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An Immunogenetic Approach in Chemical Spectrum Recognition [chapter]

Yuehua Cao, Dipankar Dasgupta
2003 Natural Computing Series  
This chapter describes an immunogenetic approach to recognize spectra for chemical analysis.  ...  The computational complexity of this immunogenetic approach is O(mn) in terms of the number of comparisons with straightforward implementation, where m is the length of each string and n is the size of  ...  In this chapter, we describe the use of an immunogenetic approach in the interpretation of chemical spectra.  ... 
doi:10.1007/978-3-642-18965-4_36 fatcat:jmebaeafcjey7loywz6ebfoexi

MiDAS—Meaningful Immunogenetic Data at Scale

Maciej Migdal, Dan Fu Ruan, William F. Forrest, Amir Horowitz, Christian Hammer, Mihaela Pertea
2021 PLoS Computational Biology  
We here present MiDAS, a comprehensive R package for immunogenetic data transformation and statistical analysis.  ...  Human immunogenetic variation in the form of HLA and KIR types has been shown to be strongly associated with a multitude of immune-related phenotypes.  ...  Variable type MiDAS experiment name Definition PLOS Computational Biology | https://doi.org/10.1371/journal.pcbi.1009131 July 6, 2021  ... 
doi:10.1371/journal.pcbi.1009131 pmid:34228721 pmcid:PMC8284797 fatcat:byk4vhqdbffnriyyhhllayn32a

Computational immunogenetics in allogeneic immunotherapy [article]

David S. DeLuca, University, My, University, My
2019
The eld immunogenetics is an area which can benet greatly from the possibilities oered by computational biology for data organization and analysis.  ...  There is a high likelihood that an eective treatment for leukemia will one day result from the eorts in the eld of immunogenetics. Computer systems will help. Part III.  ...  To manage such complex systems, computer scientists have developed the concept of data warehousing.  ... 
doi:10.15488/7024 fatcat:5lksxj3lmfbsfajmbvevlh3pmu

Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

Can Kesmir, Ronald Bontrop
2019 Immunogenetics  
However, to do this properly calls for an interdisciplinary approach in which bioinformaticians and computational biologists work in close collaboration with immunologists.  ...  The current special issue deals with nomenclature, databases, and bioinformatics in immunogenetics.  ... 
doi:10.1007/s00251-019-01150-9 pmid:31848642 fatcat:6fukuy2srjalbjb4ihgcv6tvsu

Towards an integrated framework for clinico-biological data management and analysis: The case of Chronic Lymphocytic Leukemia

Evangelia Minga, Athanasios Gkoufas, Anna Vardi, Evangelia Stalika, Anastasia Hadzidimitriou, Kostas Stamatopoulos, Nicos Maglaveras, Ioanna Chouvarda
2013 13th IEEE International Conference on BioInformatics and BioEngineering  
Bioinformatics challenges include not only the computational burden of analyzing many thousands or millions of complex rearranged IG/TR sequences, but also the comprehensive and consistent annotation of  ...  In parallel, new challenges arise, for example, involving grid technologies for more efficient handling of computational needs, as well as big data management, processing and visualisation challenges.  ... 
doi:10.1109/bibe.2013.6701690 dblp:conf/bibe/MingaGVSHSMC13 fatcat:ju2kixoqbneq5nly6sly3ih72a

Isolation, expression, and the primary structure of HLA-Cw1 and HLA-Cw2 genes: evolutionary aspects

Detlef Güssow, Rita S. Rein, Ingeborg Meijer, Wout de Hoog, Gerhard H. A. Seemann, Frans M. Hochstenbach, Hidde L. Ploegh
1988 Immunogenetics  
Errata cumulative selection, the computer quickly comes up with the desired sentence.  ...  Sanderson, Ekkehard Genth, and Matthias Cramer Immunogenetics 26: [351] [352] [353] [354] [355] 1987 In this article the designation on the vertical axis (ordinate) of Figure 1 should read "relative  ... 
doi:10.1007/bf00351094 fatcat:gglgsv43mrg6zjsc4efroprvnm

Antigenic determinants shared between HLA-A, -B, -C antigens and H-2 class I molecules modified by bovine beta-2 microglobulin

Rudolf Mierau, Peter J. Robinson, Arnold R. Sanderson, Ekkehard Genth, Matthias Cramer
1988 Immunogenetics  
Errata cumulative selection, the computer quickly comes up with the desired sentence.  ...  Sanderson, Ekkehard Genth, and Matthias Cramer Immunogenetics 26: [351] [352] [353] [354] [355] 1987 In this article the designation on the vertical axis (ordinate) of Figure 1 should read "relative  ... 
doi:10.1007/bf00351095 fatcat:bzw2cgccmnf3nfewdjrjxxqrua

Immunoglobulin gene analysis in chronic lymphocytic leukemia in the era of next generation sequencing

Frédéric Davi, on behalf of ERIC, the European Research Initiative on CLL, and the EuroClonality-NGS Working Group, Anton W. Langerak, Anne Langlois de Septenville, P. Martijn Kolijn, Paul J. Hengeveld, Anastasia Chatzidimitriou, Silvia Bonfiglio, Lesley-Ann Sutton, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos
2020 Leukemia  
Here we address potential and challenges of NGS-based immunogenetics in CLL.  ...  However, NGS has heralded a new era in medical diagnostics and immunogenetic analysis is following this trend.  ...  analysis in CLL; (2) organization of educational events that combine lectures, computer-based practical sessions, interactive discussions, and expert panel-led debates on topics pertinent to immunogenetics  ... 
doi:10.1038/s41375-020-0923-9 pmid:32561841 fatcat:feffzjzhlnchlhm34fpoid7jyi

Long‐Term Survivors in Nairobi: Complete HIV‐1 RNA Sequences and Immunogenetic Associations

Guowei Fang, Carla Kuiken, Barbara Weiser, Sarah Rowland‐Jones, Francis Plummer, Chih‐Hsiung Chen, Rupert Kaul, Aggrey Omu Anzala, Job Bwayo, Joshua Kimani, Sean M. Philpott, Christina Kitchen (+12 others)
2004 Journal of Infectious Diseases  
CCR2-V64I, an immunogenetic polymorphism linked to LTSs, was detected in 4 women, all of whom carried the HLA B58 allele.  ...  To investigate African long-term survivors (LTSs) infected with non-subtype B human immunodeficiency virus type 1 (HIV-1), we obtained full-length HIV-1 RNA sequences and immunogenetic profiles from 6  ...  Complete HIV-1 RNA sequences were assembled, aligned, and analyzed by computational methods [7] . GenBank accession numbers are shown in table 1.  ... 
doi:10.1086/421504 pmid:15272396 fatcat:tcnc5rfgq5dyzn3s67r7ptg34u

Sinus Valsalva Aneurysms in a Patient with Ankylosing Spondilitis

Ibrahim Akpinar, Zehra Golbasi, Ahmet Saritas, Aysel Turkvatan
2012 Internal medicine (Tokyo. 1992)  
Computed tomography demonstrated Valsalva aneurysms including right, left and non-coronary sinuses, which were 45×54 mm, 6 mm and 7 mm in size, respectively (Picture 2A, 2B).  ...  Concomitant aortic root expansion and sinus of valsalva aneurysm has been reported in previous publications among patients with immunogenetic marker HLA B27 positive ankylosing spondilitis (1).  ... 
doi:10.2169/internalmedicine.51.6835 pmid:22449684 fatcat:imlucpakxfawpp3vp62kvogvgm

Retraction: Ana Strezova. Genotyping of HLA-A, HLA-C and HLA-B Loci with Reverse Line Strip Hybridization in Macedonian Population and Association of HLA Class I Alleles with Spondilitis [MSc thesis]

Mirko Spiroski
2017 Macedonian Journal of Medical Sciences  
HLA DNA typing results from Macedonian population were officially submitted for analysis and publication to the 15th International Histocompatibility and Immunogenetics Workshop (IHIWS).  ...  Two populations were published from the same cohort: i) in the 15th International Histocompatibility and Immunogenetics Workshop 250 samples for HLA-A, 247 samples for HLA-B, 250 samples for HLA-C, 564  ...  the GENE[RATE] computer tools accommodating ambiguous data (AHPD project report) and are published [5] .  ... 
doi:10.3889/mjms.1857-5773.2010.0107 fatcat:gxe4nqkekvbz3gmncxf6y723hu

Page 3889 of Mathematical Reviews Vol. , Issue 84i [page]

1984 Mathematical Reviews  
Computer programs to perform these computations are in preparation.” 84i:92024 84i:92025a 841:92025b Anderson, David H. [Anderson, David Hezekiah] Structural properties of compartmental models. Math.  ...  From the summaries: “Part I summarizes approaches to developing mathematics that can act as a language for immunogenetics.  ... 

Editorial: biological ontologies and semantic biology

John M. Hancock
2014 Frontiers in Genetics  
They provide an update on the IMGT-Ontology which is an ontology of immunogenetics and immunoinformatics used in the international ImMunoGeneTics information sys-tem® (http://www.imgt.org).  ...  The Special Topic in Biological Ontologies and Semantic Biology brings together papers in this broad area-which spans computer science, computational biology and bioinformatics-providing a platform for  ... 
doi:10.3389/fgene.2014.00018 pmid:24550936 pmcid:PMC3912459 fatcat:jzgsht7ewnfkdewouq7omlotsi

Ontology for immunogenetics: the IMGT-ONTOLOGY

V. Giudicelli, M.-P. Lefranc
1999 Bioinformatics  
Artero, Valérie Barbié, Valérie Contet, Géraldine Folch, Chantal Ginestoux, Christèle Jean, Manuel Ruiz and Dominique Scaviner for the IMGT annotations and database development, Denys Chaume for expert computing  ...  and immunogenetics.  ...  IMGT, the international ImMunoGeneTics database (http://imgt.cines.fr:8104) , is an integrated and specialized database for immunogenetics.  ... 
doi:10.1093/bioinformatics/15.12.1047 pmid:10745995 fatcat:bhek7jhw2vau3mkzq4ft5wi35i

Immunogenetical penetrance in patients with primary biliary cirrhosis

Toshiaki SHIBASAKI, Takashi SHIMADA, Takashi MORITA, Osamu SAKAI
1990 Japanese Journal of Medicine  
From these results, it can be suggested that immunogenetic penetrance might be associated with the occurrence of familial PBC.  ...  Although there were no abnor- malities on imaging, with abdominal echogram and computed tomography, there were mild esophageal varices.  ...  We report here two cases of PBC in which it was possible to evaluate the immunogenetic circumferences.  ... 
doi:10.2169/internalmedicine1962.29.533 fatcat:qj4o62bzx5fnbe6x6iq4fqmlwi
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