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Constructing and maintaining scientific database views in the framework of the object-protocol model

I.-M.A. Chen, A.S. Kosky, V.M. Markowitz, E. Szeto
Proceedings. Ninth International Conference on Scientific and Statistical Database Management (Cat. No.97TB100150)  
The retrofitting tool is part of a data management toolkit based on the Object-Protocol Model (OPM).  ...  Scientific databases (ScDBs) are used to archive and retrieve data describing objects of scientific inquiry.  ...  We want to thank Stan Letovsky for providing numerous suggestions for improving the retrofitting tool. The anonymous reviewers provided useful suggestions that helped improving this paper.  ... 
doi:10.1109/ssdm.1997.621192 dblp:conf/ssdbm/ChenKMS97a fatcat:ytoqadnfizeqjh6kmnh4s5zm7a

Scientific modeling using distributed resources

Amitabh Saran, Divyakant Agrawal, Amr El Abbadi, Terence R. Smith, Jianwen Su
1996 Proceedings of the fourth ACM workshop on Advances in geographic information systems - GIS '96  
The first component is a cotnpubotul modeling environment (CME) in which scientists may represent and manipulate any scientific concept of potential value for the modcling enterprise.  ...  In particular, a CME should support the iterative process by which symbolic moclels of phenomena are constructed, evaluated, and applied.  ...  The filter for this model is maintained by scientists at Seattle. The output of the Discharge Model is the Hydrograph data, which is viewed by the scientist in Santa Barbara using MatLab.  ... 
doi:10.1145/258319.258339 dblp:conf/gis/SaranAASS96 fatcat:3cnlfx6jubenrlvey5yyula32y

SynBioWave—a real-time communication platform for molecular and synthetic biology

Paul R. Staab, Jörg Walossek, David Nellessen, Raik Grünberg, Katja M. Arndt, Kristian M. Müller
2010 Computer applications in the biosciences : CABIOS  
The initial development of SynBioWave demonstrates the power of the underlying Google Wave protocol for Synthetic Biology and lays the foundation for continuous and user-friendly extensions.  ...  Specialized wave-robots with a manageable set of capabilities will divide and conquer the complex task of creating a genome in silico.  ...  ACKNOWLEDGEMENTS We thank the Qooxdoo development team for technical help. Conflict of Interest: none declared.  ... 
doi:10.1093/bioinformatics/btq518 pmid:20841324 fatcat:4rmwwrg4bzct3nq6p4oyldwjsa

Advanced query mechanisms for biological databases

I M Chen, A S Kosky, V M Markowitz, E Szeto, T Topaloglou
1998 Proceedings. International Conference on Intelligent Systems for Molecular Biology  
, and notations, in the framework of the Object-Protocol Model (OPM).  ...  Users of a fixed form-based query interface are limited to performing some pre-defined queries providing a fixed view of the underlying database, while users of a free text query language-based interface  ...  The work presented in this paper was carried out while the authors were affiliated with the Lawrence Berkeley National Laboratory, with support provided by the Office of Health and Environmental Research  ... 
pmid:9783208 fatcat:r4phgte7lvcczlgynn6ekvoknu

Component-based e-commerce

Martin Bichler, Arie Segev, J. Leon Zhao
1998 SIGMOD record  
In order to identify the central problems in component-based e-commerce and ways to deal with them, we investigate prototypes, technologies, and frameworks that will transcend the current state of the  ...  In this paper, we first discuss the current practices and trends in component-based electronic commerce based on the International Workshop on Componentbased Electronic Commerce.  ...  Object-oriented programming constructs business systems in terms of objects that represent things in the real world naturally and effectively, thus making the software system easier to understand for designers  ... 
doi:10.1145/306101.306102 fatcat:c65hswrxmrfepncl4r5jkrhtcm

Lineage retrieval for scientific data processing: a survey

Rajendra Bose, James Frew
2005 ACM Computing Surveys  
Researchers are effectively prevented from determining, preserving, or providing the lineage of the computational data products they use and create, however, because of the lack of a definitive model for  ...  Scientific research relies as much on the dissemination and exchange of data sets as on the publication of conclusions.  ...  ACKNOWLEDGMENTS We would like to acknowledge the constructive comments of two anonymous reviewers, as well as helpful discussions with Bruce Barkstrom  ... 
doi:10.1145/1057977.1057978 fatcat:glbarziup5eqpmqak3gw2uxdhu

ERP System Implementation Based SOA under SaaS Model

Danyang Zhao, Feng Ye
2014 American Journal of Industrial and Business Management  
In recent years, information management draws more and more attention. Various ERP systems have gradually emerged, and the development techniques of systems are becoming more flexible.  ...  With the increasing of complex business, there will be more demands on the flexibility, practicality and scalability of the system.  ...  Multilevel nature of the J2EE framework model allows the system structure clearer, easier to reuse and maintain software. Also in each layer there integrates into a lot of technical framework.  ... 
doi:10.4236/ajibm.2014.47043 fatcat:2bgkjtgjrncjtbjamvykah44ku

Managing scientific metadata

M.B. Jones, C. Berkley, J. Bojilova, M. Schildhauer
2001 IEEE Internet Computing  
Metacat is a network-enabled database framework that lets users store, query, and retrieve XML documents with arbitrary schemas in SQL-compliant relational database systems.  ...  DEB-0072909), the University of California, and the UC Santa Barbara campus.  ...  DBI99-04777 and DEB99-80154 and by the National Center for Ecological Analysis and Synthesis, which is funded by NSF (grant no.  ... 
doi:10.1109/4236.957896 fatcat:jftcjaaefngwvmsyb364cppk4i

Parallel and Distributed Computing using Pervasive Web and Object Technologies [chapter]

Geoffrey C. Fox, Wojtek Furmanski
1998 Advances in Parallel Computing  
The latter host various services including object and relational databases and, of course, parallel and sequential computing.  ...  Examples are given from collaborative systems, support of multidisciplinary interactions, proposed visual HPCC ComponentWare, distributed simulation, and the use of Java in high-performance computing.  ...  First compare the two views of a parallel computer in Figures 9 and 10 . Figure 9 : A Parallel Computer viewed as a single CORBA object in a classic "Host-node computing model.  ... 
doi:10.1016/s0927-5452(98)80004-x fatcat:wwlv4fetlrgyrdllyjw74rf37y

Ecce?a problem-solving environment's evolution toward Grid services and a Web architecture

Karen Schuchardt, Brett Didier, Gary Black
2002 Concurrency and Computation  
In this paper, we briefly examine the original Ecce architecture and discuss how it is evolving to incorporate both Grid services and components of the Web to increase its range of services, reduce deployment  ...  We show that Ecce operates in both Grid and non-Grid environments, an important consideration given Ecce's broad range of uses and user community, and discuss the strategies for loosely coupled components  ...  Acknowledgements The authors would like to acknowledge the work of Dave Jackson (SuperCluster.org) and Scott Jackson (PNNL) for their work on the Silver MetaScheduler, their efforts in pulling together  ... 
doi:10.1002/cpe.673 fatcat:ahjvmdel3nfzxc34ljdyeuhgly

Biocompute Objects—A Step towards Evaluation and Validation of Biomedical Scientific Computations

Vahan Simonyan, Jeremy Goecks, Raja Mazumder
2016 PDA journal of pharmaceutical science and technology  
We also discuss the reasoning and potential usability for such concept within the larger scientific community through the creation of a biocompute object database initially consisting of records relevant  ...  A biocompute object database record will be similar to a GenBank record in form; the difference being that instead of describing a sequence, the biocompute record will include information related to parameters  ...  Acknowledgments We would like to mention with gratitude the following people for providing valuable comments regarding research and regulatory aspects to HTS:  ... 
doi:10.5731/pdajpst.2016.006734 pmid:27974626 pmcid:PMC5510742 fatcat:bmuqdqok4fevxecpwoekw47euq

A novel digital information service for federating distributed digital entities

Ahmet F. Mustacoglu, Geoffrey C. Fox
2016 Information Systems  
We investigate the performance and the scalability metrics of the Digital Information Service framework that is used for unifying and federating online digital entities by retrieving and managing information  ...  This system supports a number of existing online Web 2.0 research tools (social bookmarking, academic search, scientific databases, journal and conference content management systems) and aims to develop  ...  Discussion: The consistency framework of the proposed Digital Information Service falls into a client-centric consistency model, and the implementation protocol is the replicated-write protocol because  ... 
doi:10.1016/j.is.2015.07.007 fatcat:lhhaaile2nfjlcwbhykcyqst4e

Project management system for structural and functional proteomics: Sesame

Zsolt Zolnai, Peter T Lee, Jing Li, Michael R Chapman, Craig S Newman, George N Phillips, Ivan Rayment, Eldon L Ulrich, Brian F Volkman, John L Markley
2003 Journal of Structural and Functional Genomics  
Each Sesame application module consists of a simple user interface in the client tier, corresponding objects in the server tier, and relevant data stored in the centralized database.  ...  The Sesame software package, which follows the client/server paradigm, consists of a framework, which supports secure interactions among the three tiers of the system (the client, server, and database  ...  Clifton and his colleagues at the LEAD Services (College of Engineering, University of Wisconsin-Madison) for their professional evaluation of the Sesame project.  ... 
pmid:12943363 fatcat:6d7zgxbsh5emnlxlmcrpjr74c4

Design and Implementation of Cross-platform Ecological Yak Information Management System Based on Android System

YAN-NAN JIANG, JUN ZHANG, WEI XIANG
2018 DEStech Transactions on Computer Science and Engineering  
In this paper, we designed a cross-platform Yak Information Management System, which based on Android and combines the HTML5 Ionic framework, Angular JS, and other development technologies.  ...  The system can track the complex growth of yaks and provide herders with help.  ...  Acknowledgement This work was partially supported by Sichuan Youth Science and Technology Innovation Research Team (2017TD0028).Also was supported by the Fundamental Research Funds for Central University  ... 
doi:10.12783/dtcse/iceit2017/19874 fatcat:go3dersnfreipgr6i75cuvrkwq

Adopting a Proxy Database to Prevent Direct Access to Distributed Transaction Databases Ensuring Information Security

Mohammad Ghulam Ali
2022 Journal of Advances in Mathematics and Computer Science  
In this scientific and technical practical-oriented research paper, it is proposed a concept of Proxy Database to prevent direct access to distributed transaction databases and also ensuring the data and  ...  A proxy table will be mapped with the local distributed table and tables in the form of view.  ...  I have worked well on the Multidatabase and database integration techniques (materlized and mediated) and this has encouraged the me to write this technical and scientific practical-oriented research article  ... 
doi:10.9734/jamcs/2022/v37i330441 fatcat:fryvac7f3bhndai6uvx35gorne
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