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Transfer learning for non-image data in clinical research: A scoping review
<span title="2022-02-17">2022</span>
<i title="Public Library of Science (PLoS)">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ijwgep2m45canj4ytphdwkhmbm" style="color: black;">PLOS Digital Health</a>
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Therefore, the objective of this scoping review was to explore the use of transfer learning for non-image data in the clinical literature. ...
Conclusions In this scoping review, we have described current trends in the use of transfer learning for non-image data in the clinical literature. ...
We are also grateful for the comments of Professor Daniel R. ...
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<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1371/journal.pdig.0000014">doi:10.1371/journal.pdig.0000014</a>
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Reusing electronic patient data for dental clinical research: A review of current status
<span title="">2013</span>
<i title="Elsevier BV">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/e7h3vu6jcvh2biakhhovoco6zm" style="color: black;">Journal of Dentistry</a>
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First, reuse of EHR data for research has added significantly to our capacity to generate knowledge from routine clinical care. ...
First, EHR data are collected for clinical, not research purposes (6, 14) . ...
statistical power (14), (31), (42), (47) , (53) , • Save time compared to reviewing paper charts/records (14), (36), (59) • Provide a rich resource for outcomes research (29), (35), (58) • Identify ...
<span class="external-identifiers">
<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jdent.2013.04.006">doi:10.1016/j.jdent.2013.04.006</a>
<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23603087">pmid:23603087</a>
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Considerations for ethics review of big data health research: A scoping review
<span title="2018-10-11">2018</span>
<i title="Public Library of Science (PLoS)">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s3gm7274mfe6fcs7e3jterqlri" style="color: black;">PLoS ONE</a>
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The methodological novelty and computational complexity of big data health research raises novel challenges for ethics review. ...
In this study, we conducted a scoping review of the literature using five databases to identify and map the major challenges of health-related big data for Ethics Review Committees (ERCs) or analogous ...
Acknowledgments This manuscript was supported by the Swiss National Science Foundation under award 407540_167223 (NRP 75 Big Data). ...
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Building a Common Pediatric Research Terminology for Accelerating Child Health Research
<span title="2014-02-17">2014</span>
<i title="American Academy of Pediatrics (AAP)">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jjwdvrbalba7bozmsndi7jy2te" style="color: black;">Pediatrics</a>
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By reducing the barriers between clinical care and clinical research, a Learning Health System can leverage and reuse not only its own ...
Removing barriers to integrating and reusing data collected in different settings will permit new opportunities to develop a more complete picture of a patient' s care and to leverage data from related ...
that support a wide range of clinical research programs. 1-3 Similar approaches for collecting and reusing detailed clinical data also support nationalperformanceimprovementcollaboratives and disease-specific ...
<span class="external-identifiers">
<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1542/peds.2013-1504">doi:10.1542/peds.2013-1504</a>
<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24534404">pmid:24534404</a>
<a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3934328/">pmcid:PMC3934328</a>
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Big Data Application in Biomedical Research and Health Care: A Literature Review
<span title="">2016</span>
<i title="SAGE Publications">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/td3zasiymrcevlj2s5evtfdnzi" style="color: black;">Biomedical Informatics Insights</a>
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Big data technologies are increasingly used for biomedical and health-care informatics research. ...
hardware and software for parallel computing, and the extensive expansion of EHRs. ...
PARAMO supports the generation and reuse of a clinical data analysis pipeline for different modeling purposes. ...
<span class="external-identifiers">
<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4137/bii.s31559">doi:10.4137/bii.s31559</a>
<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/26843812">pmid:26843812</a>
<a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4720168/">pmcid:PMC4720168</a>
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Utilization of open source electronic health record around the world: A systematic review
<span title="">2014</span>
<i title="Medknow Publications">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ob73zwqfpzhdxpru6ukua6c4uu" style="color: black;">Journal of Research in Medical Sciences</a>
</i>
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The identified papers were screened and reviewed during a string of stages for the irrelevancy and validity. ...
The current study was conducted to review the published data on the utilization of open source EHR systems in different countries all over the world. ...
ACKNOWLEDGMENT This study was part of a PhD thesis supported by Iran University of Medical Sciences. ...
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<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24672566">pmid:24672566</a>
<a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3963324/">pmcid:PMC3963324</a>
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Clinical Research Informatics: Contributions from 2017
<span title="">2018</span>
<i title="Georg Thieme Verlag KG">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/25ybzim6mvglde3zgjvka7ehii" style="color: black;">IMIA Yearbook of Medical Informatics</a>
</i>
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The first best paper reports on the implementation of consent management considering patient preferences for the use of de-identified data of electronic health records for research. ...
Objectives: To summarize key contributions to current research in the field of Clinical Research Informatics (CRI) and to select best papers published in 2017. ...
Acknowledgement We would like to acknowledge the support of Martina Hutter and the reviewers in the selection process of the IMIA Yearbook. ...
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<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1055/s-0038-1641220">doi:10.1055/s-0038-1641220</a>
<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30157521">pmid:30157521</a>
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Semantic processing of EHR data for clinical research
<span title="">2015</span>
<i title="Elsevier BV">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p4kk6lusgrhyxecgig72iasi5q" style="color: black;">Journal of Biomedical Informatics</a>
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<span title="2015-11-10">2015</span>
<span class="release-stage" >pre-print</span>
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1511.03036v1">arXiv:1511.03036v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xmxaurjb5nhonozwcydi355nhm">fatcat:xmxaurjb5nhonozwcydi355nhm</a> </span>
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1511.03036v1">arXiv:1511.03036v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xmxaurjb5nhonozwcydi355nhm">fatcat:xmxaurjb5nhonozwcydi355nhm</a> </span>
There is a growing need to semantically process and integrate clinical data from different sources for clinical research. ...
It is also possible to further convert data to application semantics and store the converted results in clinical research databases, e.g. i2b2, OMOP, to support different clinical research settings. ...
The authors would also like to thank Els Lion for reviewing and improving the text of this paper. ...
<span class="external-identifiers">
<a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jbi.2015.10.009">doi:10.1016/j.jbi.2015.10.009</a>
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Information Technology for Clinical, Translational and Comparative Effectiveness Research
<span title="">2015</span>
<i title="Schattauer GmbH">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/25ybzim6mvglde3zgjvka7ehii" style="color: black;">IMIA Yearbook of Medical Informatics</a>
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Acknowledgement We would like to acknowledge the support of Martina Hutter and the reviewers in the selection process of the IMIA Yearbook. ...
be well placed to deliver international scale solutions to enable the reuse of hospital EHR data to support clinical research studies. ...
In conclucion, current research demonstartes that different projects and initiatives could be well placed to deliver international solutions for the reuse of hospital EHR data to support clinical research ...
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Can antiepileptic drug efficacy be studied from electronic health records? A review of current approaches
[article]
<span title="2020-07-07">2020</span>
<i title="Cold Spring Harbor Laboratory">
medRxiv
</i>
<span class="release-stage" >pre-print</span>
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Whereas automated data extraction pipelines are a crucial advancement, this review calls attention to standardizing NLP methodology and accuracy reporting for greater generalizability. ...
In this review, we examined automatic electronic health record (EHR) extraction methodologies pertinent to epilepsy examining AED efficacy. ...
For any extraction algorithm measuring a given variable, precision and recall can be reported on a training set (the same set of data that was used to create the extraction algorithm) or on a test set ...
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What you need to know before implementing a clinical research data warehouse: a comparative review of integrated data repositories in health care institutions (Preprint)
<span title="2020-01-03">2020</span>
<i title="JMIR Publications Inc.">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/7jx4bydftnbxpargqdejkixwii" style="color: black;">JMIR Formative Research</a>
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This review aims to explore the underlying models and common features of IDRs, provide a high-level overview for those entering the field, and propose a set of guiding principles for small- to medium-sized ...
IDRs offer several opportunities for clinical data reuse, and the number of institutions implementing an IDR has grown steadily in the past decade. ...
Acknowledgments The project was supported, in part, by an Evidence to Innovation (E2i) Research Theme seed grant through the BC Children's Hospital Research Institute. ...
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Clinical research informatics: a conceptual perspective
<span title="2012-06-01">2012</span>
<i title="Oxford University Press (OUP)">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/aapnwtybrvghlc35hfimbtdlom" style="color: black;">JAMIA Journal of the American Medical Informatics Association</a>
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We present a conceptual model based on an informatics-enabled clinical research workflow, integration across heterogeneous data sources, and core informatics tools and platforms. ...
4e6 and (2) the growing interest in sustainable, large-scale, multi-institutional distributed research networks for comparative effectiveness research. 7e9 Given the large landscape that comprises translational ...
Another common challenge to reusing clinical data for clinical research is to extract information from unstructured data sources, such as text and images. ...
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Computer-interpretable clinical guidelines: A methodological review
<span title="">2013</span>
<i title="Elsevier BV">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/p4kk6lusgrhyxecgig72iasi5q" style="color: black;">Journal of Biomedical Informatics</a>
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This paper reviews the literature on CIG-related methodologies since the inception of CIGs, while focusing and drawing themes for classifying CIG research from CIG-related publications in the Journal of ...
methodologies, (3) integration of CIGs with electronic health records (EHRs) and organizational workflow, (4) CIG validation and verification, (5) CIG execution engines and supportive tools, (6) exception ...
Arturo González-Ferrer for his highly instrumental comments and discussion. ...
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ENABLING EHEALTH IN TRADITIONAL MEDICINE: A SYSTEMATIC REVIEW OF INFORMATION SYSTEMS INTEGRATION REQUIREMENTS
<span title="">2018</span>
<i title="Taylor's University">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3vxazte2xfh4vfhg6itjiodlsq" style="color: black;">Journal of Engineering Science and Technology</a>
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A systematic literature review was conducted to select the relevant studies. A total of 11 articles were finally included for assessment. ...
The findings of this review revealed that data integration is considered the most important precondition for the basis of further integration and is the backbone or starting point of a successful integration ...
Acknowledgements This study was funded by Centre for Advanced Computing Technology (C-ACT), Fakulti Teknologi Maklumat dan Komunikasi (FTMK), Universiti Teknikal Malaysia Melaka. ...
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Methods for enhancing the reproducibility of biomedical research findings using electronic health records
<span title="2017-09-11">2017</span>
<i title="Springer Nature">
<a target="_blank" rel="noopener" href="https://fatcat.wiki/container/ormhpxv5gvemfj2eljfl5fxnzm" style="color: black;">BioData Mining</a>
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Reporting guidelines, such as RECORD and STROBE, have set a solid foundation by recommending a series of items for researchers to include in their research outputs. ...
However, a substantial proportion of health research using electronic health records (EHR), data collected and generated during clinical care, is potentially not reproducible mainly due to the fact that ...
Acknowledgements We would like to thank Václav Papež for his help in preparing the figures included in this manuscript. ...
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<a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28912836">pmid:28912836</a>
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