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Solubility of water in polyimides: Quartz crystal microbalance measurements

Christopher R. Moylan, Margaret Evans Best, Moonhor Ree
1991 Journal of Polymer Science Part B: Polymer Physics  
B, 27, 2131 (1989). . M. Ree, D. Y. Yoon, L. Depero, and W. Parrish, sub- mitted for publication. Received October 4, 1989 Accepted June 15, 1990  ...  Solubility of Water in Polyimides: Quartz Crystal Microbalance Measurements CHRISTOPHER R.  ... 
doi:10.1002/polb.1991.090290111 fatcat:yg27add77vhbtmc37rwfenkw4e

Quantitative PCR analysis of CYP1A induction in Atlantic salmon (Salmo salar)

Christopher B. Rees, Stephen D McCormick, John P Vanden Heuvel, Weiming Li
2003 Aquatic Toxicology  
Each subject then received an intraperitoneal injection (50 mg kg (1 ) of either b-naphthoflavone (BNF) in corn oil (10 mg BNF ml (1 corn oil) or corn oil alone.  ...  untranslated region of CYP1A mRNA of Atlantic salmon (Rees et al., unpublished data) .  ...  We have determined the sequence of CYP1A in Atlantic salmon through RT-PCR and RACE techniques (Rees et al., GenBank accession number AF361643) .  ... 
doi:10.1016/s0166-445x(02)00062-0 pmid:12413795 fatcat:gt6ao2idi5b6hmcux54io5rwoy

Bioinformatics recipes: creating, executing and distributing reproducible data analysis workflows

Natay Aberra, Aswathy Sebastian, Aaron P. Maloy, Christopher B. Rees, Meredith L. Bartron, Istvan Albert
2020 BMC Bioinformatics  
Bioinformaticians collaborating with life scientists need software that allows them to involve their collaborators in the process of data analysis. We have developed a web application that allows researchers to publish and execute data analysis scripts. Within the platform bioinformaticians are able to deploy data analysis workflows (recipes) that their collaborators can execute via point and click interfaces. The results generated by the recipes are viewable via the web interface and consist
more » ... a snapshot of all the commands, printed messages and files that have been generated during the recipe run. A demonstration version of our software is available at https://www.bioinformatics.recipes/ . Detailed documentation for the software is available at: https://bioinformatics-recipes.readthedocs.io . The source code for the software is distributed through GitHub at https://github.com/ialbert/biostar-central . Our software platform supports collaborative interactions between bioinformaticians and life scientists. The software is presented via a web application that provides a high utility and user-friendly approach for conducting reproducible research. The recipes developed and shared through the web application are generic, with broad applicability and may be downloaded and executed on other computing platforms.
doi:10.1186/s12859-020-03602-6 pmid:32640986 fatcat:op5yptlckvfpnjvyhi37g73j7q

Detecting the movement and spawning activity of bigheaded carps with environmental DNA

Richard A. Erickson, Christopher B. Rees, Alison A. Coulter, Christopher M. Merkes, Sunnie G. McCalla, Katherine F. Touzinsky, Liza Walleser, Reuben R. Goforth, Jon J. Amberg
2016 Molecular Ecology Resources  
Current applications of eDNA are widespread, but the relatively new technology requires further refinement. a These authors contributed equally to this work. b These authors also contributed equally to  ...  only inferences about the relative abundance of a species present through time or space may be drawn from eDNA data (e.g, there are likely more fish (or at least fish biomass) at Site A compared to Site B)  ... 
doi:10.1111/1755-0998.12533 pmid:27087387 fatcat:cnsvipmetvaa3dlud7imntbglu

Economic conditions, illicit drug use, and substance use disorders in the United States

Christopher S. Carpenter, Chandler B. McClellan, Daniel I. Rees
2017 Journal of Health Economics  
Descriptive Statistics, Substance Use Outcomes and Demographics We begin by presenting descriptive statistics on drug use in Table 1 b.  ... 
doi:10.1016/j.jhealeco.2016.12.009 pmid:28235697 fatcat:hx5m22flqfalvjc4vqs4oaeina

Development and application of a real-time quantitative PCR assay for determining CYP1A transcripts in three genera of salmonids

Christopher B. Rees, Weiming Li
2004 Aquatic Toxicology  
et al. (2003) AF361643 Salvelinus fontinalis CYP1A (brook trout) Rees and Li, (this paper) AF539414 Salvelinus namaycush CYP1A (lake trout) Rees and Li, (this paper) AF539415 Stenotomus chrysops  ...  RT-PCR Reverse transcription was performed as described previously (Rees et al., 2003) .  ... 
doi:10.1016/j.aquatox.2003.10.004 pmid:15168944 fatcat:odhpe4sonzg65eisjctsxjp3sa

Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens . III. Mutational Origins of Wrinkly Spreader Diversity

Eleni Bantinaki, Rees Kassen, Christopher G. Knight, Zena Robinson, Andrew J. Spiers, Paul B. Rainey
2007 Genetics  
SM DwspR SM SM pVSP61-wspC WS b SM pVSP61-wspF SM SM pVSP61-wspR WS b SM pVSP61-wspE SM LSWS DwspC SM b LSWS DwspF WS LSWS DwspR SM b LSWS pVSP61-wspC WS LSWS pVSP61-wspF SM b LSWS pVSP61-wspR WS LSWS  ...  activity was determined in King's medium B after 4, 12, 24, and 48 hr of growth.  ... 
doi:10.1534/genetics.106.069906 pmid:17339222 pmcid:PMC1893022 fatcat:xlk6bc6h4zf67ksqnl4ixdyrai

Shared mechanisms between coronary heart disease and depression: findings from a large UK general population-based cohort

Golam M. Khandaker, Verena Zuber, Jessica M. B. Rees, Livia Carvalho, Amy M. Mason, Christopher N. Foley, Apostolos Gkatzionis, Peter B. Jones, Stephen Burgess
2019 Molecular Psychiatry  
against associations with risk of probable lifetime major depression, moderate/ severe (log odds ratios) for three exposures: a triglycerides (SD units) based on 51 genome-wide significant predictors; b  ... 
doi:10.1038/s41380-019-0395-3 pmid:30886334 pmcid:PMC7303009 fatcat:pm3wjojegne77luky3pbxaq2zm

Correction: Shared mechanisms between coronary heart disease and depression: findings from a large UK general population-based cohort

Golam M. Khandaker, Verena Zuber, Jessica M. B. Rees, Livia Carvalho, Amy M. Mason, Christopher N. Foley, Apostolos Gkatzionis, Peter B. Jones, Stephen Burgess
2020 Molecular Psychiatry  
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
doi:10.1038/s41380-020-0857-7 pmid:32807844 pmcid:PMC8505250 fatcat:xc4wphbpmnerxpcxu5fdtaxamy

Genetic Analysis Shows that Morphology Alone Cannot Distinguish Asian Carp Eggs from Those of Other Cyprinid Species

James H. Larson, S. Grace McCalla, Duane C. Chapman, Christopher Rees, Brent C. Knights, Jon M. Vallazza, Amy E. George, William B. Richardson, Jon Amberg
2016 Figshare  
Fish eggs and embryos (hereafter collectively referred to as "eggs") were collected in the upper Mississippi River main stem (~300 km upstream of previously reported spawning by invasive Asian carp) during summer 2013. Based on previously published morphological characteristics, the eggs were identified as belonging to Asian carp. A subsample of the eggs was subsequently analyzed by using molecular methods to determine species identity. Genetic identification using the cytochrome-c oxidase 1
more » ... e was attempted for a total of 41 eggs. Due to the preservation technique used (formalin) and the resulting DNA degradation, sequences were recovered from only 17 individual eggs. In all 17 cases, cyprinids other than Asian carp (usually Notropis sp.) were identified as the most likely species. In previously published reports, a key characteristic that distinguished Asian carp eggs from those of other cyprinids was size: Asian carp eggs exhibited diameters ranging from 4.0 to 6.0 mm and were thought to be much larger than the otherwise similar eggs of native species. Eggs from endemic cyprinids were believed to rarely reach 3.0 mm and had not been observed to exceed 3.3 mm. However, many of the eggs that were genetically identified as originating from native cyprinids were as large as 4.0 mm in diameter (at early developmental stages) and were therefore large enough to overlap with the lower end of the size range observed for Asian carp eggs. Researchers studying the egg stages of Asian carp and other cyprinids should plan on preserving subsets of eggs for genetic analysis to confirm morphological identifications. Received July 30, 2015; accepted April 22, 2016 Published online August 31, 2016
doi:10.6084/m9.figshare.3796296.v1 fatcat:2ybtsohuybfyjaw27jzdobwtsq

Improving on a modal-based estimation method: model averaging for consistent and efficient estimation in Mendelian randomization when a plurality of candidate instruments are valid [article]

Stephen Burgess, Verena Zuber, Apostolos Gkatzionis, Jessica M. B. Rees, Christopher Foley
2017 bioRxiv   pre-print
For the risk factor LDL-cholesterol, and assuming normality, the standard error would be 0.062. b The confidence interval in this case is the union of two disjoint ranges. 17 .  ...  These gene regions are: HMGCR (proxy for statin treatment), PCSK9 (proxy for PCSK9 inhibition), NPC1L1 (proxy for ezetimibe), APOB (encodes biologically relevant apolipoprotein B), ABCG5/G8 (bile acid  ... 
doi:10.1101/175372 fatcat:y2lm53lycbgo7jda47gfbciq4e

Eastward Expansion of Round Goby in New York: Assessment of Detection Methods and Current Range

Scott D. George, Barry P. Baldigo, Christopher B. Rees, Meredith L. Bartron, Dylan Winterhalter
2021 Transactions of the American Fisheries Society  
first three surveys (spring 2016, summer 2016, and spring 2017), Round Goby DNA was only detected at those sites with the exception of a single positive replicate at C97.8 during summer 2016 with the Rees-COI  ...  framework in which repeated positives are required to truly constitute a detection (Erickson et al. 2019; Mize et al. 2019) and complemented with some level of effort using traditional sampling gears (Rees  ... 
doi:10.1002/tafs.10290 fatcat:7cyauf5dtjfbtkmlaznyjpj4za

Shared mechanisms between coronary heart disease and depression: findings from a large UK general population-based cohort: Supplementary Material [article]

Golam M Khandaker, Verena Zuber, Jessica MB Rees, Livia Carvalho, Amy M Mason, Christopher N Foley, Apostolos Gkatzionis, Peter B Jones, Stephen Burgess
2019 bioRxiv   pre-print
g e n o m e - w i d e l e v e l o f s i g n i f i c a n c e i n a l a r g e m e t a - a n a l y s i s o f t h e U K B i o b a n k C a r d i o M e t a b o l i c C o n s o r t i u m B P w o r k i n g g  ...  i o l o g i c a l p a t h w a y s c o n t r i b u t i n g t o c o m o r b i d i t y .  ... 
doi:10.1101/533828 fatcat:okhuarbv2jgijorxktf6tphjgm

A non-lethal method to estimate CYP1A expression in laboratory and wild Atlantic salmon (Salmo salar)

Christopher B. Rees, Stephen D. McCormick, Weiming Li
2005 Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology  
Synthesis of cDNA followed that of Rees et al. (2003) .  ...  The vertical bars indicate the standard error of the mean (SEM). b. Log mean number of CYP1A transcripts per microgram of total RNA in liver tissue of Atlantic salmon 7 days post-injection.  ... 
doi:10.1016/j.cca.2005.04.010 pmid:16051526 fatcat:ubjkya2qhzcnlmrknnzkv77csu

Sentinel lymph node biopsy is accurate and prognostic in head and neck melanoma

Audrey B. Erman, Ryan M. Collar, Kent A. Griffith, Lori Lowe, Michael S. Sabel, Christopher K. Bichakjian, Sandra L. Wong, Scott A. McLean, Riley S. Rees, Timothy M. Johnson, Carol R. Bradford
2011 Cancer  
b Unknown category was omitted from statistical test.  ...  Absent 62 (19.4) 257 (80.6) Unknown 3 (20.0) 12 (80.0) Ulceration Present 19 (30.7) 43 (69.3) .0132 b Absent 46 (16.9) 227 (83.1) Unknown 4 (22.2) 14 (77.8) Abbreviations:  ... 
doi:10.1002/cncr.26288 pmid:21773971 fatcat:oa3hpfofnfhvjogqoqgkfckcs4
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