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Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. Myers, David A. Rasko, Owen White
2014 Computer applications in the biosciences : CABIOS  
Circleator is a Perl application that generates circular figures of genome-associated data.  ...  It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It is designed to be both flexible and easy to use.  ...  ACKNOWLEDGEMENTS The authors thank Herv e Tettelin and Heather Huot Creasy for testing and providing feedback, Herv e Tettelin for the Yersinia pestis SNP data and W.  ... 
doi:10.1093/bioinformatics/btu505 pmid:25075113 pmcid:PMC4201160 fatcat:5ccbnfmwjbf5nbbigmcarymwzu

Unexpected diversity in the mobilome of a Pseudomonas aeruginosa strain isolated from a dental unit waterline revealed by SMRT Sequencing

Antony T. Vincent, Steve J. Charette, Jean Barbeau, B. Golding
2018 Genome  
The genome sequence and its annotation were visualized using 110 Circleator version 1.0.0 (Crabtree et al. 2014).  ...  Genes associated with genomic islands were grouped into 97 functional categories using eggNOG-mapper (Huerta-Cepas et al. 2017).  ...  Circleator: 309 Flexible circular visualization of genome-associated data with BioPerl and SVG. 310  ... 
doi:10.1139/gen-2017-0239 pmid:29546998 fatcat:5mbjcb7etzcpldqrqey3dbfizm

Functional analysis of the archaea, bacteria, and viruses from a halite endolithic microbial community [article]

Alexander Crits-Christoph, Diego R Gelsinger, Bing Ma, Jacek Wierzchos, Jacques Ravel, Alfonso Davila, M. Cristina Casero, Jocelyne DiRuggiero
2015 bioRxiv   pre-print
A combination of reference-independent methods identified over 30 complete or near complete viral or proviral genomes with diverse genome structure, genome size, gene content, and hosts.  ...  The Nanopetramus genome contained a unique CRISPR/Cas system with a spacer that matched a partial viral genome from the metagenome.  ...  Circleator: 539 flexible circular visualization of genome-associated data with BioPerl and SVG. 540 Bioinformatics 30: 3125-3127. CK, Barnum T, Fricke WF, Davila AF, Jedynak B et al. 542 (2013).  ... 
doi:10.1101/029934 fatcat:ulnyvv7otzft5pn5dgakb6pybq