Parker
<span title="">2010</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/fqqihtxlu5bvfaqxjyvqcob35a" style="color: black;">Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD &#39;10</a> </i> &nbsp;
As a sample application, we present a topic dynamics model for the large PubMed/MEDLINE database of biomedical publications, using the MeSH (Medical Subject Heading) topic hierarchy.  ...  We show our model is able to detect bursts for MeSH terms accurately as well as efficiently.  ...  Thus we believe our termindependent model is more appropriate for burst detection in the biomedical literature using MeSH terms.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1835804.1835862">doi:10.1145/1835804.1835862</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/kdd/HeP10.html">dblp:conf/kdd/HeP10</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ydskwqpvn5hwdfd6mxvzuebfxq">fatcat:ydskwqpvn5hwdfd6mxvzuebfxq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170811045915/https://dollar.biz.uiowa.edu/~street/HeParker10.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ce/bf/cebf0705781306d595fbbb192ddcc468420deaf4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1835804.1835862"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Deep Active Surface Models

Udaranga Wickramasinghe, Pascal Fua, Graham Knott
<span title="">2021</span> <i title="IEEE"> 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) </i> &nbsp;
We will show that the resulting Deep Active Surface Models outperform equivalent architectures that use traditional regularization loss terms to impose smoothness priors for 3D surface reconstruction from  ...  2D images and for 3D volume segmentation.  ...  They have proved very successful for medical [28, 16] and cartographic applications [13] , among others, and are still being improved [23, 35, 18] .  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvpr46437.2021.01148">doi:10.1109/cvpr46437.2021.01148</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6kkmu23jp5gztjf2j27e6e6lzm">fatcat:6kkmu23jp5gztjf2j27e6e6lzm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20220108133409/https://os.zhdk.cloud.switch.ch/tind-tmp-epfl/b4717bc2-33a5-4e3c-9599-fee8f601a2fe?response-content-disposition=attachment%3B%20filename*%3DUTF-8&#39;&#39;Wickramasinghe_Deep_Active_Surface_Models_CVPR_2021_paper.pdf&amp;response-content-type=application%2Fpdf&amp;AWSAccessKeyId=ded3589a13b4450889b2f728d54861a6&amp;Expires=1641735249&amp;Signature=IF6w2HRdPAtzGmBmIW%2BctBz5OiM%3D" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/75/ea/75ea4456f8e237175cf49ecdc15dd85eddcb46a3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/cvpr46437.2021.01148"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

CBAG: Conditional Biomedical Abstract Generation [article]

Justin Sybrandt, Ilya Safro
<span title="2020-02-13">2020</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Meanwhile Medline, a database of biomedical abstracts, introduces nearly a million new documents per-year.  ...  A conditional language model, one that learns the probability of words given some a priori criteria, is a fundamental building block in many such applications.  ...  We present the Conditioned Biomedical Abstract Generation (CBAG) model for understanding scientific abstracts.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2002.05637v1">arXiv:2002.05637v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/p4glip75jzdqhdunrbdz4e4ssu">fatcat:p4glip75jzdqhdunrbdz4e4ssu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200321225505/https://arxiv.org/pdf/2002.05637v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2002.05637v1" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Exploring and linking biomedical resources through multidimensional semantic spaces

Rafael Berlanga, Ernesto Jiménez-Ruiz, Victoria Nebot
<span title="">2011</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Conclusions: Current knowledge resources and semantic-aware technology make possible the integration of biomedical resources.  ...  The method and the tool have been tested and evaluated in the context of the Health-e-Child (HeC) project.  ...  This article has been published as part of BMC Bioinformatics Volume 13 Supplement 1, 2012: Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2010.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-s1-s6">doi:10.1186/1471-2105-13-s1-s6</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/22373409">pmid:22373409</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3471347/">pmcid:PMC3471347</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/q4z3h3otzfel7lk3dvjqponspi">fatcat:q4z3h3otzfel7lk3dvjqponspi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170823042229/https://link.springer.com/content/pdf/10.1186%2F1471-2105-13-S1-S6.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/06/fe/06fe4e918bfa776838006b4f2637ffa7e9350aeb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2105-13-s1-s6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471347" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Centerline Extraction of Vasculature Mesh

Mingqiang Wei, Qiong Wang, Yichen Li, Wai-Man Pang, Luming Liang, Jun Wang, Kelvin Kian Loong Wong, Derek Abbott, Jing Qin, Jianhuang Wu
<span title="">2018</span> <i title="Institute of Electrical and Electronics Engineers (IEEE)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/q7qi7j4ckfac7ehf3mjbso4hne" style="color: black;">IEEE Access</a> </i> &nbsp;
Mesh representation of vasculature is fundamental to many medical applications.  ...  The benefit is a clean and tidy appearance in terms of visualization, as well as the possibility of applying computerassisted intervention and preoperative planning for patients.  ...  ACKNOWLEDGMENT The authors thank the anonymous reviewers for their valuable comments. M. Wei and Q. Wang equally contributed to this work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/access.2018.2802478">doi:10.1109/access.2018.2802478</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/m2viifut4vbanj42ulhsuwbhty">fatcat:m2viifut4vbanj42ulhsuwbhty</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190427102806/http://ira.lib.polyu.edu.hk/bitstream/10397/79772/1/Wei_Centerline_Extraction_Vasculature.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/42/c1/42c1f8bd88b8b25d86671fe79094965887dbcf40.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/access.2018.2802478"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> ieee.com </button> </a>

Empirical distributional semantics: Methods and biomedical applications

Trevor Cohen, Dominic Widdows
<span title="">2009</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p4kk6lusgrhyxecgig72iasi5q" style="color: black;">Journal of Biomedical Informatics</a> </i> &nbsp;
In this paper, we review the available methodologies for derivation of semantic relatedness from free text, as well as their evaluation in a variety of biomedical and other applications.  ...  Recent methodological developments, and their applicability to several existing applications are also discussed.  ...  We would also like to thank Tom Landauer for providing the TASA corpus and his comments on the validity of the TOEFL test, as well as two anonymous referees for their recommendations and thorough reviews  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jbi.2009.02.002">doi:10.1016/j.jbi.2009.02.002</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19232399">pmid:19232399</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2750802/">pmcid:PMC2750802</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ehih5ybxqffbbpw4xjkihel3fm">fatcat:ehih5ybxqffbbpw4xjkihel3fm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190327183327/https://core.ac.uk/download/pdf/82586160.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/95/9d/959d146b1afc2fa4c7ee95e58a3798b71b048515.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jbi.2009.02.002"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2750802" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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