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New methods for space reconstruction of inside cell structures

Dalibor Martišek, Karel Martišek, Jana Procházková
2007 Journal of Applied Biomedicine  
The computer program based on these methods can be run on a common PC.  ...  The method can model cell illumination by an external light source and is a next important step in the realistic displaying of cells.  ...  ACKNOWLEDGEMENT This study was supported by the Ministry of Education, Youth and Sports of the Czech Republic, research plan MSM 0021630518 "Simulation modelling of mechatronic systems".  ... 
doi:10.32725/jab.2007.020 fatcat:odmce77hofbt5brxxsvffdredq

The Fur Transcription Regulator and Fur-Regulated Genes inClostridium botulinumA ATCC 3502

Weibin Zhang, Junhua Ma, Chengyuan Zang, Yingying Song, Peipei Liu
2011 Journal of Biomedicine and Biotechnology  
This study has provided-us novel insights into the diversity of Fur transcription regulators in differentClostridium botulinumstrains and diversity of Fur-targeted genes, as well as a better understanding  ...  utilization, iron transport, and transcription regulator.  ...  The phylogenetic tree was reconstructed using the neighborjoining method in the MEGA 4.0 program [11] .  ... 
doi:10.1155/2011/934756 pmid:22203788 pmcid:PMC3238811 fatcat:pdfiuixfczg6jidmmba6cb7t2q

An Ensemble of Fine-Tuned Convolutional Neural Networks for Medical Image Classification

Ashnil Kumar, Jinman Kim, David Lyndon, Michael Fulham, Dagan Feng
2017 IEEE journal of biomedical and health informatics  
Lung tumor segmentation in PET images using graph cuts. Computer Methods and Programs in Biomedicine, 109(3), 260-268.  ...  Multimodal neuroimaging computing: the workflows, methods, and platforms. Brain Informatics, 2(3), 181-195.  ... 
doi:10.1109/jbhi.2016.2635663 pmid:28114041 fatcat:j2hnyn4lzramrfswccvg6bwqhe

Characterization of the Foramen Magnum in a Sudanese Population Using Computed Tomography

Ikhlas Abdelaziz, Salem Saeed Alghamdi, Abubakr Haroun, Mohammed Yousef, Abdulrahman Tajaldeen, Rowa Aljondi, Somayah Alghamdi, Mogahid Zidan
2020 International Journal of Biomedicine  
Key Words: foramen magnum • base of the skull • computed tomography  ...  The aim of this study is to use CT images to characterize the foramen magnum (FM) in a sample of Sudanese participants and examine the effect on FM diameters of patient height and the diameter of the base  ...  Huzaifa Mohamed Elsanosi for his support and guidance. Our thanks also go to the staff of Radiology Department of Abdoon SidAhmed Diagnostic Center.  ... 
doi:10.21103/article10(3)_oa4 fatcat:4xksq5xz7jethdj6n4sqj6w7de

Page 53 of Library & Information Science Abstracts Vol. , Issue 6 [page]

1990 Library & Information Science Abstracts  
There are problems in searching J-BISC using multiword headings and specific methods must be used for entering subdivisions (e.g. Religion - Japan - History).  ...  An ideal system has to involve a knowledge-base, multimedia data base and user friendly man-machine interface. (Original abstract—amended) ZkVsg — Boolean strategies. Computer programs.  ... 

Information Technology in Health Care: Information Retrieval, Processing, and Protection (Review)

A.B. Kuznetsov, A.S. Mukhin, I.S. Simutis, L.A. Shchegolkov, G.A. Boyarinov
2018 Sovremennye tehnologii v medicine  
to use modern computer information technologies in 2016 gave an impetus to investigate the issue of computerization in health-care facilities.  ...  Hacker attacks on information resources in clinics of the UK, Belgium, Lithuania, clinical and biochemical laboratories in Russia and Belarus in 2017 as well as the refusal of 199 German hospital managers  ...  Methods and applications of evolutionary computation in biomedicine. J Biomed Inform 2014; 49: 11-15, https://doi.org/10.1016/j.jbi.2014.05.008. 8. Hoverman J.R.  ... 
doi:10.17691/stm2018.10.3.26 fatcat:pghj5h6qirfdje475rirbhazzu

Multiscale modeling meets machine learning: What can we learn? [article]

Grace C.Y. Peng, Mark Alber, Adrian Buganza Tepole, William Cannon, Suvranu De, Salvador Dura-Bernal, Krishna Garikipati, George Karniadakis, William W. Lytton, Paris Perdikaris, Linda Petzold, Ellen Kuhl
2020 arXiv   pre-print
, biomedicine, systems biology, and precision medicine to join forces towards creating robust and efficient models for biological systems.  ...  We anticipate that it will stimulate discussion within the community of computational mechanics and reach out to other disciplines including mathematics, statistics, computer science, artificial intelligence  ...  It is mature in that methods for learning parameters for a model such as dynamic programming and variational methods have been known and applied for a long time.  ... 
arXiv:1911.11958v2 fatcat:u4d4snmwq5bfrcvt7is6fkswgy

Data Integration Challenges for Machine Learning in Precision Medicine

Mireya Martínez-García, Enrique Hernández-Lemus
2022 Frontiers in Medicine  
A number of challenges arise in the design of successful designs to medical data analytics under currently demanding conditions of performance in personalized medicine, while also subject to time, computational  ...  Computational approaches to medicine need to be able to efficiently manage, visualize and integrate, large datasets combining structure, and unstructured formats.  ...  EH-L acknowledges additional support from the 2016 Marcos Moshinsky Fellowship in the Physical Sciences.  ... 
doi:10.3389/fmed.2021.784455 pmid:35145977 pmcid:PMC8821900 fatcat:nxco4r4gsjdfnpbgoditxjptya

Review of light field technologies

Shuyao Zhou, Tianqian Zhu, Kanle Shi, Yazi Li, Wen Zheng, Junhai Yong
2021 Visual Computing for Industry, Biomedicine, and Art  
The physical concept of light fields was first proposed in 1936, and light fields are becoming increasingly important in the field of computer graphics, especially with the fast growth of computing capacity  ...  According to these achievements and challenges, in the near future, the applications of light fields could offer more portability, accessibility, compatibility, and ability to visualize the world.  ...  Acknowledgements The authors are grateful to Kuaishou Technology, University of California, Berkeley, and Tsinghua University.  ... 
doi:10.1186/s42492-021-00096-8 pmid:34862574 pmcid:PMC8642475 fatcat:6rq5rx5svrcerdr7rciaijy3k4

Coupling Machine Learning and Lipidomics as a Tool to Investigate Metabolic Dysfunction-Associated Fatty Liver Disease: A General Overview

Helena Castañé, Gerard Baiges-Gaya, Anna Hernández-Aguilera, Elisabet Rodríguez-Tomàs, Salvador Fernández-Arroyo, Pol Herrero, Antoni Delpino-Rius, Nuria Canela, Javier A. Menendez, Jordi Camps, Jorge Joven
2021 Biomolecules  
We aimed to provide a general overview for all readers interested in implementing these methods.  ...  Hence, to detect this disease as soon as possible, the use of computational science can help us to make a more accurate and reliable diagnosis.  ...  This may include administrative and technical support, or donations in kind (e.g., materials used for experiments). Conflicts of Interest: The authors declare no conflict of interest.  ... 
doi:10.3390/biom11030473 pmid:33810079 pmcid:PMC8004861 fatcat:ey3oyxvqorgcveqx3hbpckew54

Identifying Sources of Disagreement: Generalizability Theory in Manual Annotation Studies

Petra Saskia Bayerl, Karsten Ingmar Paul
2007 Computational Linguistics  
Material Computational Linguistics Volume 33, Number 1 Table 1 G-Study results for Shriberg and Lof (1991), Table 8, Set A.  ...  Computational Linguistics 22(2):249-254. Chiu, Christopher W. T. and Edward W Wolfe. 2003. A method for analyzing sparse data matrices in the generalizability theory framework.  ... 
doi:10.1162/coli.2007.33.1.3 fatcat:xlxgwfiuo5cohh37izbhnpwmvm

Recent development on computer aided tissue engineering — a review

Wei Sun, Pallavi Lal
2002 Computer Methods and Programs in Biomedicine  
(RP) technology in tissue engineering, particularly, in computer-aided tissue anatomical modeling, three-dimensional (3-D) anatomy visualization and 3-D reconstruction, CAD-based anatomical modeling, computer-aided  ...  The utilization of computer-aided technologies in tissue engineering has evolved in the development of a new field of computer-aided tissue engineering (CATE).  ...  It requires the comparison of deformations between computerized models and in vivo tissues.  ... 
doi:10.1016/s0169-2607(01)00116-x pmid:11809316 fatcat:p7ksftzq7jfpxfmpcoq7vf4pwu

Imaging Informatics and the Human Brain Project: the Role of Structure

J.F. Brinkley, C. Rosse
2002 IMIA Yearbook of Medical Informatics  
Image registration Image volume data are represented in the computer by a 3-D volume array, in which each voxel (volume-element, analogous to pixel in 2-D) represents the image intensity in a small volume  ...  Many of these and other techniques are implemented in the SPM program [127] , the AFNI program [128] , the Lyngby toolkit [129] , and several commercial programs such as Medex [51] and BrainVoyager  ... 
doi:10.1055/s-0038-1638122 fatcat:7772svrns5eh3ggukonut7rl5u

Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions

Kamal Al Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
2012 Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12  
However, there is no registration between the detected SSEs and the protein sequence, and therefore it is challenging to derive the atomic structure from such volume data.  ...  We present, in this paper, the preliminary results of the full-atom protein chains using our de novo modeling framework.  ...  The initial structures are expected to be refined by additional refinement programs in the future. Figure 1 illustrates the major steps in our de novo modeling method.  ... 
doi:10.1145/2382936.2382999 dblp:conf/bcb/Al-NasrCSRZH12 fatcat:zl4mwolmnjfzvhlv367jmrbu4a

Reproducible big data science: A case study in continuous FAIRness

Ravi Madduri, Kyle Chard, Mike D'Arcy, Segun C. Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman (+4 others)
2019 PLoS ONE  
We show how the tools automate routine but complex tasks, capture analysis algorithms in understandable and reusable forms, and harness fast networks and powerful cloud computers to process data rapidly  ...  In response, we describe tools that make it easy to capture, and assign identifiers to, data and code throughout the data lifecycle.  ...  Acknowledgments We thank the Galaxy and Globus teams, and other developers of tools on which we build here, for their work.  ... 
doi:10.1371/journal.pone.0213013 pmid:30973881 pmcid:PMC6459504 fatcat:peawdsd735duzmnpgrjm2ulwqa
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