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ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface

Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
<span title="2017-03-11">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/n5zrklrhlzhtdorf4rk4rmeo3i" style="color: black;">BMC Bioinformatics</a> </i> &nbsp;
Results: We introduce a graphical user interface (GUI) providing a complete analysis pipeline for processing raw NGS data for human and animal TCR and BCR clonotype determination and advanced differential  ...  To facilitate the analysis of T and B cell repertoires by less experienced users, software is needed that combines the most common tools for repertoire analysis.  ...  Funding This work was funded by the Excellence Cluster Inflammation at Interfaces EXC306 and by the SFB 654 from the German Research Foundation.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12859-017-1575-2">doi:10.1186/s12859-017-1575-2</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28284194">pmid:28284194</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5346239/">pmcid:PMC5346239</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/vqszbqno4bf4fl3rup7rjmdyaa">fatcat:vqszbqno4bf4fl3rup7rjmdyaa</a> </span>
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