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Common structural features of the Ro RNP associated hY1 and hY5 RNAs

Celia W.G. van Gelder, José P.H.M. Thijssen, Erik C.J. Klaassen, Christine Sturchler, Alain Krol, J. van Walther, Ger J.M. Pruijn
<span title="">1994</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
The secondary structures of human hYl and hY5 RNAs were determined using both chemical modification techniques and enzymatic structure probing.  ...  The results indicate that both for hYl and for hY5 RNA the secondary structure largely corresponds to the structure predicted by sequence alignment and computerized energy-minimization.  ...  Use of the services and facilities of the Dutch CAOS/CAMM Center, under grant numbers SON 326-052 and STW NCH99.1751, is gratefully acknowledged.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/22.13.2498">doi:10.1093/nar/22.13.2498</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/8041611">pmid:8041611</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC308201/">pmcid:PMC308201</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t5bpewv6rveb7e6oxyxdwk2zm4">fatcat:t5bpewv6rveb7e6oxyxdwk2zm4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210125355/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC308201&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/71/52/7152f8e6975b1a01730a2570aeff570f9f3edd4e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/22.13.2498"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC308201" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

The Ro small cytoplasmic ribonucleoproteins: identification of the antigenic protein and its binding site on the Ro RNAs

S. L. Wolin, J. A. Steitz
<span title="1984-04-01">1984</span> <i title="Proceedings of the National Academy of Sciences"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nvtuoas5pbdsllkntnhizy4f4q" style="color: black;">Proceedings of the National Academy of Sciences of the United States of America</a> </i> &nbsp;
The class of particles recognized by anti-Ro antibodies contains from two to four small cytoplasmic RNAs, depending on the mammalian species examined. We find that an  ...  Patients with systemic lupus erythematosus and other rheumatic diseases often possess autoantibodies directed against discrete classes of small ribonucleoprotein particles (RNPs).  ...  To determine what common feature of Ro RNA sequence or structure is recognized by the Ro protein, we carried out ribonuclease protection experiments on isolated Ro RNPs from HeLa cells.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.81.7.1996">doi:10.1073/pnas.81.7.1996</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/6201849">pmid:6201849</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC345423/">pmcid:PMC345423</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jaedvvbb75dqre5dvtcak5r5cu">fatcat:jaedvvbb75dqre5dvtcak5r5cu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180727220007/http://www.pnas.org/content/pnas/81/7/1996.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d7/59/d7593dfb89275d4077d2dffd2411cb32b96f0436.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1073/pnas.81.7.1996"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC345423" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A subset of hY RNAs is associated with erythrocyte Ro ribonucleoproteins

C. A. O'Brien, J. B. Harley
<span title="">1990</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xcjlfiweh5bfpiome6ieuwel2a" style="color: black;">EMBO Journal</a> </i> &nbsp;
Sequencing of the hY4 RNA Because erythrocytes contain a subset of the hY RNAs, these RNAs, hY1 and hY4, were analyzed to determine if they shared any common features with each other or with hY3 and hY5  ...  We have demon- strated that hY1 and hY4 Ro RNAs are associated with erythrocyte Ro RNPs and represent a subset of the four hY RNAs found in HeLa cell and leukocyte Ro RNPs.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/j.1460-2075.1990.tb07580.x">doi:10.1002/j.1460-2075.1990.tb07580.x</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/r2vl6yzwsrdthhtd7ap4zmsdha">fatcat:r2vl6yzwsrdthhtd7ap4zmsdha</a> </span>
<a target="_blank" rel="noopener" href="https://archive.org/details/sim_embo-journal_1990-11_9_11/page/3683" title="read fulltext microfilm" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Archive [Microfilm] <div class="menu fulltext-thumbnail"> <img src="https://archive.org/serve/sim_embo-journal_1990-11_9_11/__ia_thumb.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/j.1460-2075.1990.tb07580.x"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a>

Gene encoding human Ro-associated autoantigen Y5 RNA

R Maraia
<span title="1996-09-15">1996</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Ro ribonucleoproteins are composed of Y RNAs and the Ro 60 kDa protein.  ...  Y5 RNA occupies a large fraction of Ro 60 kDa protein in human Ro RNPs, contains an atypical 3′-extension not found on other Y RNAs, and constitutes an RNA antigen in certain autoimmune patients [Boulanger  ...  Howard and the NICHD for support for E.B.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/24.18.3552">doi:10.1093/nar/24.18.3552</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/8836182">pmid:8836182</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC146121/">pmcid:PMC146121</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/aveg3fylxjdxzm3zuqfbg4gqtu">fatcat:aveg3fylxjdxzm3zuqfbg4gqtu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180728151617/https://watermark.silverchair.com/24-18-3552.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAagwggGkBgkqhkiG9w0BBwagggGVMIIBkQIBADCCAYoGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM319Rf2JrOCk5C95YAgEQgIIBW3-Bzt_7xjQlbvkZ2Ymwke1-Bua6gbncAUAQa8teWTJeCHrRX_aF_8_w1OmEp9U2H7q-xCiQpSbHmM4LhASOCnVF36YiYHCXny4UmQgQiEAFw3iCcW_VjUG8MNbO0Vwu0HjxCFLODDeE3JKeHNXVE3nc8rKgMe_frpFytzNeiWSfRfmCar1df-1nOsdi2AMxS51sfaHwM9Yb1bfxgTpSnVgToSKB1IhXPgTRfKDw3xJZ4SYy-jaOdxSG2T5whU_svEu_fgbKrOOqfskHNp55wUYbV2P8K0Tnj6hX3mwTuzChJ7fZb0ObBIy8zP9sh2Gtb0pq4dHFmY9F4_5tWxaR-aXjJT9tUT80qC-lPzhkO4G9vSgE5KMzLLomIyhbTaAQFQtyoXuXXW2Yi-cBQZPCpNjIW51bRGzVLrz2xahtR9v6taLzBKahbDApkkyKfREF6-Me83UsWw9NxQMi" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c2/b5/c2b5b43f921411d7840abda1d474aceab27cc087.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/24.18.3552"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC146121" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

A subset of hY RNAs is associated with erythrocyte Ro ribonucleoproteins

C A O'Brien, J B Harley
<span title="">1990</span> <i title="EMBO"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/xcjlfiweh5bfpiome6ieuwel2a" style="color: black;">EMBO Journal</a> </i> &nbsp;
We have demonstrated that hY1 and hY4 Ro RNAs are associated with erythrocyte Ro RNPs and represent a subset of the four hY RNAs found in HeLa cell and leukocyte Ro RNPs.  ...  Ribonuclease inhibition activity has been found in erythrocytes and this activity inhibits the degradation of hY3 and hY5 in leukocyte lysates thereby favoring the possibility that the presence of hY1  ...  This work was supported by the NIH (AI24717, AR39577 and A121568), March of Dimes Birth Defects Foundation (1-1109), and Veterans Administration.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/1698620">pmid:1698620</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC552123/">pmcid:PMC552123</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5kapru5zrfbt3injhfpn5oijdm">fatcat:5kapru5zrfbt3injhfpn5oijdm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210132924/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC552123&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ee/b9/eeb9bb2e2e6c266c19320d8bfb7c193676689c8e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC552123" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Y RNA in cell cycle progression and cancer

Roberto Piergentili
<span title="">2020</span> <i title="INIST-CNRS"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwpdxxwe25awxikzl37o54oe5q" style="color: black;">Atlas of Genetics and Cytogenetics in Oncology and Haematology</a> </i> &nbsp;
Common structural features of the Ro RNP associated hY1 and hY5 RNAs  ...  Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting J Extracell Vesicles 2015 May 29;4:26760  ...  Y RNA in cell cycle progression and cancer Piergentili R Atlas Genet Cytogenet Oncol Haematol. 2020; 24(10)  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/70820">doi:10.4267/2042/70820</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/nbzdcz4kozbzjhcaxksil2cuoa">fatcat:nbzdcz4kozbzjhcaxksil2cuoa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20201105205638/http://documents.irevues.inist.fr/bitstream/handle/2042/70820/02-2020-YRNAID20152.pdf;jsessionid=69C672E50A65E8C399F8805DCD802860?sequence=1" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/3d/5b/3d5b75d14f89df998a86e89975246d8ce22c4812.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4267/2042/70820"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs

J. Perreault
<span title="2005-03-23">2005</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
We report the characterization in the human genome of 966 pseudogenes derived from the four human Y (hY) RNAs, components of the Ro/SS-A autoantigen.  ...  About 95% of the Y RNA pseudogenes are found in corresponding locations on the chimpanzee and human chromosomes.  ...  This work was supported by a grant from the Canadian Institute of Health Research (CIHR) to the RNA group and to J.-P.P.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki504">doi:10.1093/nar/gki504</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15817567">pmid:15817567</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1074747/">pmcid:PMC1074747</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/zf5gql5nyrg2lgwiwa34ab3oeu">fatcat:zf5gql5nyrg2lgwiwa34ab3oeu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20111222134034/http://pages.usherbrooke.ca/perreault/articles/PerreaultJ2005.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4e/47/4e4748b4a996630cce817ec6c5231b5fbe013efa.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki504"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1074747" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Functional roles of non-coding Y RNAs

Madzia P. Kowalski, Torsten Krude
<span title="2015-07-06">2015</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7gdzce36mzb53pdb2r5ae6yewq" style="color: black;">International Journal of Biochemistry and Cell Biology</a> </i> &nbsp;
Here, we review the biochemical functions associated with these structural RNA domains, as well as the functional conservation of Y RNAs in different species.  ...  The existing biochemical and structural evidence supports a domain model for these small non-coding RNAs that has direct implications for the modular evolution of functional non-coding RNAs.  ...  The funders had no involvement in the design and preparation of this article.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.biocel.2015.07.003">doi:10.1016/j.biocel.2015.07.003</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26159929">pmid:26159929</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4726728/">pmcid:PMC4726728</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/yqfebmbw2baw3n2g3ps57dw24u">fatcat:yqfebmbw2baw3n2g3ps57dw24u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200508174417/https://www.repository.cam.ac.uk/bitstream/handle/1810/248909/1-s2.0-S1357272515001806-main.pdf;jsessionid=DE0964BC740A8EFB33D5749C26406E66?sequence=6" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/58/fb/58fb813c43d578a5eb771feee09f777866108da9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.biocel.2015.07.003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726728" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Non-coding Y RNAs as tethers and gates

Sandra L Wolin, Cedric Belair, Marco Boccitto, Xinguo Chen, Soyeong Sim, David W Taylor, Hong-Wei Wang
<span title="">2013</span> <i title="Informa UK Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2gz5p7hhszcttc2a7kuvirxupu" style="color: black;">RNA Biology</a> </i> &nbsp;
PNPase is a homotrimeric ring that degrades single-stranded RNA, and Y RNA-mediated tethering of Ro60 increases the effectiveness of PNPase in degrading structured RNAs.  ...  N on-coding RNAs (ncRNAs) called Y RNAs are abundant components of both animal cells and a variety of bacteria.  ...  This work was supported by NIH grant R01 GM073863 (to SLW) and National Basic Research Program of China grant 2010CB912401 (to H-WW). DWT is an NSF Graduate Research Fellow.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/rna.26166">doi:10.4161/rna.26166</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24036917">pmid:24036917</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3866240/">pmcid:PMC3866240</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/b2jr63cying7jpmksl6hw4g45q">fatcat:b2jr63cying7jpmksl6hw4g45q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200501082548/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3866240&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/99/0e/990ecd74dba86b169e171137124a130a7d07fe7b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/rna.26166"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3866240" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Molecular composition of Ro small ribonucleoprotein complexes in human cells. Intracellular localization of the 60- and 52-kD proteins

A Kelekar, M R Saitta, J D Keene
<span title="1994-04-01">1994</span> <i title="American Society for Clinical Investigation"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3toa7g22uzexljesj5ehm7x7da" style="color: black;">Journal of Clinical Investigation</a> </i> &nbsp;
The migration of the hY RNAs in these gradients closely followed that of 60-kD and not 52-kD Ro.  ...  Ro small ribonucleoprotein complexes (RoRNPs) are thought to comprise several proteins, including the 60-kD Ro and the 52-kD Ro proteins, and several small RNAs, designated Y RNAs.  ...  Acknowledgment We thank the members ofthe Keene laboratory for helpful suggestions, and for critically reading the manuscript. A.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1172/jci117145">doi:10.1172/jci117145</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/7512986">pmid:7512986</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC294201/">pmcid:PMC294201</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6umxj6xzeba2rdslq6xg2tlpga">fatcat:6umxj6xzeba2rdslq6xg2tlpga</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723052912/https://dm5migu4zj3pb.cloudfront.net/manuscripts/117000/117145/JCI94117145.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/eb/41/eb41fb88f679d98da9586ad8c4945aa994614e77.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1172/jci117145"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC294201" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis

A. Farris
<span title="1999-02-15">1999</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
In order to identify conserved features of Y RNA sequences and structures which may be directly involved in Ro RNP function, a phylogenetic comparative analysis of Y RNAs has been performed.  ...  acids or are sites of interaction between the Ro RNP and other macromolecules.  ...  The work of G.J.M.P has been made possible by a fellowship of the Royal Netherlands Academy of Arts and Sciences. The SORA program is available by return email as FORTRAN executable source code.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.4.1070">doi:10.1093/nar/27.4.1070</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/9927741">pmid:9927741</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC148288/">pmcid:PMC148288</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/4rasaaksffadfbpq3j7yy7y5ba">fatcat:4rasaaksffadfbpq3j7yy7y5ba</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180729150953/https://watermark.silverchair.com/27-4-1070.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAaMwggGfBgkqhkiG9w0BBwagggGQMIIBjAIBADCCAYUGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM9mbFHujUcEAkHrjrAgEQgIIBVmyo1yuXRcmHaG4GBMm00QUi6QqlLAy5GzfU0dy-anameSmLBrl819Fv744eM1j2TG-hZ6pH1ntGs6AyknbRw7pA2-ccvJvE1IicqAXmmBGk-E1YDgFHMf0RYp8fhp5xyIm92_epAiPOEjxD5O16epgkcOQSPtLXn2_eTRt9UONhrKMuQlvsTXSflHMOvkPE3rmd-J0n07L55eVZDDjsjRMNhu3wUB3M8Rdytdfg1Z1-i1C2_wyWOJ5E_kMS4zRi2PahFjJh4AQqi-0m1cbjCN_XfdC8YcKi71VjyOU4HOIR0y7rTlDX3QTg_GpDud0pWyiMiqmbYsIE-mDcSF7OcEU_8027oKXYKXrnn2Id7nNDB2lAxBBVF4u3jKk17UCVxSuQ6LYmyORb5Dd9N1OPrIH7xG2BZV0you-QkL9DcfnzAlIceTDwEzwmMQh9mNA7QFnBCqatZQ" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/4e/ad/4eadddc922dcdcb71a1d019c71e3f47c2f82d2b3.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/27.4.1070"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC148288" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Emerging roles for the Ro 60-kDa autoantigen in noncoding RNA metabolism

Soyeong Sim, Sandra L. Wolin
<span title="2011-04-21">2011</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/i4ixk5h7qjb6xhlkuj3zhix7ke" style="color: black;">Wiley Interdisciplinary Reviews - RNA</a> </i> &nbsp;
A member of this latter category, the Ro 60 kDa protein and its associated noncoding Y RNAs, was discovered because the protein component is a frequent target of the autoimmune response in patients with  ...  Finally, Y RNAs can influence the subcellular location of Ro, inhibit access of the central cavity to other RNAs and may also act as binding sites for proteins that influence Ro function.  ...  Acknowledgments We thank Liz Turner and Xinguo Chen for comments on the text. This work was supported by grants from the National Institutes of Health and the Ellison Medical Foundation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/wrna.85">doi:10.1002/wrna.85</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21823229">pmid:21823229</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3154076/">pmcid:PMC3154076</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/scdeadz7rzh4dgwpgyx7zvglve">fatcat:scdeadz7rzh4dgwpgyx7zvglve</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200208222105/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3154076&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/61/ff/61ff30ec8e32b3a5ada5130ed70c4b1b871e0cba.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/wrna.85"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154076" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Biochemical and immunological heterogeneity of the Ro ribonucleoprotein particles. Analysis with sera specific for the RohY5 particle

G Boire, J Craft
<span title="1989-07-01">1989</span> <i title="American Society for Clinical Investigation"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3toa7g22uzexljesj5ehm7x7da" style="color: black;">Journal of Clinical Investigation</a> </i> &nbsp;
only on RohY5 particles and is absent on the Ro particles containing the hY1-hY4 RNAs (RohY1-hY4 particles).  ...  Anti-Ro autoantibodies found in sera from patients with systemic lupus erythematosus and related diseases precipitate four RNAs (hY1-hY5) from human cell extracts.  ...  The number of Ro RNAs varies among mammalian cell types: human HeLa cells contain four, designated hY 1 -hY5 (hY2 is a slightly degraded form of hY1); murine cells have two, mY1 and mY2 (5) ; and rat  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1172/jci114150">doi:10.1172/jci114150</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/2472427">pmid:2472427</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC303979/">pmcid:PMC303979</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/v57fdgrrcjh4lg4wtdosgll3iy">fatcat:v57fdgrrcjh4lg4wtdosgll3iy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180730124311/https://dm5migu4zj3pb.cloudfront.net/manuscripts/114000/114150/cache/114150.1-20150302165911-covered-253bed37ca4c1ab43d105aefdf7b5536.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/31/5f/315f40be8089e088f66afe542bb5703acd73e986.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1172/jci114150"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC303979" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Ro-Associated Y RNAs in Metazoans: Evolution and Diversification

Jonathan Perreault, Jean-Pierre Perreault, Gilles Boire
<span title="2007-04-29">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4bimmtjdczetrfmnc3ijbmwpoy" style="color: black;">Molecular biology and evolution</a> </i> &nbsp;
In addition, the evolution of existing Y RNAs was deduced for many families, orders and classes. Moreover, a consensus sequence and secondary structure for each Y species was determined.  ...  These searches confirmed that Y RNAs are well conserved in the animal kingdom and resulted in the detection of several new Y RNA genes, including the first Y RNAs in insects and a second Y RNA detected  ...  This work was supported by grants from the Canadian Institutes of Health Research (CIHR) to J.P.P. and to the RNA group (PRG-80169).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/molbev/msm084">doi:10.1093/molbev/msm084</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17470436">pmid:17470436</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/x5dnhferdzddpenodkxcgdhaum">fatcat:x5dnhferdzddpenodkxcgdhaum</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180726185828/https://watermark.silverchair.com/msm084.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAaEwggGdBgkqhkiG9w0BBwagggGOMIIBigIBADCCAYMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMqBn97DA5aXKEjAF6AgEQgIIBVPqnWXPz-ivkkzngaQx9KDkPi0WcFgC0zMaHzwqze7yxes8d5f-6QXwKOytdFmQLfulPRYv08QafKNUB8WToFLltyT6X_4cREz6H7GDW9CSbJmyhmfb87i7ikpD52FvEQLaIWPzeWAqZGLmjRS3MJP98fXKqdxJFALt6RnMFy8LgIHpBqVXq02mem9HR7C6G6lBERa948ZBdI1xXRqzt8RXJVASVXKI-m96Y4kFnn7XOPp3f5f3NJUzJzSSf2sztz6OHkorLgSlKrr387WDevxwYw-DIwafr1O1Ve3km8CjhlohKi1XTkTfRBqZLRclaTuPUNbnE8vB9s_1WBK6onMi982VzikD8-21LX2iyG498lo3W6ErZhxoRzpSBJv40sdu2E_00u02H8DG1jX8En3qaL5TZ6ehbr8dmX__n7OU8hJk7nSgvJoVsBmH_EMc9Inc5-rw" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/dc/56/dc56937df494e18325fabb047c52b6a7b9ee2fa5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/molbev/msm084"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells

J P Hendrick, S L Wolin, J Rinke, M R Lerner, J A Steitz
<span title="">1981</span> <i title="American Society for Microbiology"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ki5pr2lmenbmbijbb4tkftguwe" style="color: black;">Molecular and Cellular Biology</a> </i> &nbsp;
The Ro RNPs are quite stable and are localized by immunofluorescence in the cell cytoplasm, whereas the majority of the La RNPs turn over rapidly and reside in the nucleus.  ...  In both ribonucleoprotein (RNP) classes, the numbers of different RNA molecules and their sequences vary between mouse and human cells.  ...  (i) The two mouse cell Ro RNAs (mYl and mY2) and the five HeLa cell Ro RNAs (hY1 though hY5) yielded clean fingerprints of appropriate complexity for their size.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mcb.1.12.1138">doi:10.1128/mcb.1.12.1138</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/6180298">pmid:6180298</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC369740/">pmcid:PMC369740</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/3ryilupwvfbotbddeln4tpstg4">fatcat:3ryilupwvfbotbddeln4tpstg4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180722054457/http://mcb.asm.org/content/1/12/1138.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/86/57/86579e851573d644896f2731822337521d877539.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1128/mcb.1.12.1138"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> asm.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC369740" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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