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Trends in life science grid: from computing grid to knowledge grid

Akihiko Konagaya
2006 BMC Bioinformatics  
Grid computing has great potential to become a standard cyberinfrastructure for life sciences which often require high-performance computing and large data handling which exceeds the computing capacity  ...  Results: This survey reviews the latest grid technologies from the viewpoints of computing grid, data grid and knowledge grid.  ...  Acknowledgements The authors express special thanks for the member of the Open Bioinformatics Grid project and anonymous reviewers for their valuable discussion and useful comments for this manuscript.  ... 
doi:10.1186/1471-2105-7-s5-s10 pmid:17254294 pmcid:PMC1764466 fatcat:tlemqfzeljfdbaxa6gw5mid7f4

Grid Computing In Physics And Life Sciences

Heinz Stockinger
2008 Zenodo  
Certain sciences such as physics, chemistry or biology, have a strong computational aspect and use computing infrastructures to advance their scientific goals.  ...  Often, high performance and/or high throughput computing infrastructures such as clusters and computational Grids are applied to satisfy computational needs.  ...  This work was funded in part by the EU project EMBRACE Grid which is funded by the European Commission within its FP6 Programme, under the thematic area "Life sciences, genomics and biotechnology for health  ... 
doi:10.5281/zenodo.1086095 fatcat:aqlr32kkb5c5pnlcdo6wrguxnu

Grid Computing, E-Science and Applications in Industry [chapter]

Hans Hoffmann
2005 Wirtschaftsinformatik 2005  
Interest of E-Science and Grid Computing for Industry The path to involve industry in grid computing can first pass through sciences enabled by full use of ICT and grid infrastructures and providing novel  ...  The LHC Computing Grid 24 Project (LCG) In September 2001 the CERN Council approved the first phase of the LHC Computing Grid project based on the needs established in the Computing Review discussed above  ... 
doi:10.1007/3-7908-1624-8_90 fatcat:lzbfsdwuejbybmziltlovdtdia

Computing and Data Grids for Science and Engineering

W.E. Johnston, D. Gannon, B. Nitzberg, L.A. Tanner, B. Thigpen, A. Woo
2000 ACM/IEEE SC 2000 Conference (SC'00)  
for high performance computing and data handling.  ...  We describe the services and architecture of NASA's Information Power Grid ("IPG") -an early example of a large-scale Grid -and some of the issues that have come up in its implementation.  ...  The architecture described above is being implemented in several Grid projects, including NASA's IPG, DOE's ASCI distributed computing program ( [19] ), and the DOE Science Grid.  ... 
doi:10.1109/sc.2000.10007 dblp:conf/sc/JohnstonGNTTW00 fatcat:htf56shlyncstalwl3xsgsspqy

Computational Science in Smart Grids and Energy Systems

Hongjie Jia, Ned Djilali, Xinghuo Yu, H. D. Chiang, Gongnan Xie
2015 Journal of Applied Mathematics  
Introduction Computational science for smart grids (SG) and energy systems (EG) pertains to the development of mathematical models, numerical simulations, quantitative analysis, and optimization techniques  ...  Rigorous reliability and security operation standards for smart grids will require novel computational science technologies for online modeling, estimation, analysis, control, optimization, decision support  ... 
doi:10.1155/2015/326481 fatcat:5lg635xglfdxxowrvd43ulhijq

Reputation-Based Pricing for Grid Computing in E-Science

Arun Anandasivam, Dirk Neumann
2008 European Conference on Information Systems  
One of the fundamental aspects for an efficient Grid usage is the optimization of resource allocation among the participants. However, this has not yet materialized.  ...  In e-Science researchers do not appreciate idiosyncratic pricing strategies and policies. Their interest lies in doing research in an efficient manner.  ...  In e-Science Grid users are researchers who are sending jobs to the Grid consume subsequently from other Grid research institutes. In our model we will consider sites as consumer and provider.  ... 
dblp:conf/ecis/AnandasivamN08 fatcat:azmqjzhe7fahvg33t2vnreb26q

DZero data-intensive computing on the Open Science Grid

B Abbott, A Baranovski, M Diesburg, G Garzoglio, T Kurca, P Mhashilkar
2008 Journal of Physics, Conference Series  
Access to OSG computing and storage resources was coordinated by the SAM-Grid system.  ...  The activity utilized resources from sites around the world, including a dozen sites participating to the Open Science Grid consortium (OSG).  ...  The consortium is funded by the National Science Foundation and the US Department of Energy's Office of Science.  ... 
doi:10.1088/1742-6596/119/6/062001 fatcat:t5ongghkczbxvbsvejugdu52zm

Grid computing and e-science: a view from inside

Stefano Cozzini
2008 JCOM: Journal of Science Communication  
My intention is to analyze how, where and if grid computing technology is truly enabling a new way of doing science (so-called 'e-science').  ...  I shall first define some basic terms and concepts and then discuss a number of specific cases in which the use of grid computing has actually made possible a new method for doing science.  ...  Many national and international projects around the world are now carrying out research and innovation activities that transform the vision of e-science/ e-infrastructure and Grid computing into reality  ... 
doi:10.22323/2.07020303 fatcat:gedqv3oymbhnhbzhsx2oonk5rm

Journal of Grid Computing, Special Issue of Cloud Computing and Services Science

Donald F. Ferguson, Víctor Méndez Muñoz
2017 Journal of Grid Computing  
This special issue contains 5 papers that significantly contribute to the advancement of grid computing, cloud computing and services science.  ...  First, the papers went through peer review for acceptance to the 5th International Conference on Cloud Computing and Services Science.  ... 
doi:10.1007/s10723-017-9398-y fatcat:qco7k4wsorhhpdo3sl6kbycr5e

Editorial for special section of grid computing journal on "Cloud Computing and Services Science"

Marten J. van Sinderen, Ivan I. Ivanov
2014 Cluster Computing  
The rise of cloud computing popularity is undeniable.  ...  Although the notion of cloud computing is itself a bit 'clouded' and stories about cloud computing are to some extent hyped as a result of cloud marketing, studies indicate that clouds have some clear  ...  field of services science [9] .  ... 
doi:10.1007/s10586-014-0379-7 fatcat:lwkctngumzf43mvkxlv2id5lem

Peer4Peer: e-Science Community for Network Overlay and Grid Computing Research [chapter]

Luís Veiga, João Nuno Silva, João Coelho Garcia
2011 Guide to e-Science  
cycles spread around the Internet as a desktop Grid (over a peer-to-peer overlay); and 3) a framework for topology definition, dissemination, evaluation and reuse which eases Grid and overlay research  ...  This chapter describes a novel approach to Grid and overlay network research that leverages distributed infrastructures and multi-core machines enabling increased simulation complexity and speed.  ...  The type of research we are addressing in this work is a part of computer science (developing protocols for overlay networks and Grid middleware is computer science).  ... 
doi:10.1007/978-0-85729-439-5_4 dblp:series/ccn/VeigaSG11 fatcat:g676uhjijbbvnc2r44drnpec5i

Grid computing and collaboration technology in support of fusion energy sciences

D. P. Schissel
2005 Physics of Plasmas  
In computing power, it has become reasonable to decouple production and consumption resulting in the ability to construct computing grids in a similar manner as the electrical power grid.  ...  in grid computing and advanced collaborative environments to further research in several specific scientific domains.  ...  Authentication is the process in a computerized transaction that gives assurance that a person or computer acting on a person's behalf is not an impostor.  ... 
doi:10.1063/1.1906219 fatcat:dpnkkc7zsrgpblsajaxu3ynnna

Using Computing and Data Grids for Large-Scale Science and Engineering

William E. Johnston
2001 The international journal of high performance computing applications  
, Office of Advanced Scientific Computing Research, Mathematical, Information, and Computational Sciences Division (under contract DE-AC03-76SF00098 with the University of California.  ...  computing, data management, and real-time instrumentation Grid involves many more services.  ... 
doi:10.1177/109434200101500303 fatcat:hrjwcrhalfhapgzs3jygradrlm

The Application Hosting Environment: Lightweight Middleware for Grid-Based Computational Science [article]

P. V. Coveney, R. S. Saksena, S. J. Zasada, M. McKeown, S. Pickles
2006 arXiv   pre-print
We describe how a range of computational science codes have been hosted within the AHE and how the design of the AHE allows us to implement complex workflows for deployment on grid infrastructure.  ...  Grid computing is distributed computing performed transparently across multiple administrative domains.  ...  international computational science community.  ... 
arXiv:physics/0609168v2 fatcat:3hgdkdhncfcmzgo5ap5x4jxpwa

The application hosting environment: Lightweight middleware for grid-based computational science

P.V. Coveney, R.S. Saksena, S.J. Zasada, M. McKeown, S. Pickles
2007 Computer Physics Communications  
This has led many of the people who would benefit most from grid technology, namely computational scientists, to avoid using it.  ...  Current grid computing technologies have often been seen as being too heavyweight and unwieldy from a client perspective, requiring complicated installation and configuration steps to be taken that are  ...  V Summary The AHE is designed to facilitate grid based computational science by extension of existing approaches to the use of high-end computing resources.  ... 
doi:10.1016/j.cpc.2006.11.011 fatcat:kon7qkcavnhjbkh4oadmbqfv5y
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