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CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences

Yang Ding, William A Lorenz, Jeffrey H Chuang
2012 BMC Bioinformatics  
Conclusions: CodingMotif provides a theoretically and empirically-demonstrated advance for the detection of motifs overrepresented in coding sequences.  ...  These sequence motifs are expected to be overrepresented in nucleotide sequences bound by a common protein or small RNA.  ...  JHC was supported by National Science Foundation Award 0850155 as part of the American Recovery and Reinvestment Act.  ... 
doi:10.1186/1471-2105-13-32 pmid:22333114 pmcid:PMC3298695 fatcat:ek7aej3b3remvgj3l6ket62fsm